RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 TMEM74Q96NL1 305 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 HEPHQ9BQS7 1158 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 B3GNT4Q9C0J1 378 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 CPNE5Q9HCH3 593 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 UBE2TQ9NPD8 197 aaPredicted RBP6.42□□□□□ -1.38
CUX1-220ENST00000607092 GPR27Q9NS67 375 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 UCKL1Q9NWZ5 548 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 AKAP7Q9P0M2 348 aaPredicted RBP6.42□□□□□ -1.38
CUX1-220ENST00000607092 APOBEC3BQ9UH17 382 aaKnown RBP6.42□□□□□ -1.38
CUX1-220ENST00000607092 VPS51Q9UID3 782 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 ACSL6Q9UKU0 697 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 VANGL2Q9ULK5 521 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 DOLKQ9UPQ8 538 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 SATB2Q9UPW6 733 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 PCDHB11Q9Y5F2 797 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 OR51B4Q9Y5P0 310 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 TP53BP1Q12888 1972 aaPredicted RBP6.42□□□□□ -1.38
CUX1-220ENST00000607092 PRRC2CQ9Y520 2896 aaKnown RBP6.41□□□□□ -1.38
CUX1-220ENST00000607092 SYNJ2BP-COX16A0A087WUM0 186 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 ZSCAN5CA6NGD5 496 aaPredicted RBP6.41□□□□□ -1.38
CUX1-220ENST00000607092 DRGXA6NNA5 263 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 RNF225M0QZC1 329 aaPredicted RBP6.41□□□□□ -1.38
CUX1-220ENST00000607092 PLD2O14939 933 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 PAGE1O75459 146 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 LEFTY1O75610 366 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 TNFSF15O95150 251 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 GIMD1P0DJR0 217 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 ADRB3P13945 408 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 CD46P15529 392 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 HTR1BP28222 390 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 SERPINH1P50454 418 aaKnown RBP6.41□□□□□ -1.38
CUX1-220ENST00000607092 PEX5P50542 639 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 SLC6A3Q01959 620 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 PNOCQ13519 176 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 PDE1CQ14123 709 aaPredicted RBP6.41□□□□□ -1.38
CUX1-220ENST00000607092 FZD2Q14332 565 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 CDKN3Q16667 212 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 ARL13BQ3SXY8 428 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 POM121L1PQ3SYA9 428 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 CARD16Q5EG05 197 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 TMEM164Q5U3C3 297 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 DENND1BQ6P3S1 775 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 ATG14Q6ZNE5 492 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 USP53Q70EK8 1073 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 C14orf80Q86SX3 495 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 CIR1Q86X95 450 aaPredicted RBP6.41□□□□□ -1.38
CUX1-220ENST00000607092 TRIM59Q8IWR1 403 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 LMO3Q8TAP4 145 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 GRIN3AQ8TCU5 1115 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 LMX1AQ8TE12 382 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 CASKIN2Q8WXE0 1202 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 SGF29Q96ES7 293 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 MYEOVQ96EZ4 313 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 PGAP3Q96FM1 320 aaPredicted RBP6.41□□□□□ -1.38
CUX1-220ENST00000607092 GFM1Q96RP9 751 aaKnown RBP6.41□□□□□ -1.38
CUX1-220ENST00000607092 HAPLN3Q96S86 360 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 MYOCQ99972 504 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 SEMA3CQ99985 751 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 ZSWIM1Q9BR11 485 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 BOCQ9BWV1 1114 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 C1QTNF2Q9BXJ5 285 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 INTS2Q9H0H0 1204 aaKnown RBP6.41□□□□□ -1.38
CUX1-220ENST00000607092 SIK2Q9H0K1 926 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 OSBPL2Q9H1P3 480 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 PDCL3Q9H2J4 239 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 DONSONQ9NYP3 566 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 COX16Q9P0S2 106 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 IL17BQ9UHF5 180 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 XPO7Q9UIA9 1087 aaKnown RBP6.41□□□□□ -1.38
CUX1-220ENST00000607092 PADI4Q9UM07 663 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 HPCAL4Q9UM19 191 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 PCDHGC3Q9UN70 934 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 FADS3Q9Y5Q0 445 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 HS3ST4Q9Y661 456 aa6.41□□□□□ -1.38
CUX1-220ENST00000607092 MYLKQ15746 1914 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 GTPBP10A4D1E9 387 aaKnown RBP6.4□□□□□ -1.38
CUX1-220ENST00000607092 CDRT15L2A8MXV6 281 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 MUSKO15146 869 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 NVLO15381 856 aaKnown RBP6.4□□□□□ -1.38
CUX1-220ENST00000607092 PPFIA2O75334 1257 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 ADCY5O95622 1261 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 POP4O95707 220 aaKnown RBP6.4□□□□□ -1.38
CUX1-220ENST00000607092 PAK4O96013 591 aaPredicted RBP6.4□□□□□ -1.38
CUX1-220ENST00000607092 GSRP00390 522 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 CTSLP07711 333 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 JMJD7P0C870 316 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 LIPCP11150 499 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 TGM2P21980 687 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 KELP23276 732 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 RRM1P23921 792 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 USP8P40818 1118 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 CXCR3P49682 368 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 METAP1P53582 386 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 CLDN2P57739 230 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 PFN3P60673 137 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 SNRPD1P62314 119 aaKnown RBP6.4□□□□□ -1.38
CUX1-220ENST00000607092 PPARDQ03181 441 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 DEUP1Q05D60 604 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 ELP6Q0PNE2 266 aa6.4□□□□□ -1.38
CUX1-220ENST00000607092 PEX6Q13608 980 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms