RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 TRIM9Q9C026 710 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 UFSP2Q9NUQ7 469 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 GCNT4Q9P109 453 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 SLC17A7Q9P2U7 560 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 MID2Q9UJV3 735 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 MAN2B2Q9Y2E5 1009 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 SLC45A1Q9Y2W3 748 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 HRH3Q9Y5N1 445 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 CDY1Q9Y6F8 540 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 MYH2Q9UKX2 1941 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 CYP3A7-CYP3A51PA0A087WV96 503 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 ANXA1P04083 346 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 FCGR1AP12314 374 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 IL1R1P14778 569 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 CYP3A7P24462 503 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 PSMB9P28065 219 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 MAPK4P31152 587 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 SHMT1P34896 483 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 IDUAP35475 653 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 LEPRP48357 1165 aaKnown RBP5.8□□□□□ -1.48
SCN1A-216ENST00000637968 RPL10AP62906 217 aaKnown RBP5.8□□□□□ -1.48
SCN1A-216ENST00000637968 CHRNDQ07001 517 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 PRKD1Q15139 912 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-216ENST00000637968 QPRTQ15274 297 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 DLGAP5Q15398 846 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 ZNF124Q15973 351 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 UBE2SQ16763 222 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 MGAT5BQ3V5L5 792 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 PLEKHG4Q58EX7 1191 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 MTX3Q5HYI7 312 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 TBCELQ5QJ74 424 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 GTF2IRD2BQ6EKJ0 949 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 KLHL17Q6TDP4 642 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 LINC00299Q6ZSB3 139 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 GTF2IRD2Q86UP8 949 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 REM2Q8IYK8 340 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-216ENST00000637968 LARGE2Q8N3Y3 721 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 ZCCHC9Q8N567 271 aaKnown RBP5.8□□□□□ -1.48
SCN1A-216ENST00000637968 SLC2A14Q8TDB8 520 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 CDCA5Q96FF9 252 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 FAM89AQ96GI7 184 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 PPP1R16BQ96T49 567 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 KIFC1Q9BW19 673 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 GPN2Q9H9Y4 310 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-216ENST00000637968 IGSF5Q9NSI5 407 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 TAS2R9Q9NYW1 312 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 TAS2R7Q9NYW3 318 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-216ENST00000637968 MYOM1P52179 1685 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 ROBO2Q9HCK4 1378 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 HEATR9A2RTY3 570 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 OR5K3A6NET4 321 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 STX16-NPEPL1H3BU86 382 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 TRIM38O00635 465 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 HTRA2O43464 458 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-216ENST00000637968 ZMPSTE24O75844 475 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 OLFM2O95897 454 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 CD247P20963 164 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 PSMA2P25787 234 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 ERVFC1P60507 584 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 DRAP1Q14919 205 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-216ENST00000637968 ZNF773Q6PK81 442 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 IKBIPQ70UQ0 350 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 SLC9A9Q8IVB4 645 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 PPM1NQ8N819 430 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 OR6P1Q8NGX9 317 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 PIWIL2Q8TC59 973 aaKnown RBP5.8□□□□□ -1.48
SCN1A-216ENST00000637968 DNAJA4Q8WW22 397 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-216ENST00000637968 RSAD2Q8WXG1 361 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 CNDP2Q96KP4 475 aaKnown RBP5.8□□□□□ -1.48
SCN1A-216ENST00000637968 MAGEB10Q96LZ2 347 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-216ENST00000637968 OPALINQ96PE5 141 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 KATNAL1Q9BW62 490 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 ZNF556Q9HAH1 456 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 GINS2Q9Y248 185 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 BCS1LQ9Y276 419 aa5.8□□□□□ -1.48
SCN1A-216ENST00000637968 DDX52Q9Y2R4 599 aaKnown RBP eCLIP5.8□□□□□ -1.48
SCN1A-216ENST00000637968 DDX3YO15523 660 aaKnown RBP5.79□□□□□ -1.48
SCN1A-216ENST00000637968 TPST1O60507 370 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 GCATO75600 419 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 FGF18O76093 207 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 CDK1P06493 297 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 NR2F2P24468 414 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 ACOT2P49753 483 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 AIF1P55008 147 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 ACTR2P61160 394 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 GRM1Q13255 1194 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 KIF19Q2TAC6 998 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 COLEC12Q5KU26 742 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 TTC39BQ5VTQ0 682 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-216ENST00000637968 CENPPQ6IPU0 288 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 C11orf63Q6NUN7 778 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 METTL23Q86XA0 190 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 SNX29P2Q8IUI4 249 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 DDIASQ8IXT1 998 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 CLEC4FQ8N1N0 589 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 PACRGLQ8N7B6 248 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 FBXO27Q8NI29 283 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 ZFP90Q8TF47 636 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 MTERF3Q96E29 417 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms