RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 ZBTB7AO95365 584 aa12.96□□□□□ -0.33
COL3A1-201ENST00000304636 LYPLA2O95372 231 aa12.96□□□□□ -0.33
COL3A1-201ENST00000304636 RPLP2P05387 115 aaKnown RBP12.96□□□□□ -0.33
COL3A1-201ENST00000304636 CAPN1P07384 714 aa12.96□□□□□ -0.33
COL3A1-201ENST00000304636 USP17L7P0C7H9 530 aa12.96□□□□□ -0.33
COL3A1-201ENST00000304636 HNRNPLP14866 589 aaKnown RBP eCLIP12.96□□□□□ -0.33
COL3A1-201ENST00000304636 GOT1P17174 413 aa12.96□□□□□ -0.33
COL3A1-201ENST00000304636 HPCAL1P37235 193 aa12.96□□□□□ -0.33
COL3A1-201ENST00000304636 FGD3Q5JSP0 725 aa12.96□□□□□ -0.33
COL3A1-201ENST00000304636 CMC1Q7Z7K0 106 aa12.96□□□□□ -0.33
COL3A1-201ENST00000304636 SYT12Q8IV01 421 aa12.96□□□□□ -0.33
COL3A1-201ENST00000304636 LGMNQ99538 433 aa12.96□□□□□ -0.33
COL3A1-201ENST00000304636 SMAD5Q99717 465 aaKnown RBP12.96□□□□□ -0.33
COL3A1-201ENST00000304636 ELOVL4Q9GZR5 314 aa12.96□□□□□ -0.33
COL3A1-201ENST00000304636 ZDHHC18Q9NUE0 388 aa12.96□□□□□ -0.33
COL3A1-201ENST00000304636 ARHGAP28Q9P2N2 729 aa12.96□□□□□ -0.33
COL3A1-201ENST00000304636 FAM50BQ9Y247 325 aa12.96□□□□□ -0.33
COL3A1-201ENST00000304636 PCDHB7Q9Y5E2 793 aa12.96□□□□□ -0.33
COL3A1-201ENST00000304636 SLIT3O75094 1523 aa12.96□□□□□ -0.33
COL3A1-201ENST00000304636 CNPP09543 421 aaKnown RBP12.96□□□□□ -0.34
COL3A1-201ENST00000304636 EPB42P16452 691 aa12.96□□□□□ -0.34
COL3A1-201ENST00000304636 USP46P62068 366 aa12.96□□□□□ -0.34
COL3A1-201ENST00000304636 FASTKD3Q14CZ7 662 aaKnown RBP12.96□□□□□ -0.34
COL3A1-201ENST00000304636 TAF1CQ15572 869 aaPredicted RBP12.96□□□□□ -0.34
COL3A1-201ENST00000304636 PSMD5Q16401 504 aa12.96□□□□□ -0.34
COL3A1-201ENST00000304636 PAN2Q504Q3 1202 aaKnown RBP12.96□□□□□ -0.34
COL3A1-201ENST00000304636 OVOS1Q6IE37 1185 aa12.96□□□□□ -0.34
COL3A1-201ENST00000304636 PDPRQ8NCN5 879 aa12.96□□□□□ -0.34
COL3A1-201ENST00000304636 EPB41L4BQ9H329 900 aa12.96□□□□□ -0.34
COL3A1-201ENST00000304636 WDR55Q9H6Y2 383 aaPredicted RBP12.96□□□□□ -0.34
COL3A1-201ENST00000304636 CIDEBQ9UHD4 219 aa12.96□□□□□ -0.34
COL3A1-201ENST00000304636 MAGEL2Q9UJ55 1249 aa12.96□□□□□ -0.34
COL3A1-201ENST00000304636 TIMM13Q9Y5L4 95 aaPredicted RBP12.96□□□□□ -0.34
COL3A1-201ENST00000304636 SNX8Q9Y5X2 465 aa12.96□□□□□ -0.34
COL3A1-201ENST00000304636 EME2A4GXA9 379 aaPredicted RBP12.96□□□□□ -0.34
COL3A1-201ENST00000304636 CCDC182A6NF36 153 aa12.96□□□□□ -0.34
COL3A1-201ENST00000304636 TIPRLO75663 272 aa12.96□□□□□ -0.34
COL3A1-201ENST00000304636 ENDOD1O94919 500 aa12.96□□□□□ -0.34
COL3A1-201ENST00000304636 MYCP01106 439 aaPredicted RBP12.96□□□□□ -0.34
COL3A1-201ENST00000304636 CCNB1P14635 433 aa12.96□□□□□ -0.34
COL3A1-201ENST00000304636 IDH2P48735 452 aaKnown RBP12.96□□□□□ -0.34
COL3A1-201ENST00000304636 DEPDC4Q8N2C3 294 aa12.96□□□□□ -0.34
COL3A1-201ENST00000304636 CNTD1Q8N815 330 aa12.96□□□□□ -0.34
COL3A1-201ENST00000304636 MCOLN3Q8TDD5 553 aa12.96□□□□□ -0.34
COL3A1-201ENST00000304636 REPS1Q96D71 796 aa12.96□□□□□ -0.34
COL3A1-201ENST00000304636 SENP6Q9GZR1 1112 aaPredicted RBP12.96□□□□□ -0.34
COL3A1-201ENST00000304636 SPATC1LQ9H0A9 340 aa12.96□□□□□ -0.34
COL3A1-201ENST00000304636 PCDH18Q9HCL0 1135 aa12.96□□□□□ -0.34
COL3A1-201ENST00000304636 TRPM5Q9NZQ8 1165 aa12.96□□□□□ -0.34
COL3A1-201ENST00000304636 NFASCO94856 1347 aa12.96□□□□□ -0.34
COL3A1-201ENST00000304636 NKRFO15226 690 aaKnown RBP eCLIP12.95□□□□□ -0.34
COL3A1-201ENST00000304636 NFICP08651 508 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 DBTP11182 482 aaKnown RBP12.95□□□□□ -0.34
COL3A1-201ENST00000304636 MBL2P11226 248 aaPredicted RBP12.95□□□□□ -0.34
COL3A1-201ENST00000304636 THPOP40225 353 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 CDKN2BP42772 138 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 ZFPM1Q8IX07 1006 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 OR2T34Q8NGX1 318 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 OR2T3Q8NH03 318 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 HELQQ8TDG4 1101 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 PANX3Q96QZ0 392 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 ACO2Q99798 780 aaKnown RBP12.95□□□□□ -0.34
COL3A1-201ENST00000304636 DNAJB4Q9UDY4 337 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 SLC25A13Q9UJS0 675 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 FAM155BO75949 473 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 ZNF286BP0CG31 522 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 COL6A2P12110 1019 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 DGKAP23743 735 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 NUP62P37198 522 aaPredicted RBP12.95□□□□□ -0.34
COL3A1-201ENST00000304636 DENND5AQ6IQ26 1287 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 CDC73Q6P1J9 531 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 MZT2AQ6P582 158 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 TXNDC11Q6PKC3 985 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 ZDHHC24Q6UX98 284 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 TMEM86AQ8N2M4 240 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 JOSD2Q8TAC2 188 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 TRAPPC12Q8WVT3 735 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 BHMTQ93088 406 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 RHOJQ9H4E5 214 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 VPS45Q9NRW7 570 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 IKZF3Q9UKT9 509 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 SNCAIPQ9Y6H5 919 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 CASTOR2A6NHX0 329 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 TNFRSF21O75509 655 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 NADKO95544 446 aaPredicted RBP12.95□□□□□ -0.34
COL3A1-201ENST00000304636 COX7A2P14406 83 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 MPSTP25325 297 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 PSMA3P25788 255 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 PEX2P28328 305 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 GPR15P49685 360 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 RPS6KA3P51812 740 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 USP39Q53GS9 565 aaKnown RBP12.95□□□□□ -0.34
COL3A1-201ENST00000304636 INTS11Q5TA45 600 aaKnown RBP12.95□□□□□ -0.34
COL3A1-201ENST00000304636 RFWD3Q6PCD5 774 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 AKAP14Q86UN6 197 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 LRRC49Q8IUZ0 686 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 ANKRD52Q8NB46 1076 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 CIB1Q99828 191 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 ATP13A1Q9HD20 1204 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 PNPLA8Q9NP80 782 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms