RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 SOX1O00570 391 aaPredicted RBP14.46□□□□□ -0.09
USP39-220ENST00000613444 GAB4Q2WGN9 574 aa14.46□□□□□ -0.09
USP39-220ENST00000613444 TTMPQ5BVD1 217 aa14.46□□□□□ -0.09
USP39-220ENST00000613444 PITRM1Q5JRX3 1037 aa14.46□□□□□ -0.09
USP39-220ENST00000613444 VITQ6UXI7 678 aa14.46□□□□□ -0.09
USP39-220ENST00000613444 LINC00523Q86TU6 105 aa14.46□□□□□ -0.09
USP39-220ENST00000613444 CCDC117Q8IWD4 279 aaPredicted RBP14.46□□□□□ -0.09
USP39-220ENST00000613444 PALM2Q8IXS6 379 aa14.46□□□□□ -0.09
USP39-220ENST00000613444 ZFYVE19Q96K21 471 aa14.46□□□□□ -0.09
USP39-220ENST00000613444 FICDQ9BVA6 458 aa14.46□□□□□ -0.09
USP39-220ENST00000613444 CINPQ9BW66 212 aaPredicted RBP14.46□□□□□ -0.09
USP39-220ENST00000613444 VPS37BQ9H9H4 285 aa14.46□□□□□ -0.09
USP39-220ENST00000613444 TMBIM4Q9HC24 238 aa14.46□□□□□ -0.09
USP39-220ENST00000613444 ZC3H7BQ9UGR2 993 aaKnown RBP14.46□□□□□ -0.09
USP39-220ENST00000613444 RABGEF1Q9UJ41 708 aa14.46□□□□□ -0.09
USP39-220ENST00000613444 CXorf51AA0A1B0GTR3 108 aa14.46□□□□□ -0.1
USP39-220ENST00000613444 OTOL1A6NHN0 477 aaPredicted RBP14.46□□□□□ -0.1
USP39-220ENST00000613444 K7ERQ8 282 aa14.46□□□□□ -0.1
USP39-220ENST00000613444 HOXC11O43248 304 aaPredicted RBP14.46□□□□□ -0.1
USP39-220ENST00000613444 OPA1O60313 960 aa14.46□□□□□ -0.1
USP39-220ENST00000613444 GCAP28676 217 aa14.46□□□□□ -0.1
USP39-220ENST00000613444 IFFO1Q0D2I5 559 aa14.46□□□□□ -0.1
USP39-220ENST00000613444 CDH17Q12864 832 aa14.46□□□□□ -0.1
USP39-220ENST00000613444 CERCAMQ5T4B2 595 aa14.46□□□□□ -0.1
USP39-220ENST00000613444 STEAP4Q687X5 459 aa14.46□□□□□ -0.1
USP39-220ENST00000613444 UNC5AQ6ZN44 842 aa14.46□□□□□ -0.1
USP39-220ENST00000613444 BBS5Q8N3I7 341 aa14.46□□□□□ -0.1
USP39-220ENST00000613444 DDX51Q8N8A6 666 aaKnown RBP eCLIP14.46□□□□□ -0.1
USP39-220ENST00000613444 EPS8L3Q8TE67 593 aaKnown RBP14.46□□□□□ -0.1
USP39-220ENST00000613444 EXOC2Q96KP1 924 aa14.46□□□□□ -0.1
USP39-220ENST00000613444 POMKQ9H5K3 350 aa14.46□□□□□ -0.1
USP39-220ENST00000613444 ARNT2Q9HBZ2 717 aa14.46□□□□□ -0.1
USP39-220ENST00000613444 NOD2Q9HC29 1040 aa14.46□□□□□ -0.1
USP39-220ENST00000613444 GGA2Q9UJY4 613 aa14.46□□□□□ -0.1
USP39-220ENST00000613444 LOC285095A0A1B0GVY8 99 aa14.45□□□□□ -0.1
USP39-220ENST00000613444 TCRBV9S1A1TA0A576 114 aa14.45□□□□□ -0.1
USP39-220ENST00000613444 TRIM24O15164 1050 aa14.45□□□□□ -0.1
USP39-220ENST00000613444 SMAD6O43541 496 aaKnown RBP14.45□□□□□ -0.1
USP39-220ENST00000613444 CPP00450 1065 aa14.45□□□□□ -0.1
USP39-220ENST00000613444 ARSAP15289 507 aa14.45□□□□□ -0.1
USP39-220ENST00000613444 CTSOP43234 321 aaPredicted RBP14.45□□□□□ -0.1
USP39-220ENST00000613444 CHRNA4P43681 627 aa14.45□□□□□ -0.1
USP39-220ENST00000613444 SERPINH1P50454 418 aaKnown RBP14.45□□□□□ -0.1
USP39-220ENST00000613444 FCHO2Q0JRZ9 810 aa14.45□□□□□ -0.1
USP39-220ENST00000613444 MSLNQ13421 630 aaPredicted RBP14.45□□□□□ -0.1
USP39-220ENST00000613444 STAT4Q14765 748 aa14.45□□□□□ -0.1
USP39-220ENST00000613444 SLC14A2Q15849 920 aa14.45□□□□□ -0.1
USP39-220ENST00000613444 ADIPOR2Q86V24 386 aa14.45□□□□□ -0.1
USP39-220ENST00000613444 DNAAF3Q8N9W5 541 aa14.45□□□□□ -0.1
USP39-220ENST00000613444 SMRP1Q8NCR6 262 aa14.45□□□□□ -0.1
USP39-220ENST00000613444 STAMBPL1Q96FJ0 436 aa14.45□□□□□ -0.1
USP39-220ENST00000613444 SLC2A11Q9BYW1 496 aa14.45□□□□□ -0.1
USP39-220ENST00000613444 PLA2G2FQ9BZM2 168 aa14.45□□□□□ -0.1
USP39-220ENST00000613444 ROPN1BQ9BZX4 212 aaPredicted RBP14.45□□□□□ -0.1
USP39-220ENST00000613444 ROPN1Q9HAT0 212 aaPredicted RBP14.45□□□□□ -0.1
USP39-220ENST00000613444 ZFP14Q9HCL3 533 aa14.45□□□□□ -0.1
USP39-220ENST00000613444 EURLQ9NYK6 297 aa14.45□□□□□ -0.1
USP39-220ENST00000613444 OGFRQ9NZT2 677 aa14.45□□□□□ -0.1
USP39-220ENST00000613444 FCF1Q9Y324 198 aaKnown RBP14.45□□□□□ -0.1
USP39-220ENST00000613444 MAD1L1Q9Y6D9 718 aa14.45□□□□□ -0.1
USP39-220ENST00000613444 ZNF821O75541 412 aaPredicted RBP14.44□□□□□ -0.1
USP39-220ENST00000613444 CISD3P0C7P0 127 aa14.44□□□□□ -0.1
USP39-220ENST00000613444 ADH5P11766 374 aa14.44□□□□□ -0.1
USP39-220ENST00000613444 PABPC1P11940 636 aaKnown RBP14.44□□□□□ -0.1
USP39-220ENST00000613444 LAMP2P13473 410 aa14.44□□□□□ -0.1
USP39-220ENST00000613444 TPH1P17752 444 aa14.44□□□□□ -0.1
USP39-220ENST00000613444 NPY2RP49146 381 aa14.44□□□□□ -0.1
USP39-220ENST00000613444 NSUN2Q08J23 767 aaKnown RBP eCLIP14.44□□□□□ -0.1
USP39-220ENST00000613444 GPS2Q13227 327 aa14.44□□□□□ -0.1
USP39-220ENST00000613444 PCSK7Q16549 785 aa14.44□□□□□ -0.1
USP39-220ENST00000613444 LONRF1Q17RB8 773 aa14.44□□□□□ -0.1
USP39-220ENST00000613444 KRT71Q3SY84 523 aa14.44□□□□□ -0.1
USP39-220ENST00000613444 TMEM215Q68D42 235 aa14.44□□□□□ -0.1
USP39-220ENST00000613444 RETSATQ6NUM9 610 aa14.44□□□□□ -0.1
USP39-220ENST00000613444 C12orf40Q86WS4 652 aa14.44□□□□□ -0.1
USP39-220ENST00000613444 ETFBKMTQ8IXQ9 262 aa14.44□□□□□ -0.1
USP39-220ENST00000613444 NAT16Q8N8M0 369 aa14.44□□□□□ -0.1
USP39-220ENST00000613444 ZNF557Q8N988 423 aaPredicted RBP14.44□□□□□ -0.1
USP39-220ENST00000613444 FBF1Q8TES7 1133 aa14.44□□□□□ -0.1
USP39-220ENST00000613444 CFAP36Q96G28 342 aa14.44□□□□□ -0.1
USP39-220ENST00000613444 RIPOR3Q96MK2 946 aa14.44□□□□□ -0.1
USP39-220ENST00000613444 XPO6Q96QU8 1125 aaKnown RBP14.44□□□□□ -0.1
USP39-220ENST00000613444 NUDCD1Q96RS6 583 aa14.44□□□□□ -0.1
USP39-220ENST00000613444 EBF3Q9H4W6 596 aa14.44□□□□□ -0.1
USP39-220ENST00000613444 ACSS3Q9H6R3 686 aa14.44□□□□□ -0.1
USP39-220ENST00000613444 HPS4Q9NQG7 708 aa14.44□□□□□ -0.1
USP39-220ENST00000613444 BFARQ9NZS9 450 aa14.44□□□□□ -0.1
USP39-220ENST00000613444 AP3B1O00203 1094 aa14.44□□□□□ -0.1
USP39-220ENST00000613444 INSIG1O15503 277 aa14.44□□□□□ -0.1
USP39-220ENST00000613444 SPAG6O75602 509 aa14.44□□□□□ -0.1
USP39-220ENST00000613444 ATXN1LP0C7T5 689 aaKnown RBP14.44□□□□□ -0.1
USP39-220ENST00000613444 KDELC2Q7Z4H8 507 aa14.44□□□□□ -0.1
USP39-220ENST00000613444 RNF135Q8IUD6 432 aa14.44□□□□□ -0.1
USP39-220ENST00000613444 MFSD6LQ8IWD5 586 aa14.44□□□□□ -0.1
USP39-220ENST00000613444 KRT222Q8N1A0 295 aa14.44□□□□□ -0.1
USP39-220ENST00000613444 TRIB3Q96RU7 358 aa14.44□□□□□ -0.1
USP39-220ENST00000613444 FSD1LQ9BXM9 530 aa14.44□□□□□ -0.1
USP39-220ENST00000613444 IL22Q9GZX6 179 aa14.44□□□□□ -0.1
USP39-220ENST00000613444 HS3ST2Q9Y278 367 aa14.44□□□□□ -0.1
USP39-220ENST00000613444 RASGRF2O14827 1237 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms