RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 N4BP2L1Q5TBK1 243 aaPredicted RBP15.93■□□□□ 0.14
CPSF1-213ENST00000620219 SLC8B1Q6J4K2 584 aa15.93■□□□□ 0.14
CPSF1-213ENST00000620219 NEPROQ6NW34 567 aa15.93■□□□□ 0.14
CPSF1-213ENST00000620219 GRASPQ7Z6J2 395 aaPredicted RBP15.93■□□□□ 0.14
CPSF1-213ENST00000620219 GMPRP36959 345 aa15.92■□□□□ 0.14
CPSF1-213ENST00000620219 NTHL1P78549 312 aa15.92■□□□□ 0.14
CPSF1-213ENST00000620219 GPM6BQ13491 265 aa15.92■□□□□ 0.14
CPSF1-213ENST00000620219 HNRNPDQ14103 355 aaKnown RBP15.92■□□□□ 0.14
CPSF1-213ENST00000620219 PARP15Q460N3 678 aa15.92■□□□□ 0.14
CPSF1-213ENST00000620219 GLT6D1Q7Z4J2 308 aa15.92■□□□□ 0.14
CPSF1-213ENST00000620219 KIF2BQ8N4N8 673 aa15.92■□□□□ 0.14
CPSF1-213ENST00000620219 SH3RF2Q8TEC5 729 aa15.92■□□□□ 0.14
CPSF1-213ENST00000620219 SERAC1Q96JX3 654 aa15.92■□□□□ 0.14
CPSF1-213ENST00000620219 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP15.92■□□□□ 0.14
CPSF1-213ENST00000620219 PPARGC1AQ9UBK2 798 aaKnown RBP15.92■□□□□ 0.14
CPSF1-213ENST00000620219 TEX264Q9Y6I9 313 aa15.92■□□□□ 0.14
CPSF1-213ENST00000620219 MAGEB16A2A368 324 aa15.92■□□□□ 0.14
CPSF1-213ENST00000620219 HEATR9A2RTY3 570 aa15.92■□□□□ 0.14
CPSF1-213ENST00000620219 I6L893 689 aaPredicted RBP15.92■□□□□ 0.14
CPSF1-213ENST00000620219 IGHA2P01877 340 aa15.92■□□□□ 0.14
CPSF1-213ENST00000620219 CA3P07451 260 aa15.92■□□□□ 0.14
CPSF1-213ENST00000620219 PRKD1Q15139 912 aaPredicted RBP15.92■□□□□ 0.14
CPSF1-213ENST00000620219 ATXN7L2Q5T6C5 722 aaPredicted RBP15.92■□□□□ 0.14
CPSF1-213ENST00000620219 ANKLE1Q8NAG6 615 aa15.92■□□□□ 0.14
CPSF1-213ENST00000620219 SLC44A1Q8WWI5 657 aa15.92■□□□□ 0.14
CPSF1-213ENST00000620219 SCG3Q8WXD2 468 aaKnown RBP15.92■□□□□ 0.14
CPSF1-213ENST00000620219 HDAC10Q969S8 669 aa15.92■□□□□ 0.14
CPSF1-213ENST00000620219 RNF38Q9H0F5 515 aa15.92■□□□□ 0.14
CPSF1-213ENST00000620219 PKP3Q9Y446 797 aa15.92■□□□□ 0.14
CPSF1-213ENST00000620219 F5P12259 2224 aa15.92■□□□□ 0.14
CPSF1-213ENST00000620219 A0A096LPK6 155 aa15.92■□□□□ 0.14
CPSF1-213ENST00000620219 NCF2P19878 526 aaPredicted RBP15.92■□□□□ 0.14
CPSF1-213ENST00000620219 TAZQ16635 292 aa15.92■□□□□ 0.14
CPSF1-213ENST00000620219 CKAP2Q8WWK9 683 aa15.92■□□□□ 0.14
CPSF1-213ENST00000620219 NT5C3BQ969T7 300 aa15.92■□□□□ 0.14
CPSF1-213ENST00000620219 OXNAD1Q96HP4 312 aaPredicted RBP15.92■□□□□ 0.14
CPSF1-213ENST00000620219 CWH43Q9H720 699 aa15.92■□□□□ 0.14
CPSF1-213ENST00000620219 CYP4F12Q9HCS2 524 aa15.92■□□□□ 0.14
CPSF1-213ENST00000620219 ACSS2Q9NR19 701 aa15.92■□□□□ 0.14
CPSF1-213ENST00000620219 CHRM3P20309 590 aa15.92■□□□□ 0.14
CPSF1-213ENST00000620219 YBEYP58557 167 aaPredicted RBP15.92■□□□□ 0.14
CPSF1-213ENST00000620219 STX3Q13277 289 aa15.92■□□□□ 0.14
CPSF1-213ENST00000620219 PDAP1Q13442 181 aaKnown RBP15.92■□□□□ 0.14
CPSF1-213ENST00000620219 CSHL1Q14406 222 aa15.92■□□□□ 0.14
CPSF1-213ENST00000620219 PPM1JQ5JR12 505 aa15.92■□□□□ 0.14
CPSF1-213ENST00000620219 LRRC49Q8IUZ0 686 aa15.92■□□□□ 0.14
CPSF1-213ENST00000620219 CMTM8Q8IZV2 173 aa15.92■□□□□ 0.14
CPSF1-213ENST00000620219 PPM1EQ8WY54 764 aa15.92■□□□□ 0.14
CPSF1-213ENST00000620219 E2F7Q96AV8 911 aa15.92■□□□□ 0.14
CPSF1-213ENST00000620219 PGAP3Q96FM1 320 aaPredicted RBP15.92■□□□□ 0.14
CPSF1-213ENST00000620219 GTSE1Q9NYZ3 720 aa15.92■□□□□ 0.14
CPSF1-213ENST00000620219 BAIAP2L1Q9UHR4 511 aa15.92■□□□□ 0.14
CPSF1-213ENST00000620219 RUVBL2Q9Y230 463 aaKnown RBP15.92■□□□□ 0.14
CPSF1-213ENST00000620219 HIDE1A8MVS5 230 aa15.91■□□□□ 0.14
CPSF1-213ENST00000620219 DIAPH2O60879 1101 aa15.91■□□□□ 0.14
CPSF1-213ENST00000620219 DNAJC6O75061 913 aa15.91■□□□□ 0.14
CPSF1-213ENST00000620219 STC2O76061 302 aa15.91■□□□□ 0.14
CPSF1-213ENST00000620219 CXCL10P02778 98 aa15.91■□□□□ 0.14
CPSF1-213ENST00000620219 GLDCP23378 1020 aa15.91■□□□□ 0.14
CPSF1-213ENST00000620219 CDH4P55283 916 aa15.91■□□□□ 0.14
CPSF1-213ENST00000620219 TTC31Q49AM3 519 aaPredicted RBP15.91■□□□□ 0.14
CPSF1-213ENST00000620219 STXBP5Q5T5C0 1151 aa15.91■□□□□ 0.14
CPSF1-213ENST00000620219 LIMS2Q7Z4I7 341 aa15.91■□□□□ 0.14
CPSF1-213ENST00000620219 ARID3BQ8IVW6 561 aaPredicted RBP15.91■□□□□ 0.14
CPSF1-213ENST00000620219 CALML6Q8TD86 181 aa15.91■□□□□ 0.14
CPSF1-213ENST00000620219 MAGEB18Q96M61 343 aa15.91■□□□□ 0.14
CPSF1-213ENST00000620219 FOXN2P32314 431 aa15.91■□□□□ 0.14
CPSF1-213ENST00000620219 NDST2P52849 883 aa15.91■□□□□ 0.14
CPSF1-213ENST00000620219 PGGT1BP53609 377 aa15.91■□□□□ 0.14
CPSF1-213ENST00000620219 TRPM8Q7Z2W7 1104 aa15.91■□□□□ 0.14
CPSF1-213ENST00000620219 SIGLEC10Q96LC7 697 aa15.91■□□□□ 0.14
CPSF1-213ENST00000620219 SLC22A12Q96S37 553 aa15.91■□□□□ 0.14
CPSF1-213ENST00000620219 TTC1Q99614 292 aa15.91■□□□□ 0.14
CPSF1-213ENST00000620219 C11orf84Q9BUA3 381 aaPredicted RBP15.91■□□□□ 0.14
CPSF1-213ENST00000620219 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP15.91■□□□□ 0.14
CPSF1-213ENST00000620219 ITGA2BP08514 1039 aa15.91■□□□□ 0.14
CPSF1-213ENST00000620219 IGFBP4P22692 258 aa15.91■□□□□ 0.14
CPSF1-213ENST00000620219 ARFIP2P53365 341 aa15.91■□□□□ 0.14
CPSF1-213ENST00000620219 RAB33AQ14088 237 aa15.91■□□□□ 0.14
CPSF1-213ENST00000620219 PACS1Q6VY07 963 aa15.91■□□□□ 0.14
CPSF1-213ENST00000620219 SPATS2Q86XZ4 545 aaKnown RBP15.91■□□□□ 0.14
CPSF1-213ENST00000620219 CCT6BQ92526 530 aa15.91■□□□□ 0.14
CPSF1-213ENST00000620219 KLHL29Q96CT2 875 aa15.91■□□□□ 0.14
CPSF1-213ENST00000620219 ERP27Q96DN0 273 aa15.91■□□□□ 0.14
CPSF1-213ENST00000620219 SPATA17Q96L03 361 aa15.91■□□□□ 0.14
CPSF1-213ENST00000620219 ADGRE3Q9BY15 652 aa15.91■□□□□ 0.14
CPSF1-213ENST00000620219 EVLQ9UI08 416 aaPredicted RBP15.91■□□□□ 0.14
CPSF1-213ENST00000620219 MSRAQ9UJ68 235 aa15.91■□□□□ 0.14
CPSF1-213ENST00000620219 LCHNA4D1U4 455 aa15.9■□□□□ 0.14
CPSF1-213ENST00000620219 TIMM44O43615 452 aa15.9■□□□□ 0.14
CPSF1-213ENST00000620219 GLP2RO95838 553 aa15.9■□□□□ 0.14
CPSF1-213ENST00000620219 STMN1P16949 149 aa15.9■□□□□ 0.14
CPSF1-213ENST00000620219 ITGB6P18564 788 aa15.9■□□□□ 0.14
CPSF1-213ENST00000620219 TEAD2Q15562 447 aa15.9■□□□□ 0.14
CPSF1-213ENST00000620219 GET4Q7L5D6 327 aaPredicted RBP15.9■□□□□ 0.14
CPSF1-213ENST00000620219 TNS4Q8IZW8 715 aa15.9■□□□□ 0.14
CPSF1-213ENST00000620219 CNTD1Q8N815 330 aa15.9■□□□□ 0.14
CPSF1-213ENST00000620219 PNPLA1Q8N8W4 532 aa15.9■□□□□ 0.14
CPSF1-213ENST00000620219 SLC25A51Q9H1U9 297 aa15.9■□□□□ 0.14
CPSF1-213ENST00000620219 ZDHHC6Q9H6R6 413 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms