RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 TRAF3IP1Q8TDR0 691 aaPredicted RBP19.67■□□□□ 0.74
UPF1-212ENST00000601689 TCEAL3Q969E4 200 aa19.67■□□□□ 0.74
UPF1-212ENST00000601689 HDAC8Q9BY41 377 aa19.67■□□□□ 0.74
UPF1-212ENST00000601689 SERGEFQ9UGK8 458 aa19.67■□□□□ 0.74
UPF1-212ENST00000601689 IPO11Q9UI26 975 aaKnown RBP19.67■□□□□ 0.74
UPF1-212ENST00000601689 CFAP54Q96N23 3096 aa19.67■□□□□ 0.74
UPF1-212ENST00000601689 CD160O95971 181 aa19.66■□□□□ 0.74
UPF1-212ENST00000601689 CTSLP07711 333 aa19.66■□□□□ 0.74
UPF1-212ENST00000601689 ENGP17813 658 aa19.66■□□□□ 0.74
UPF1-212ENST00000601689 XPAP23025 273 aaPredicted RBP19.66■□□□□ 0.74
UPF1-212ENST00000601689 ITGB7P26010 798 aa19.66■□□□□ 0.74
UPF1-212ENST00000601689 STPG1Q5TH74 334 aa19.66■□□□□ 0.74
UPF1-212ENST00000601689 ZSCAN30Q86W11 494 aa19.66■□□□□ 0.74
UPF1-212ENST00000601689 RHOT1Q8IXI2 618 aa19.66■□□□□ 0.74
UPF1-212ENST00000601689 ATPAF2Q8N5M1 289 aa19.66■□□□□ 0.74
UPF1-212ENST00000601689 SPC24Q8NBT2 197 aa19.66■□□□□ 0.74
UPF1-212ENST00000601689 RAB7BQ96AH8 199 aa19.66■□□□□ 0.74
UPF1-212ENST00000601689 ZNF830Q96NB3 372 aaPredicted RBP19.66■□□□□ 0.74
UPF1-212ENST00000601689 ZNF599Q96NL3 588 aa19.66■□□□□ 0.74
UPF1-212ENST00000601689 GTPBP2Q9BX10 602 aaKnown RBP19.66■□□□□ 0.74
UPF1-212ENST00000601689 DDX56Q9NY93 547 aaKnown RBP19.66■□□□□ 0.74
UPF1-212ENST00000601689 SBDSQ9Y3A5 250 aaKnown RBP eCLIP19.66■□□□□ 0.74
UPF1-212ENST00000601689 ACTL7AQ9Y615 435 aa19.66■□□□□ 0.74
UPF1-212ENST00000601689 A0A0A6YYK5 440 aaPredicted RBP19.65■□□□□ 0.74
UPF1-212ENST00000601689 A0A1W2PPC4 97 aa19.65■□□□□ 0.74
UPF1-212ENST00000601689 NEMP1O14524 444 aa19.65■□□□□ 0.74
UPF1-212ENST00000601689 ARHGAP33O14559 1287 aa19.65■□□□□ 0.74
UPF1-212ENST00000601689 SLC30A4O14863 429 aa19.65■□□□□ 0.74
UPF1-212ENST00000601689 ZNF821O75541 412 aaPredicted RBP19.65■□□□□ 0.74
UPF1-212ENST00000601689 NEBLO76041 1014 aa19.65■□□□□ 0.74
UPF1-212ENST00000601689 PCDH8O95206 1070 aa19.65■□□□□ 0.74
UPF1-212ENST00000601689 GSDMDP57764 484 aa19.65■□□□□ 0.74
UPF1-212ENST00000601689 SETMARQ53H47 684 aaPredicted RBP19.65■□□□□ 0.74
UPF1-212ENST00000601689 ZNF805Q5CZA5 627 aa19.65■□□□□ 0.74
UPF1-212ENST00000601689 AFMIDQ63HM1 303 aa19.65■□□□□ 0.74
UPF1-212ENST00000601689 TXNRD3NBQ6F5E7 133 aa19.65■□□□□ 0.74
UPF1-212ENST00000601689 GDPD4Q6W3E5 623 aa19.65■□□□□ 0.74
UPF1-212ENST00000601689 KIAA1328Q86T90 577 aa19.65■□□□□ 0.74
UPF1-212ENST00000601689 CAPN10Q9HC96 672 aa19.65■□□□□ 0.74
UPF1-212ENST00000601689 SEPT3Q9UH03 358 aa19.65■□□□□ 0.74
UPF1-212ENST00000601689 DMTF1Q9Y222 760 aa19.65■□□□□ 0.74
UPF1-212ENST00000601689 WASF2Q9Y6W5 498 aa19.65■□□□□ 0.74
UPF1-212ENST00000601689 ZNF292O60281 2723 aa19.64■□□□□ 0.73
UPF1-212ENST00000601689 SOWAHDA6NJG2 315 aa19.64■□□□□ 0.73
UPF1-212ENST00000601689 J3KR12 359 aa19.64■□□□□ 0.73
UPF1-212ENST00000601689 NRDCO43847 1150 aa19.64■□□□□ 0.73
UPF1-212ENST00000601689 GDF9O60383 454 aa19.64■□□□□ 0.73
UPF1-212ENST00000601689 MAGEC1O60732 1142 aa19.64■□□□□ 0.73
UPF1-212ENST00000601689 MX2P20592 715 aa19.64■□□□□ 0.73
UPF1-212ENST00000601689 HSPA9P38646 679 aaKnown RBP19.64■□□□□ 0.73
UPF1-212ENST00000601689 MAPK8P45983 427 aa19.64■□□□□ 0.73
UPF1-212ENST00000601689 HADHBP55084 474 aaKnown RBP19.64■□□□□ 0.73
UPF1-212ENST00000601689 C21orf59P57076 290 aa19.64■□□□□ 0.73
UPF1-212ENST00000601689 RACK1P63244 317 aaKnown RBP19.64■□□□□ 0.73
UPF1-212ENST00000601689 DPYSL3Q14195 570 aa19.64■□□□□ 0.73
UPF1-212ENST00000601689 ZNF235Q14590 738 aa19.64■□□□□ 0.73
UPF1-212ENST00000601689 IFI16Q16666 785 aaKnown RBP19.64■□□□□ 0.73
UPF1-212ENST00000601689 ANKRD20A8PQ5CZ79 823 aa19.64■□□□□ 0.73
UPF1-212ENST00000601689 LRRC38Q5VT99 294 aa19.64■□□□□ 0.73
UPF1-212ENST00000601689 AGBL4Q5VU57 503 aa19.64■□□□□ 0.73
UPF1-212ENST00000601689 TIGD7Q6NT04 549 aaPredicted RBP19.64■□□□□ 0.73
UPF1-212ENST00000601689 OR6K2Q8NGY2 324 aa19.64■□□□□ 0.73
UPF1-212ENST00000601689 FAM71BQ8TC56 605 aa19.64■□□□□ 0.73
UPF1-212ENST00000601689 FAM131CQ96AQ9 280 aa19.64■□□□□ 0.73
UPF1-212ENST00000601689 RMDN1Q96DB5 314 aa19.64■□□□□ 0.73
UPF1-212ENST00000601689 FEM1CQ96JP0 617 aa19.64■□□□□ 0.73
UPF1-212ENST00000601689 CPEB1Q9BZB8 566 aaKnown RBP19.64■□□□□ 0.73
UPF1-212ENST00000601689 KLC2Q9H0B6 622 aa19.64■□□□□ 0.73
UPF1-212ENST00000601689 AASDHPPTQ9NRN7 309 aa19.64■□□□□ 0.73
UPF1-212ENST00000601689 DLL3Q9NYJ7 618 aa19.64■□□□□ 0.73
UPF1-212ENST00000601689 MFHAS1Q9Y4C4 1052 aa19.64■□□□□ 0.73
UPF1-212ENST00000601689 SHROOM3Q8TF72 1996 aa19.63■□□□□ 0.73
UPF1-212ENST00000601689 ADAMTS9Q9P2N4 1935 aa19.63■□□□□ 0.73
UPF1-212ENST00000601689 LRRD1A4D1F6 860 aa19.63■□□□□ 0.73
UPF1-212ENST00000601689 OPHN1O60890 802 aa19.63■□□□□ 0.73
UPF1-212ENST00000601689 CER1O95813 267 aa19.63■□□□□ 0.73
UPF1-212ENST00000601689 UGT2B4P06133 528 aa19.63■□□□□ 0.73
UPF1-212ENST00000601689 TNNT1P13805 278 aa19.63■□□□□ 0.73
UPF1-212ENST00000601689 ADRB3P13945 408 aa19.63■□□□□ 0.73
UPF1-212ENST00000601689 ZFXP17010 805 aaPredicted RBP19.63■□□□□ 0.73
UPF1-212ENST00000601689 FECHP22830 423 aa19.63■□□□□ 0.73
UPF1-212ENST00000601689 KDELR1P24390 212 aa19.63■□□□□ 0.73
UPF1-212ENST00000601689 GRIA4P48058 902 aa19.63■□□□□ 0.73
UPF1-212ENST00000601689 TAS2R40P59535 323 aa19.63■□□□□ 0.73
UPF1-212ENST00000601689 NSUN2Q08J23 767 aaKnown RBP eCLIP19.63■□□□□ 0.73
UPF1-212ENST00000601689 LBRQ14739 615 aaKnown RBP19.63■□□□□ 0.73
UPF1-212ENST00000601689 CYTH1Q15438 398 aa19.63■□□□□ 0.73
UPF1-212ENST00000601689 ATXN7L2Q5T6C5 722 aaPredicted RBP19.63■□□□□ 0.73
UPF1-212ENST00000601689 DGLUCYQ7Z3D6 616 aa19.63■□□□□ 0.73
UPF1-212ENST00000601689 TRIM69Q86WT6 500 aa19.63■□□□□ 0.73
UPF1-212ENST00000601689 VSIG1Q86XK7 387 aa19.63■□□□□ 0.73
UPF1-212ENST00000601689 ARHGAP12Q8IWW6 846 aa19.63■□□□□ 0.73
UPF1-212ENST00000601689 NPWQ8N729 165 aa19.63■□□□□ 0.73
UPF1-212ENST00000601689 TSC1Q92574 1164 aa19.63■□□□□ 0.73
UPF1-212ENST00000601689 ARRDC3Q96B67 414 aa19.63■□□□□ 0.73
UPF1-212ENST00000601689 KLHL32Q96NJ5 620 aa19.63■□□□□ 0.73
UPF1-212ENST00000601689 TUBGCP5Q96RT8 1024 aa19.63■□□□□ 0.73
UPF1-212ENST00000601689 PDFQ9HBH1 243 aa19.63■□□□□ 0.73
UPF1-212ENST00000601689 C4orf47A7E2U8 309 aa19.62■□□□□ 0.73
UPF1-212ENST00000601689 PLK4O00444 970 aa19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms