RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 NTRK2Q16620 822 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 GAGE13Q4V321 117 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 ZRANB3Q5FWF4 1079 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 C12orf60Q5U649 245 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 TAF3Q5VWG9 929 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 RAP1GAP2Q684P5 730 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 OTUD7BQ6GQQ9 843 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 FAM111BQ6SJ93 734 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 USP50Q70EL3 339 aaPredicted RBP4.74□□□□□ -1.65
CD44-202ENST00000278385 SGMS1Q86VZ5 419 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 DNAAF5Q86Y56 855 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 LINC00346Q8IVM7 164 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 DCBLD1Q8N8Z6 715 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 SYT2Q8N9I0 419 aaPredicted RBP4.74□□□□□ -1.65
CD44-202ENST00000278385 ANKRD53Q8N9V6 530 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 OR56B2PQ8NGI1 322 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 CPT1CQ8TCG5 803 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 HASPINQ8TF76 798 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 NOC3LQ8WTT2 800 aaKnown RBP4.74□□□□□ -1.65
CD44-202ENST00000278385 STAMQ92783 540 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 CELF1Q92879 486 aaKnown RBP4.74□□□□□ -1.65
CD44-202ENST00000278385 DVL3Q92997 716 aaPredicted RBP4.74□□□□□ -1.65
CD44-202ENST00000278385 RPL10LQ96L21 214 aaKnown RBP4.74□□□□□ -1.65
CD44-202ENST00000278385 FAM81BQ96LP2 452 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 ZNF396Q96N95 335 aaPredicted RBP4.74□□□□□ -1.65
CD44-202ENST00000278385 GNRHR2Q96P88 292 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 NR1H4Q96RI1 486 aaPredicted RBP4.74□□□□□ -1.65
CD44-202ENST00000278385 DPYSL5Q9BPU6 564 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 FAM118BQ9BPY3 351 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 LZTS2Q9BRK4 669 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 SLC7A5P2Q9GIP4 190 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 PITHD1Q9GZP4 211 aaPredicted RBP4.74□□□□□ -1.65
CD44-202ENST00000278385 PCDHAC1Q9H158 963 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 ISCUQ9H1K1 167 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 VPS16Q9H269 839 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 CLSTN2Q9H4D0 955 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 C17orf75Q9HAS0 396 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 CRLF2Q9HC73 371 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 LTB4R2Q9NPC1 389 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 ARHGEF3Q9NR81 526 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 SLC35D1Q9NTN3 355 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 RBM12Q9NTZ6 932 aaKnown RBP4.74□□□□□ -1.65
CD44-202ENST00000278385 GIMAP4Q9NUV9 329 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 TDP1Q9NUW8 608 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 NMRK1Q9NWW6 199 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 COX16Q9P0S2 106 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 FETUBQ9UGM5 382 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 CNOT7Q9UIV1 285 aaKnown RBP4.74□□□□□ -1.65
CD44-202ENST00000278385 APPL1Q9UKG1 709 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 GRID1Q9ULK0 1009 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 BTBD3Q9Y2F9 522 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 WDR37Q9Y2I8 494 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 MED16Q9Y2X0 877 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 PCDHGA5Q9Y5G8 931 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 PCDHGA1Q9Y5H4 931 aa4.74□□□□□ -1.65
CD44-202ENST00000278385 AFDNP55196 1824 aaKnown RBP4.74□□□□□ -1.65
CD44-202ENST00000278385 NCANO14594 1321 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 CDHR2Q9BYE9 1310 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 ZNF541Q9H0D2 1346 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 FANCIQ9NVI1 1328 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 SNED1Q8TER0 1413 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 MBD3L4A6NDZ8 208 aaPredicted RBP4.73□□□□□ -1.65
CD44-202ENST00000278385 MBD3L3A6NE82 208 aaPredicted RBP4.73□□□□□ -1.65
CD44-202ENST00000278385 SAC3D1A6NKF1 404 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 MYO1GB0I1T2 1018 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 VWA5AO00534 786 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 TNPO2O14787 897 aaKnown RBP4.73□□□□□ -1.65
CD44-202ENST00000278385 MAGEB3O15480 346 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 CA12O43570 354 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 GUCY1B2O75343 617 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 RAD17O75943 681 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 PDE8BO95263 885 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 ABHD16AO95870 558 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 IGKV5-2P06315 115 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 ADRB1P08588 477 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 SPARCP09486 303 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 RARGP13631 454 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 COMTP21964 271 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 IL1R2P27930 398 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 TNFRSF8P28908 595 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 PPARGP37231 505 aaPredicted RBP4.73□□□□□ -1.65
CD44-202ENST00000278385 RABIFP47224 123 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 ARCN1P48444 511 aaKnown RBP4.73□□□□□ -1.65
CD44-202ENST00000278385 SELENOPP49908 381 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 CPT1AP50416 773 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 ALDH18A1P54886 795 aaKnown RBP4.73□□□□□ -1.65
CD44-202ENST00000278385 SOX8P57073 446 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 ANTXR2P58335 489 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 YPEL5P62699 121 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 EXOSC9Q06265 439 aaKnown RBP4.73□□□□□ -1.65
CD44-202ENST00000278385 CXCL9Q07325 125 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 LMAN2Q12907 356 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 TARDBPQ13148 414 aaKnown RBP eCLIP4.73□□□□□ -1.65
CD44-202ENST00000278385 RIN1Q13671 783 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 CAPSQ13938 189 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 CRYMQ14894 314 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 RAB39AQ14964 217 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 NOMO1Q15155 1222 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 NFIL3Q16649 462 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 SLC5A9Q2M3M2 681 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms