RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 FBXO5Q9UKT4 447 aa18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 TLR6Q9Y2C9 796 aa18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 MATN2O00339 956 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 CABYRO75952 493 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 PEX11BO96011 259 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 CKBP12277 381 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 TFEBP19484 476 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 DSC2Q02487 901 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 IHHQ14623 411 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 EML3Q32P44 896 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 MS4A13Q5J8X5 152 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 TCHHL1Q5QJ38 904 aaPredicted RBP18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 SEL1L3Q68CR1 1132 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 LINC01599Q8WXQ3 324 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 MARK4Q96L34 752 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 GPR78Q96P69 363 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 SCML2Q9UQR0 700 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 RAP2CQ9Y3L5 183 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 NEMP2A6NFY4 417 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 TMEM88BA6NKF7 163 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 TMEM233B4DJY2 109 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 TARM1B6A8C7 271 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 GJB3O75712 270 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 RPLP2P05387 115 aaKnown RBP18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 ETFBP38117 255 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 SREBF2Q12772 1141 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 LSM12Q3MHD2 195 aaKnown RBP18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 FSCBQ5H9T9 825 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 PPM1LQ5SGD2 360 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 TSTD2Q5T7W7 516 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 TMEM198Q66K66 360 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 NEPROQ6NW34 567 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 LDB1Q86U70 411 aaPredicted RBP18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 HPS6Q86YV9 775 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 COLGALT2Q8IYK4 626 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 LSMEM2Q8N112 164 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 PPFIBP2Q8ND30 876 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 HEXDCQ8WVB3 486 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 PSMG2Q969U7 264 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 SLC39A13Q96H72 371 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 RGS18Q9NS28 235 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 TBC1D13Q9NVG8 400 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 CDH22Q9UJ99 828 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 MID2Q9UJV3 735 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 SLC27A5Q9Y2P5 690 aa18.55■□□□□ 0.56
SHKBP1-201ENST00000291842 ARHGEF37A1IGU5 675 aa18.54■□□□□ 0.56
SHKBP1-201ENST00000291842 MAP3K7O43318 606 aa18.54■□□□□ 0.56
SHKBP1-201ENST00000291842 GRID2O43424 1007 aa18.54■□□□□ 0.56
SHKBP1-201ENST00000291842 H2AFYO75367 372 aaKnown RBP18.54■□□□□ 0.56
SHKBP1-201ENST00000291842 TADA2AO75478 443 aa18.54■□□□□ 0.56
SHKBP1-201ENST00000291842 HTR7P34969 479 aa18.54■□□□□ 0.56
SHKBP1-201ENST00000291842 CD151P48509 253 aa18.54■□□□□ 0.56
SHKBP1-201ENST00000291842 PDCD2Q16342 344 aaPredicted RBP18.54■□□□□ 0.56
SHKBP1-201ENST00000291842 KDELC1Q6UW63 502 aa18.54■□□□□ 0.56
SHKBP1-201ENST00000291842 DCP1BQ8IZD4 617 aaKnown RBP18.54■□□□□ 0.56
SHKBP1-201ENST00000291842 C2CD4AQ8NCU7 369 aaPredicted RBP18.54■□□□□ 0.56
SHKBP1-201ENST00000291842 RDH11Q8TC12 318 aa18.54■□□□□ 0.56
SHKBP1-201ENST00000291842 UCMAQ8WVF2 138 aa18.54■□□□□ 0.56
SHKBP1-201ENST00000291842 IGSF8Q969P0 613 aa18.54■□□□□ 0.56
SHKBP1-201ENST00000291842 UBE2OQ9C0C9 1292 aaKnown RBP18.54■□□□□ 0.56
SHKBP1-201ENST00000291842 ANGPTL2Q9UKU9 493 aa18.54■□□□□ 0.56
SHKBP1-201ENST00000291842 SSX2IPQ9Y2D8 614 aa18.54■□□□□ 0.56
SHKBP1-201ENST00000291842 HDAC3O15379 428 aa18.54■□□□□ 0.56
SHKBP1-201ENST00000291842 OAZ2O95190 189 aa18.54■□□□□ 0.56
SHKBP1-201ENST00000291842 PAMP19021 973 aa18.54■□□□□ 0.56
SHKBP1-201ENST00000291842 GLDCP23378 1020 aa18.54■□□□□ 0.56
SHKBP1-201ENST00000291842 SLC12A2P55011 1212 aa18.54■□□□□ 0.56
SHKBP1-201ENST00000291842 AP2B1P63010 937 aa18.54■□□□□ 0.56
SHKBP1-201ENST00000291842 DSC1Q08554 894 aa18.54■□□□□ 0.56
SHKBP1-201ENST00000291842 CSHL1Q14406 222 aa18.54■□□□□ 0.56
SHKBP1-201ENST00000291842 VARS2Q5ST30 1063 aaKnown RBP18.54■□□□□ 0.56
SHKBP1-201ENST00000291842 RAP1GAP2Q684P5 730 aa18.54■□□□□ 0.56
SHKBP1-201ENST00000291842 NXNQ6DKJ4 435 aa18.54■□□□□ 0.56
SHKBP1-201ENST00000291842 PAXIP1Q6ZW49 1069 aaPredicted RBP18.54■□□□□ 0.56
SHKBP1-201ENST00000291842 LMNTD2Q8IXW0 634 aa18.54■□□□□ 0.56
SHKBP1-201ENST00000291842 SLC25A51Q9H1U9 297 aa18.54■□□□□ 0.56
SHKBP1-201ENST00000291842 AIM2O14862 343 aa18.53■□□□□ 0.56
SHKBP1-201ENST00000291842 SMNDC1O75940 238 aaKnown RBP eCLIP18.53■□□□□ 0.56
SHKBP1-201ENST00000291842 PSEN1P49768 467 aa18.53■□□□□ 0.56
SHKBP1-201ENST00000291842 NKX3-2P78367 333 aa18.53■□□□□ 0.56
SHKBP1-201ENST00000291842 TBL3Q12788 808 aaKnown RBP18.53■□□□□ 0.56
SHKBP1-201ENST00000291842 MARC1Q5VT66 337 aa18.53■□□□□ 0.56
SHKBP1-201ENST00000291842 SLC24A5Q71RS6 500 aa18.53■□□□□ 0.56
SHKBP1-201ENST00000291842 RPS27LQ71UM5 84 aaKnown RBP18.53■□□□□ 0.56
SHKBP1-201ENST00000291842 PTAR1Q7Z6K3 402 aaPredicted RBP18.53■□□□□ 0.56
SHKBP1-201ENST00000291842 ACTRT2Q8TDY3 377 aa18.53■□□□□ 0.56
SHKBP1-201ENST00000291842 SLC26A7Q8TE54 656 aa18.53■□□□□ 0.56
SHKBP1-201ENST00000291842 C1orf74Q96LT6 269 aa18.53■□□□□ 0.56
SHKBP1-201ENST00000291842 OLFM1Q99784 485 aa18.53■□□□□ 0.56
SHKBP1-201ENST00000291842 ZYG11BQ9C0D3 744 aa18.53■□□□□ 0.56
SHKBP1-201ENST00000291842 RNF186Q9NXI6 227 aa18.53■□□□□ 0.56
SHKBP1-201ENST00000291842 FIS1Q9Y3D6 152 aa18.53■□□□□ 0.56
SHKBP1-201ENST00000291842 CPB1P15086 417 aa18.53■□□□□ 0.56
SHKBP1-201ENST00000291842 ACLYP53396 1101 aa18.53■□□□□ 0.56
SHKBP1-201ENST00000291842 CTXN3Q4LDR2 81 aa18.53■□□□□ 0.56
SHKBP1-201ENST00000291842 FAM26DQ5JW98 314 aa18.53■□□□□ 0.56
SHKBP1-201ENST00000291842 FAM219BQ5XKK7 198 aa18.53■□□□□ 0.56
SHKBP1-201ENST00000291842 KIAA0930Q6ICG6 404 aaPredicted RBP18.53■□□□□ 0.56
SHKBP1-201ENST00000291842 ZNF683Q8IZ20 524 aa18.53■□□□□ 0.56
SHKBP1-201ENST00000291842 PCSK9Q8NBP7 692 aaKnown RBP18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms