RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 TRIM61Q5EBN2 209 aa12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 TMEM196Q5HYL7 178 aa12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 ARTNQ5T4W7 220 aa12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 AFMIDQ63HM1 303 aa12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 CCDC70Q6NSX1 233 aa12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 GSTA5Q7RTV2 222 aa12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 LRRC49Q8IUZ0 686 aa12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 ADGRG2Q8IZP9 1017 aa12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 CCDC33Q8N5R6 958 aa12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 CHFRQ96EP1 664 aa12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 HMCESQ96FZ2 354 aa12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 OLFM3Q96PB7 478 aa12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 QKIQ96PU8 341 aaKnown RBP eCLIP12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 FAM83CQ9BQN1 747 aa12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 SLC2A11Q9BYW1 496 aa12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 SLC39A8Q9C0K1 460 aa12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 DDX47Q9H0S4 455 aaKnown RBP12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 CLMPQ9H6B4 373 aa12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 LRRC19Q9H756 370 aa12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 NDFIP2Q9NV92 336 aa12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 ZNF212Q9UDV6 495 aa12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 MBD1Q9UIS9 605 aaPredicted RBP12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 HPCAL4Q9UM19 191 aa12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 ZNF148Q9UQR1 794 aa12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 TBC1D30Q9Y2I9 924 aa12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 GON4LQ3T8J9 2241 aa12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 CFAP69A5D8W1 941 aa12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 SGK1O00141 431 aa12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 CACNG3O60359 315 aa12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 NEBLO76041 1014 aa12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 GAS8O95995 478 aa12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 BCKDHBP21953 392 aa12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 COILP38432 576 aaPredicted RBP12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 GARSP41250 739 aaKnown RBP12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 PAPOLAP51003 745 aaKnown RBP12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 TNK2Q07912 1038 aa12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 AP1B1Q10567 949 aa12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 SLC10A2Q12908 348 aaPredicted RBP12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 SLC12A1Q13621 1099 aa12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 ITPRIPL2Q3MIP1 535 aa12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 SLC45A4Q5BKX6 768 aa12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 RNF219Q5W0B1 726 aaPredicted RBP12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 FSTL4Q6MZW2 842 aa12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 CXorf57Q6NSI4 855 aaKnown RBP12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 TIGD7Q6NT04 549 aaPredicted RBP12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 C8orf74Q6P047 294 aa12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 DRICH1Q6PGQ1 229 aaPredicted RBP12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 RHBDF2Q6PJF5 856 aa12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 CCDC137Q6PK04 289 aaKnown RBP12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 ARHGAP12Q8IWW6 846 aa12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 CCDC89Q8N998 374 aa12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 NETO2Q8NC67 525 aa12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 CCDC26Q8TAB7 109 aa12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 FIBINQ8TAL6 211 aa12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 SLC35B2Q8TB61 432 aa12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 NSMCE1Q8WV22 266 aa12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 HDAC11Q96DB2 347 aa12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 KRT12Q99456 494 aa12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 SPON2Q9BUD6 331 aa12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 KLC2Q9H0B6 622 aa12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 NOL6Q9H6R4 1146 aaKnown RBP12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 ECT2Q9H8V3 914 aa12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 SP110Q9HB58 689 aa12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 ATP13A1Q9HD20 1204 aa12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 HPS4Q9NQG7 708 aa12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 DNAJC17Q9NVM6 304 aaKnown RBP12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 KIAA1522Q9P206 1035 aaPredicted RBP12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 FEZ2Q9UHY8 353 aaPredicted RBP12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 VPS28Q9UK41 221 aa12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 DNPEPQ9ULA0 475 aa12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 DOCK4Q8N1I0 1966 aa12.28□□□□□ -0.44
SHKBP1-213ENST00000597325 COL6A6A6NMZ7 2263 aa12.27□□□□□ -0.44
SHKBP1-213ENST00000597325 ADAMTS9Q9P2N4 1935 aa12.27□□□□□ -0.44
SHKBP1-213ENST00000597325 PTPRQQ9UMZ3 2332 aa12.27□□□□□ -0.44
SHKBP1-213ENST00000597325 BSNQ9UPA5 3926 aa12.27□□□□□ -0.44
SHKBP1-213ENST00000597325 RIOK3O14730 519 aaKnown RBP12.27□□□□□ -0.45
SHKBP1-213ENST00000597325 MTSS1O43312 755 aa12.27□□□□□ -0.45
SHKBP1-213ENST00000597325 RNF40O75150 1001 aa12.27□□□□□ -0.45
SHKBP1-213ENST00000597325 ECEL1O95672 775 aa12.27□□□□□ -0.45
SHKBP1-213ENST00000597325 ITGAVP06756 1048 aa12.27□□□□□ -0.45
SHKBP1-213ENST00000597325 ACTN2P35609 894 aa12.27□□□□□ -0.45
SHKBP1-213ENST00000597325 CSKP41240 450 aa12.27□□□□□ -0.45
SHKBP1-213ENST00000597325 DGKGP49619 791 aa12.27□□□□□ -0.45
SHKBP1-213ENST00000597325 DR1Q01658 176 aa12.27□□□□□ -0.45
SHKBP1-213ENST00000597325 ZNF33AQ06730 810 aa12.27□□□□□ -0.45
SHKBP1-213ENST00000597325 PPIDQ08752 370 aaKnown RBP12.27□□□□□ -0.45
SHKBP1-213ENST00000597325 SERINC3Q13530 473 aa12.27□□□□□ -0.45
SHKBP1-213ENST00000597325 DHX34Q14147 1143 aaKnown RBP12.27□□□□□ -0.45
SHKBP1-213ENST00000597325 PRKD1Q15139 912 aaPredicted RBP12.27□□□□□ -0.45
SHKBP1-213ENST00000597325 PPP1R7Q15435 360 aa12.27□□□□□ -0.45
SHKBP1-213ENST00000597325 OASLQ15646 514 aaKnown RBP12.27□□□□□ -0.45
SHKBP1-213ENST00000597325 PREPLQ4J6C6 727 aaPredicted RBP12.27□□□□□ -0.45
SHKBP1-213ENST00000597325 SLC23A3Q6PIS1 610 aa12.27□□□□□ -0.45
SHKBP1-213ENST00000597325 C11orf74Q86VG3 221 aa12.27□□□□□ -0.45
SHKBP1-213ENST00000597325 CCDC13Q8IYE1 715 aa12.27□□□□□ -0.45
SHKBP1-213ENST00000597325 NAT16Q8N8M0 369 aa12.27□□□□□ -0.45
SHKBP1-213ENST00000597325 WFDC5Q8TCV5 224 aa12.27□□□□□ -0.45
SHKBP1-213ENST00000597325 PIGKQ92643 395 aa12.27□□□□□ -0.45
SHKBP1-213ENST00000597325 ARHGEF2Q92974 986 aaKnown RBP12.27□□□□□ -0.45
SHKBP1-213ENST00000597325 LGMNQ99538 433 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms