RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 NCOA4Q13772 614 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 DENND5AQ6IQ26 1287 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 KLHL17Q6TDP4 642 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 ILDR2Q71H61 639 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 R3HCC1LQ7Z5L2 792 aaKnown RBP5.29□□□□□ -1.56
SCN1A-201ENST00000303395 ADAMTSL2Q86TH1 951 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 RAB43Q86YS6 212 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 BRSK2Q8IWQ3 736 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 SCN4BQ8IWT1 228 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 TMEM132CQ8N3T6 1108 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 LRRC20Q8TCA0 184 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 RIN2Q8WYP3 895 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-201ENST00000303395 DPF3Q92784 378 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 CD101Q93033 1021 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 FATE1Q969F0 183 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 SLC39A3Q9BRY0 314 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 POPDC3Q9HBV1 291 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 CAPN10Q9HC96 672 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 NECTIN3Q9NQS3 549 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 RAB6BQ9NRW1 208 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 INTS10Q9NVR2 710 aaKnown RBP5.29□□□□□ -1.56
SCN1A-201ENST00000303395 XPR1Q9UBH6 696 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 SPASTQ9UBP0 616 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 HAO1Q9UJM8 370 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 MAFFQ9ULX9 164 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 FAM50BQ9Y247 325 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 SNX13Q9Y5W8 968 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 COL2A1P02458 1487 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-201ENST00000303395 C1orf167Q5SNV9 1468 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 TJP1Q07157 1748 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 F8W810 466 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 FOSL1P15407 271 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 CHI3L1P36222 383 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-201ENST00000303395 EIF2DP41214 584 aaKnown RBP5.29□□□□□ -1.56
SCN1A-201ENST00000303395 GRM3Q14832 879 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 RSBN1Q5VWQ0 802 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-201ENST00000303395 WDR59Q6PJI9 974 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 DEFB107AQ8IZN7 70 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 TMEM86AQ8N2M4 240 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 FBXO36Q8NEA4 188 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 TBATAQ96M53 351 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 HEXIM2Q96MH2 286 aaKnown RBP5.29□□□□□ -1.56
SCN1A-201ENST00000303395 ZNF347Q96SE7 839 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 C17orf80Q9BSJ5 609 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 SNTG2Q9NY99 539 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.29□□□□□ -1.56
SCN1A-201ENST00000303395 DAPK2Q9UIK4 370 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 PCDHGC3Q9UN70 934 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 ST3GAL5Q9UNP4 418 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 SEC16AO15027 2179 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 TEX51A0A1B0GUA7 166 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 EFCAB10A6NFE3 127 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 ARL5CA6NH57 179 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 A6NHS1 94 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 AXIN1O15169 862 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 SULT1B1O43704 296 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 ORC5O43913 435 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 RAG1P15918 1043 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 SSTP61278 116 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 PLIN5Q00G26 463 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 HSF2Q03933 536 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 CBX3Q13185 183 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 SLC39A6Q13433 755 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 EFR3AQ14156 821 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 ZSWIM7Q19AV6 140 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 PDZK1Q5T2W1 519 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 CHRDL2Q6WN34 429 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 CACTIN-AS1Q8N1I8 211 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 SLC4A11Q8NBS3 891 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 BHLHE22Q8NFJ8 381 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-201ENST00000303395 OR6P1Q8NGX9 317 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 GATAD2BQ8WXI9 593 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 AKT1S1Q96B36 256 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 SERPINB11Q96P15 392 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 RHOJQ9H4E5 214 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 TRPV5Q9NQA5 729 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 TRPS1Q9UHF7 1281 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 ZMYM5Q9UJ78 669 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 GIT1Q9Y2X7 761 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 PKP3Q9Y446 797 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 ARHGEF17Q96PE2 2063 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-201ENST00000303395 LOC102724428A0A0B4J2F2 783 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 SNRPB2P08579 225 aaKnown RBP5.28□□□□□ -1.56
SCN1A-201ENST00000303395 GSTM1P09488 218 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 COX4I1P13073 169 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 CTPS1P17812 591 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 SDC2P34741 201 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 SIK1P57059 783 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 TPI1P60174 286 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 PWP1Q13610 501 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 QPRTQ15274 297 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 QRICH1Q2TAL8 776 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 DDX59Q5T1V6 619 aaKnown RBP eCLIP5.28□□□□□ -1.56
SCN1A-201ENST00000303395 USP17L2Q6R6M4 530 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 UBE2R2Q712K3 238 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-201ENST00000303395 ZNF571Q7Z3V5 609 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-201ENST00000303395 TRIM74Q86UV6 250 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 TRIM73Q86UV7 250 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 POC5Q8NA72 575 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 GLMNQ92990 594 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms