RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 OSBPL2Q9H1P3 480 aa12.96□□□□□ -0.33
CD44-203ENST00000278386 GPR27Q9NS67 375 aa12.96□□□□□ -0.33
CD44-203ENST00000278386 DAAM1Q9Y4D1 1078 aa12.96□□□□□ -0.33
CD44-203ENST00000278386 FASNP49327 2511 aaKnown RBP12.95□□□□□ -0.34
CD44-203ENST00000278386 SPTY2D1-AS1A0A0U1RR47 76 aa12.95□□□□□ -0.34
CD44-203ENST00000278386 CXorf51AA0A1B0GTR3 108 aa12.95□□□□□ -0.34
CD44-203ENST00000278386 ANKRD62A6NC57 917 aa12.95□□□□□ -0.34
CD44-203ENST00000278386 ZSCAN5CA6NGD5 496 aaPredicted RBP12.95□□□□□ -0.34
CD44-203ENST00000278386 AQP9O43315 295 aa12.95□□□□□ -0.34
CD44-203ENST00000278386 OPA1O60313 960 aa12.95□□□□□ -0.34
CD44-203ENST00000278386 CD160O95971 181 aa12.95□□□□□ -0.34
CD44-203ENST00000278386 CSF2P04141 144 aa12.95□□□□□ -0.34
CD44-203ENST00000278386 GIMD1P0DJR0 217 aa12.95□□□□□ -0.34
CD44-203ENST00000278386 JUNDP17535 347 aa12.95□□□□□ -0.34
CD44-203ENST00000278386 EPHB2P29323 1055 aa12.95□□□□□ -0.34
CD44-203ENST00000278386 THOP1P52888 689 aa12.95□□□□□ -0.34
CD44-203ENST00000278386 GSCP56915 257 aaPredicted RBP12.95□□□□□ -0.34
CD44-203ENST00000278386 RHOAP61586 193 aa12.95□□□□□ -0.34
CD44-203ENST00000278386 RAD51Q06609 339 aa12.95□□□□□ -0.34
CD44-203ENST00000278386 CLEC16AQ2KHT3 1053 aa12.95□□□□□ -0.34
CD44-203ENST00000278386 DEFB133Q30KQ1 61 aa12.95□□□□□ -0.34
CD44-203ENST00000278386 TBC1D25Q3MII6 688 aa12.95□□□□□ -0.34
CD44-203ENST00000278386 ZCCHC8Q6NZY4 707 aaKnown RBP12.95□□□□□ -0.34
CD44-203ENST00000278386 DNAJC24Q6P3W2 148 aa12.95□□□□□ -0.34
CD44-203ENST00000278386 SCYL2Q6P3W7 929 aa12.95□□□□□ -0.34
CD44-203ENST00000278386 SLFN11Q7Z7L1 901 aa12.95□□□□□ -0.34
CD44-203ENST00000278386 VPS36Q86VN1 386 aa12.95□□□□□ -0.34
CD44-203ENST00000278386 PLPP6Q8IY26 295 aa12.95□□□□□ -0.34
CD44-203ENST00000278386 CACTIN-AS1Q8N1I8 211 aa12.95□□□□□ -0.34
CD44-203ENST00000278386 C3orf20Q8ND61 904 aa12.95□□□□□ -0.34
CD44-203ENST00000278386 LMX1AQ8TE12 382 aa12.95□□□□□ -0.34
CD44-203ENST00000278386 CXorf40AQ8TE69 158 aa12.95□□□□□ -0.34
CD44-203ENST00000278386 FGF11Q92914 225 aa12.95□□□□□ -0.34
CD44-203ENST00000278386 FCRL3Q96P31 734 aaPredicted RBP12.95□□□□□ -0.34
CD44-203ENST00000278386 UBL7Q96S82 380 aaPredicted RBP12.95□□□□□ -0.34
CD44-203ENST00000278386 LGMNQ99538 433 aa12.95□□□□□ -0.34
CD44-203ENST00000278386 NCAPGQ9BPX3 1015 aa12.95□□□□□ -0.34
CD44-203ENST00000278386 RETREG1Q9H6L5 497 aa12.95□□□□□ -0.34
CD44-203ENST00000278386 USP29Q9HBJ7 922 aa12.95□□□□□ -0.34
CD44-203ENST00000278386 APOBEC3BQ9UH17 382 aaKnown RBP12.95□□□□□ -0.34
CD44-203ENST00000278386 RP1P56715 2156 aa12.95□□□□□ -0.34
CD44-203ENST00000278386 PTPRQQ9UMZ3 2332 aa12.95□□□□□ -0.34
CD44-203ENST00000278386 ASXL3Q9C0F0 2248 aa12.94□□□□□ -0.34
CD44-203ENST00000278386 LY6G6EA0A0G2JKS1 128 aa12.94□□□□□ -0.34
CD44-203ENST00000278386 CCP110O43303 1012 aa12.94□□□□□ -0.34
CD44-203ENST00000278386 KDELR3O43731 214 aa12.94□□□□□ -0.34
CD44-203ENST00000278386 CREB3O43889 395 aa12.94□□□□□ -0.34
CD44-203ENST00000278386 USP12O75317 370 aa12.94□□□□□ -0.34
CD44-203ENST00000278386 CSO75390 466 aaKnown RBP12.94□□□□□ -0.34
CD44-203ENST00000278386 POP4O95707 220 aaKnown RBP12.94□□□□□ -0.34
CD44-203ENST00000278386 MPOP05164 745 aa12.94□□□□□ -0.34
CD44-203ENST00000278386 GP1BAP07359 652 aa12.94□□□□□ -0.34
CD44-203ENST00000278386 UNGP13051 313 aaPredicted RBP12.94□□□□□ -0.34
CD44-203ENST00000278386 DESP17661 470 aa12.94□□□□□ -0.34
CD44-203ENST00000278386 XPAP23025 273 aaPredicted RBP12.94□□□□□ -0.34
CD44-203ENST00000278386 RFC1P35251 1148 aaPredicted RBP12.94□□□□□ -0.34
CD44-203ENST00000278386 IGFALSP35858 605 aa12.94□□□□□ -0.34
CD44-203ENST00000278386 COPB1P53618 953 aaKnown RBP12.94□□□□□ -0.34
CD44-203ENST00000278386 GABREP78334 506 aa12.94□□□□□ -0.34
CD44-203ENST00000278386 PTP4A2Q12974 167 aa12.94□□□□□ -0.34
CD44-203ENST00000278386 CDKN3Q16667 212 aa12.94□□□□□ -0.34
CD44-203ENST00000278386 MYLK3Q32MK0 819 aa12.94□□□□□ -0.34
CD44-203ENST00000278386 TPRG1LQ5T0D9 272 aa12.94□□□□□ -0.34
CD44-203ENST00000278386 WDR59Q6PJI9 974 aa12.94□□□□□ -0.34
CD44-203ENST00000278386 GDPD4Q6W3E5 623 aa12.94□□□□□ -0.34
CD44-203ENST00000278386 RBFAQ8N0V3 343 aa12.94□□□□□ -0.34
CD44-203ENST00000278386 PYROXD2Q8N2H3 581 aa12.94□□□□□ -0.34
CD44-203ENST00000278386 RTL3Q8N8U3 475 aaKnown RBP12.94□□□□□ -0.34
CD44-203ENST00000278386 NETO2Q8NC67 525 aa12.94□□□□□ -0.34
CD44-203ENST00000278386 CENPIQ92674 756 aaPredicted RBP12.94□□□□□ -0.34
CD44-203ENST00000278386 NAF1Q96HR8 494 aaKnown RBP12.94□□□□□ -0.34
CD44-203ENST00000278386 MCEEQ96PE7 176 aa12.94□□□□□ -0.34
CD44-203ENST00000278386 LENG8Q96PV6 779 aaPredicted RBP12.94□□□□□ -0.34
CD44-203ENST00000278386 PCDHB18PQ96TA0 734 aa12.94□□□□□ -0.34
CD44-203ENST00000278386 KLF6Q99612 283 aaPredicted RBP12.94□□□□□ -0.34
CD44-203ENST00000278386 EPAS1Q99814 870 aa12.94□□□□□ -0.34
CD44-203ENST00000278386 C1QTNF7Q9BXJ2 289 aa12.94□□□□□ -0.34
CD44-203ENST00000278386 C1QTNF2Q9BXJ5 285 aa12.94□□□□□ -0.34
CD44-203ENST00000278386 FANCLQ9NW38 375 aa12.94□□□□□ -0.34
CD44-203ENST00000278386 SIK3Q9Y2K2 1263 aa12.94□□□□□ -0.34
CD44-203ENST00000278386 U3KQA8 63 aa12.94□□□□□ -0.34
CD44-203ENST00000278386 KIF26BQ2KJY2 2108 aa12.94□□□□□ -0.34
CD44-203ENST00000278386 CPED1A4D0V7 1026 aa12.93□□□□□ -0.34
CD44-203ENST00000278386 SPINT1O43278 529 aa12.93□□□□□ -0.34
CD44-203ENST00000278386 TM7SF2O76062 418 aa12.93□□□□□ -0.34
CD44-203ENST00000278386 PCBP4P57723 403 aaKnown RBP12.93□□□□□ -0.34
CD44-203ENST00000278386 UBXN1Q04323 297 aa12.93□□□□□ -0.34
CD44-203ENST00000278386 PTK2BQ14289 1009 aa12.93□□□□□ -0.34
CD44-203ENST00000278386 CDCP2Q5VXM1 449 aa12.93□□□□□ -0.34
CD44-203ENST00000278386 GUSBP11Q6P575 273 aa12.93□□□□□ -0.34
CD44-203ENST00000278386 CRTC1Q6UUV9 634 aa12.93□□□□□ -0.34
CD44-203ENST00000278386 MON1BQ7L1V2 547 aa12.93□□□□□ -0.34
CD44-203ENST00000278386 EFL1Q7Z2Z2 1120 aaKnown RBP12.93□□□□□ -0.34
CD44-203ENST00000278386 TTC7BQ86TV6 843 aa12.93□□□□□ -0.34
CD44-203ENST00000278386 PHACTR4Q8IZ21 702 aa12.93□□□□□ -0.34
CD44-203ENST00000278386 FAM181AQ8N9Y4 354 aa12.93□□□□□ -0.34
CD44-203ENST00000278386 BTN2A2Q8WVV5 523 aa12.93□□□□□ -0.34
CD44-203ENST00000278386 CASKIN2Q8WXE0 1202 aa12.93□□□□□ -0.34
CD44-203ENST00000278386 HMCESQ96FZ2 354 aa12.93□□□□□ -0.34
CD44-203ENST00000278386 EXOC2Q96KP1 924 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms