RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 MPP4Q96JB8 637 aa20.38■□□□□ 0.85
SYNGAP1-227ENST00000638142 GPR78Q96P69 363 aa20.38■□□□□ 0.85
SYNGAP1-227ENST00000638142 UTP6Q9NYH9 597 aaKnown RBP20.38■□□□□ 0.85
SYNGAP1-227ENST00000638142 AAR2Q9Y312 384 aaKnown RBP20.38■□□□□ 0.85
SYNGAP1-227ENST00000638142 TCAF2A6NFQ2 919 aa20.37■□□□□ 0.85
SYNGAP1-227ENST00000638142 VILLO15195 856 aa20.37■□□□□ 0.85
SYNGAP1-227ENST00000638142 STMN1P16949 149 aa20.37■□□□□ 0.85
SYNGAP1-227ENST00000638142 LRPAP1P30533 357 aa20.37■□□□□ 0.85
SYNGAP1-227ENST00000638142 MSX2P35548 267 aaPredicted RBP20.37■□□□□ 0.85
SYNGAP1-227ENST00000638142 COG7P83436 770 aa20.37■□□□□ 0.85
SYNGAP1-227ENST00000638142 PPP2R5DQ14738 602 aa20.37■□□□□ 0.85
SYNGAP1-227ENST00000638142 PIWIL4Q7Z3Z4 852 aaKnown RBP20.37■□□□□ 0.85
SYNGAP1-227ENST00000638142 GTF3C2Q8WUA4 911 aaPredicted RBP20.37■□□□□ 0.85
SYNGAP1-227ENST00000638142 TSGA13Q96PP4 275 aa20.37■□□□□ 0.85
SYNGAP1-227ENST00000638142 PKP2Q99959 881 aa20.37■□□□□ 0.85
SYNGAP1-227ENST00000638142 NCKIPSDQ9NZQ3 722 aa20.37■□□□□ 0.85
SYNGAP1-227ENST00000638142 OR12D3Q9UGF7 316 aa20.37■□□□□ 0.85
SYNGAP1-227ENST00000638142 CNOT11Q9UKZ1 510 aaKnown RBP20.37■□□□□ 0.85
SYNGAP1-227ENST00000638142 GNEQ9Y223 722 aaKnown RBP20.37■□□□□ 0.85
SYNGAP1-227ENST00000638142 TRIM38O00635 465 aa20.37■□□□□ 0.85
SYNGAP1-227ENST00000638142 VAPBO95292 243 aa20.37■□□□□ 0.85
SYNGAP1-227ENST00000638142 TTLL12Q14166 644 aaPredicted RBP20.37■□□□□ 0.85
SYNGAP1-227ENST00000638142 SH2D4BQ5SQS7 431 aa20.37■□□□□ 0.85
SYNGAP1-227ENST00000638142 UBXN11Q5T124 520 aa20.37■□□□□ 0.85
SYNGAP1-227ENST00000638142 CEP70Q8NHQ1 597 aa20.37■□□□□ 0.85
SYNGAP1-227ENST00000638142 CNBD2Q96M20 576 aa20.37■□□□□ 0.85
SYNGAP1-227ENST00000638142 MRPL46Q9H2W6 279 aaKnown RBP20.37■□□□□ 0.85
SYNGAP1-227ENST00000638142 WDCPQ9H6R7 721 aa20.37■□□□□ 0.85
SYNGAP1-227ENST00000638142 MRPL40Q9NQ50 206 aaKnown RBP20.37■□□□□ 0.85
SYNGAP1-227ENST00000638142 EPS15L1Q9UBC2 864 aa20.37■□□□□ 0.85
SYNGAP1-227ENST00000638142 BTBD19C9JJ37 291 aa20.36■□□□□ 0.85
SYNGAP1-227ENST00000638142 PGK1P00558 417 aa20.36■□□□□ 0.85
SYNGAP1-227ENST00000638142 PGGT1BP53609 377 aa20.36■□□□□ 0.85
SYNGAP1-227ENST00000638142 PTK2BQ14289 1009 aa20.36■□□□□ 0.85
SYNGAP1-227ENST00000638142 USP41Q3LFD5 358 aa20.36■□□□□ 0.85
SYNGAP1-227ENST00000638142 TMEM259Q4ZIN3 620 aa20.36■□□□□ 0.85
SYNGAP1-227ENST00000638142 KIAA0319Q5VV43 1072 aa20.36■□□□□ 0.85
SYNGAP1-227ENST00000638142 B3GNT6Q6ZMB0 384 aa20.36■□□□□ 0.85
SYNGAP1-227ENST00000638142 RNF148Q8N7C7 305 aa20.36■□□□□ 0.85
SYNGAP1-227ENST00000638142 CCNYL1Q8N7R7 359 aa20.36■□□□□ 0.85
SYNGAP1-227ENST00000638142 MARK4Q96L34 752 aa20.36■□□□□ 0.85
SYNGAP1-227ENST00000638142 SHROOM3Q8TF72 1996 aa20.36■□□□□ 0.85
SYNGAP1-227ENST00000638142 FAM95CA0A1B0GW59 222 aa20.36■□□□□ 0.85
SYNGAP1-227ENST00000638142 CCDC78A2IDD5 438 aa20.36■□□□□ 0.85
SYNGAP1-227ENST00000638142 STX16-NPEPL1H3BU86 382 aa20.36■□□□□ 0.85
SYNGAP1-227ENST00000638142 STRNO43815 780 aa20.36■□□□□ 0.85
SYNGAP1-227ENST00000638142 LRIG2O94898 1065 aa20.36■□□□□ 0.85
SYNGAP1-227ENST00000638142 CXCR3P49682 368 aa20.36■□□□□ 0.85
SYNGAP1-227ENST00000638142 KPNA2P52292 529 aaKnown RBP20.36■□□□□ 0.85
SYNGAP1-227ENST00000638142 MYBPC1Q00872 1141 aa20.36■□□□□ 0.85
SYNGAP1-227ENST00000638142 CREB5Q02930 508 aa20.36■□□□□ 0.85
SYNGAP1-227ENST00000638142 RAB41Q5JT25 222 aa20.36■□□□□ 0.85
SYNGAP1-227ENST00000638142 TSTD2Q5T7W7 516 aa20.36■□□□□ 0.85
SYNGAP1-227ENST00000638142 LENG1Q96BZ8 264 aaPredicted RBP20.36■□□□□ 0.85
SYNGAP1-227ENST00000638142 NXNL1Q96CM4 212 aa20.36■□□□□ 0.85
SYNGAP1-227ENST00000638142 TMA16Q96EY4 203 aaKnown RBP20.36■□□□□ 0.85
SYNGAP1-227ENST00000638142 KLHL32Q96NJ5 620 aa20.36■□□□□ 0.85
SYNGAP1-227ENST00000638142 SMOQ99835 787 aa20.36■□□□□ 0.85
SYNGAP1-227ENST00000638142 TBL1YQ9BQ87 522 aa20.36■□□□□ 0.85
SYNGAP1-227ENST00000638142 CRTAC1Q9NQ79 661 aa20.36■□□□□ 0.85
SYNGAP1-227ENST00000638142 MBLAC1A4D2B0 266 aaPredicted RBP20.35■□□□□ 0.85
SYNGAP1-227ENST00000638142 SDHDO14521 159 aa20.35■□□□□ 0.85
SYNGAP1-227ENST00000638142 TMCC1O94876 653 aa20.35■□□□□ 0.85
SYNGAP1-227ENST00000638142 FAM58BPP0C7Q3 252 aa20.35■□□□□ 0.85
SYNGAP1-227ENST00000638142 SMIM10L2AP0DMW4 78 aa20.35■□□□□ 0.85
SYNGAP1-227ENST00000638142 SMIM10L2BP0DMW5 78 aa20.35■□□□□ 0.85
SYNGAP1-227ENST00000638142 RANBP1P43487 201 aa20.35■□□□□ 0.85
SYNGAP1-227ENST00000638142 PSMD8P48556 350 aa20.35■□□□□ 0.85
SYNGAP1-227ENST00000638142 DNAJB13P59910 316 aa20.35■□□□□ 0.85
SYNGAP1-227ENST00000638142 SNX17Q15036 470 aa20.35■□□□□ 0.85
SYNGAP1-227ENST00000638142 DCLRE1AQ6PJP8 1040 aa20.35■□□□□ 0.85
SYNGAP1-227ENST00000638142 RBM44Q6ZP01 1051 aaKnown RBP20.35■□□□□ 0.85
SYNGAP1-227ENST00000638142 OTOP3Q7RTS5 596 aa20.35■□□□□ 0.85
SYNGAP1-227ENST00000638142 FAM35AQ86V20 835 aa20.35■□□□□ 0.85
SYNGAP1-227ENST00000638142 CCDC117Q8IWD4 279 aaPredicted RBP20.35■□□□□ 0.85
SYNGAP1-227ENST00000638142 TMEM102Q8N9M5 508 aaPredicted RBP20.35■□□□□ 0.85
SYNGAP1-227ENST00000638142 ASB9Q96DX5 294 aa20.35■□□□□ 0.85
SYNGAP1-227ENST00000638142 NPAS2Q99743 824 aa20.35■□□□□ 0.85
SYNGAP1-227ENST00000638142 MRPL57Q9BQC6 102 aaKnown RBP20.35■□□□□ 0.85
SYNGAP1-227ENST00000638142 MRPL1Q9BYD6 325 aaKnown RBP20.35■□□□□ 0.85
SYNGAP1-227ENST00000638142 TKTL2Q9H0I9 626 aa20.35■□□□□ 0.85
SYNGAP1-227ENST00000638142 FNDC1Q4ZHG4 1894 aaPredicted RBP20.35■□□□□ 0.85
SYNGAP1-227ENST00000638142 PLXNB2O15031 1838 aa20.35■□□□□ 0.85
SYNGAP1-227ENST00000638142 USP17L7P0C7H9 530 aa20.35■□□□□ 0.85
SYNGAP1-227ENST00000638142 MPP1Q00013 466 aa20.35■□□□□ 0.85
SYNGAP1-227ENST00000638142 NADK2Q4G0N4 442 aa20.35■□□□□ 0.85
SYNGAP1-227ENST00000638142 PM20D1Q6GTS8 502 aa20.35■□□□□ 0.85
SYNGAP1-227ENST00000638142 GPRIN1Q7Z2K8 1008 aa20.35■□□□□ 0.85
SYNGAP1-227ENST00000638142 CEP97Q8IW35 865 aa20.35■□□□□ 0.85
SYNGAP1-227ENST00000638142 DENND6AQ8IWF6 608 aa20.35■□□□□ 0.85
SYNGAP1-227ENST00000638142 PELI3Q8N2H9 469 aa20.35■□□□□ 0.85
SYNGAP1-227ENST00000638142 PTCD2Q8WV60 388 aaKnown RBP20.35■□□□□ 0.85
SYNGAP1-227ENST00000638142 TMEM40Q8WWA1 233 aa20.35■□□□□ 0.85
SYNGAP1-227ENST00000638142 IRAK4Q9NWZ3 460 aa20.35■□□□□ 0.85
SYNGAP1-227ENST00000638142 SUCOQ9UBS9 1254 aaKnown RBP20.35■□□□□ 0.85
SYNGAP1-227ENST00000638142 IPPQ9Y573 584 aa20.35■□□□□ 0.85
SYNGAP1-227ENST00000638142 A0A087X1B8 175 aa20.34■□□□□ 0.85
SYNGAP1-227ENST00000638142 ALDH16A1Q8IZ83 802 aa20.34■□□□□ 0.85
SYNGAP1-227ENST00000638142 PPHLN1Q8NEY8 458 aaKnown RBP20.34■□□□□ 0.85
SYNGAP1-227ENST00000638142 DDI1Q8WTU0 396 aa20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms