RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 DEF8Q6ZN54 512 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 HIST3H2AQ7L7L0 130 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 FAM126BQ8IXS8 530 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 ZNF540Q8NDQ6 660 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 HIST1H2ACQ93077 130 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 TMEM176AQ96HP8 235 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 CEP295NLQ96MC4 621 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 ZFP14Q9HCL3 533 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 ATP13A1Q9HD20 1204 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP7.97□□□□□ -1.13
CIITA-201ENST00000324288 FAM50BQ9Y247 325 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 AP2A2O94973 939 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 HMGCRP04035 888 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 DPEP1P16444 411 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 CYP11B2P19099 503 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 GRB10Q13322 594 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 NETO2Q8NC67 525 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 PIH1D2Q8WWB5 315 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 TAMM41Q96BW9 452 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 CNPY3Q9BT09 278 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 CNPPD1Q9BV87 410 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 WDR12Q9GZL7 423 aaKnown RBP7.97□□□□□ -1.13
CIITA-201ENST00000324288 GDF3Q9NR23 364 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 TBC1D13Q9NVG8 400 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 SOHLH2Q9NX45 425 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 ITGB1BP2Q9UKP3 347 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 MAPRE3Q9UPY8 281 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 A0A0G2JPF8 293 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 LRRC14BA6NHZ5 514 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 HNRNPCL3B7ZW38 293 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 STX11O75558 287 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 OR5F1O95221 314 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 HNRNPCL4P0DMR1 293 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 VDRP11473 427 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 MYBPC1Q00872 1141 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 FAM171BQ6P995 826 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 KBTBD7Q8WVZ9 684 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 MECRQ9BV79 373 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 DDX43Q9NXZ2 648 aaKnown RBP7.97□□□□□ -1.13
CIITA-201ENST00000324288 A0A0A6YYK5 440 aaPredicted RBP7.97□□□□□ -1.13
CIITA-201ENST00000324288 RGSL1A5PLK6 1076 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 MAN2A2P49641 1150 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 MAZP56270 477 aaKnown RBP7.97□□□□□ -1.13
CIITA-201ENST00000324288 MTAPQ13126 283 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 SLC39A12Q504Y0 691 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 FAM171A1Q5VUB5 890 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 TRIM40Q6P9F5 258 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 FDXACB1Q9BRP7 624 aaPredicted RBP7.97□□□□□ -1.13
CIITA-201ENST00000324288 ZSCAN5AQ9BUG6 496 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 BPIFA1Q9NP55 256 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 COMMD3-BMI1R4GMX3 469 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 PROSCO94903 275 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 SNRPB2P08579 225 aaKnown RBP7.97□□□□□ -1.13
CIITA-201ENST00000324288 RPA1P27694 616 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 CHKAP35790 457 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 CRY1Q16526 586 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 SPATA20Q8TB22 786 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 ASB12Q8WXK4 309 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 MYLPFQ96A32 169 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 ALDH8A1Q9H2A2 487 aaPredicted RBP7.97□□□□□ -1.13
CIITA-201ENST00000324288 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.97□□□□□ -1.13
CIITA-201ENST00000324288 DHRS12A0PJE2 317 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 OGTO15294 1046 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 MAGEA2P43356 314 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 GRIA4P48058 902 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 SETMARQ53H47 684 aaPredicted RBP7.97□□□□□ -1.13
CIITA-201ENST00000324288 GK5Q6ZS86 529 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 FAM220AQ7Z4H9 259 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 ZNF615Q8N8J6 731 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 ARL15Q9NXU5 204 aa7.97□□□□□ -1.13
CIITA-201ENST00000324288 CCNDBP1O95273 360 aa7.96□□□□□ -1.13
CIITA-201ENST00000324288 ICAM1P05362 532 aa7.96□□□□□ -1.13
CIITA-201ENST00000324288 CHRM5P08912 532 aaPredicted RBP7.96□□□□□ -1.13
CIITA-201ENST00000324288 FDX1P10109 184 aa7.96□□□□□ -1.13
CIITA-201ENST00000324288 MPSTP25325 297 aa7.96□□□□□ -1.13
CIITA-201ENST00000324288 PSMB4P28070 264 aa7.96□□□□□ -1.13
CIITA-201ENST00000324288 TOB1P50616 345 aaPredicted RBP7.96□□□□□ -1.13
CIITA-201ENST00000324288 FXR2P51116 673 aaKnown RBP eCLIP7.96□□□□□ -1.13
CIITA-201ENST00000324288 FAAH2Q6GMR7 532 aa7.96□□□□□ -1.13
CIITA-201ENST00000324288 PACS1Q6VY07 963 aa7.96□□□□□ -1.13
CIITA-201ENST00000324288 CHST13Q8NET6 341 aa7.96□□□□□ -1.13
CIITA-201ENST00000324288 OR56A4Q8NGH8 313 aa7.96□□□□□ -1.13
CIITA-201ENST00000324288 OR52K1Q8NGK4 314 aa7.96□□□□□ -1.13
CIITA-201ENST00000324288 CLHC1Q8NHS4 586 aa7.96□□□□□ -1.13
CIITA-201ENST00000324288 DNAJB3Q8WWF6 145 aa7.96□□□□□ -1.13
CIITA-201ENST00000324288 TAS2R14Q9NYV8 317 aa7.96□□□□□ -1.13
CIITA-201ENST00000324288 HECW2Q9P2P5 1572 aa7.96□□□□□ -1.13
CIITA-201ENST00000324288 FAM240BA0A1B0GVZ2 78 aa7.96□□□□□ -1.13
CIITA-201ENST00000324288 H0Y858 1186 aa7.96□□□□□ -1.13
CIITA-201ENST00000324288 BCKDKO14874 412 aa7.96□□□□□ -1.13
CIITA-201ENST00000324288 CD3EAPO15446 510 aaKnown RBP7.96□□□□□ -1.13
CIITA-201ENST00000324288 AKAP3O75969 853 aa7.96□□□□□ -1.13
CIITA-201ENST00000324288 HIRAP54198 1017 aaPredicted RBP7.96□□□□□ -1.13
CIITA-201ENST00000324288 OVOS1Q6IE37 1185 aa7.96□□□□□ -1.13
CIITA-201ENST00000324288 RPTNQ6XPR3 784 aa7.96□□□□□ -1.13
CIITA-201ENST00000324288 MROH8Q9H579 483 aa7.96□□□□□ -1.13
CIITA-201ENST00000324288 NOL11Q9H8H0 719 aaKnown RBP7.96□□□□□ -1.13
CIITA-201ENST00000324288 AHSPQ9NZD4 102 aa7.96□□□□□ -1.13
CIITA-201ENST00000324288 RBMXL2O75526 392 aaKnown RBP7.96□□□□□ -1.13
CIITA-201ENST00000324288 ALOX5P09917 674 aa7.96□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms