RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 CFIP05156 583 aa14.78□□□□□ -0.04
VRK3-206ENST00000594090 IGHV4-34P06331 123 aa14.78□□□□□ -0.04
VRK3-206ENST00000594090 GNSP15586 552 aa14.78□□□□□ -0.04
VRK3-206ENST00000594090 KDELR1P24390 212 aa14.78□□□□□ -0.04
VRK3-206ENST00000594090 ITGB7P26010 798 aa14.78□□□□□ -0.04
VRK3-206ENST00000594090 VAV2P52735 878 aa14.78□□□□□ -0.04
VRK3-206ENST00000594090 IRX4P78413 519 aa14.78□□□□□ -0.04
VRK3-206ENST00000594090 ARHGAP8P85298 464 aa14.78□□□□□ -0.04
VRK3-206ENST00000594090 RFTN1Q14699 578 aaPredicted RBP14.78□□□□□ -0.04
VRK3-206ENST00000594090 PAFAH1B3Q15102 231 aaKnown RBP14.78□□□□□ -0.04
VRK3-206ENST00000594090 MYLK3Q32MK0 819 aa14.78□□□□□ -0.04
VRK3-206ENST00000594090 C11orf63Q6NUN7 778 aa14.78□□□□□ -0.04
VRK3-206ENST00000594090 ERN2Q76MJ5 926 aaKnown RBP14.78□□□□□ -0.04
VRK3-206ENST00000594090 ZCCHC9Q8N567 271 aaKnown RBP14.78□□□□□ -0.04
VRK3-206ENST00000594090 ATPAF2Q8N5M1 289 aa14.78□□□□□ -0.04
VRK3-206ENST00000594090 EDEM2Q9BV94 578 aa14.78□□□□□ -0.04
VRK3-206ENST00000594090 NUSAP1Q9BXS6 441 aaKnown RBP14.78□□□□□ -0.04
VRK3-206ENST00000594090 OSBPL1AQ9BXW6 950 aa14.78□□□□□ -0.04
VRK3-206ENST00000594090 HDAC8Q9BY41 377 aa14.78□□□□□ -0.04
VRK3-206ENST00000594090 MIR1-1HGQ9H1L0 117 aa14.78□□□□□ -0.04
VRK3-206ENST00000594090 GOLPH3Q9H4A6 298 aa14.78□□□□□ -0.04
VRK3-206ENST00000594090 EP300Q09472 2414 aaPredicted RBP14.78□□□□□ -0.04
VRK3-206ENST00000594090 DMXL1Q9Y485 3027 aa14.78□□□□□ -0.04
VRK3-206ENST00000594090 LAMA1P25391 3075 aa14.78□□□□□ -0.04
VRK3-206ENST00000594090 GVINP1Q7Z2Y8 2422 aa14.78□□□□□ -0.04
VRK3-206ENST00000594090 PCDH15Q96QU1 1955 aa14.78□□□□□ -0.04
VRK3-206ENST00000594090 PLXNA2O75051 1894 aa14.77□□□□□ -0.04
VRK3-206ENST00000594090 LOC105378220A0A1B0GUY1 285 aaPredicted RBP14.77□□□□□ -0.04
VRK3-206ENST00000594090 C3orf70A6NLC5 250 aaPredicted RBP14.77□□□□□ -0.04
VRK3-206ENST00000594090 BTNL10A8MVZ5 291 aa14.77□□□□□ -0.04
VRK3-206ENST00000594090 PJA2O43164 708 aa14.77□□□□□ -0.04
VRK3-206ENST00000594090 UGT2B4P06133 528 aa14.77□□□□□ -0.04
VRK3-206ENST00000594090 SERPINF2P08697 491 aa14.77□□□□□ -0.04
VRK3-206ENST00000594090 TNNT1P13805 278 aa14.77□□□□□ -0.04
VRK3-206ENST00000594090 CCR5P51681 352 aa14.77□□□□□ -0.04
VRK3-206ENST00000594090 NEK3P51956 506 aa14.77□□□□□ -0.04
VRK3-206ENST00000594090 TAS2R38P59533 333 aa14.77□□□□□ -0.04
VRK3-206ENST00000594090 PPP2CBP62714 309 aa14.77□□□□□ -0.04
VRK3-206ENST00000594090 PPP2CAP67775 309 aa14.77□□□□□ -0.04
VRK3-206ENST00000594090 RAD51Q06609 339 aa14.77□□□□□ -0.04
VRK3-206ENST00000594090 CCDC15Q0P6D6 951 aa14.77□□□□□ -0.04
VRK3-206ENST00000594090 TMCO4Q5TGY1 634 aa14.77□□□□□ -0.04
VRK3-206ENST00000594090 PARS2Q7L3T8 475 aaKnown RBP14.77□□□□□ -0.04
VRK3-206ENST00000594090 KIAA1328Q86T90 577 aa14.77□□□□□ -0.04
VRK3-206ENST00000594090 VSIG1Q86XK7 387 aa14.77□□□□□ -0.04
VRK3-206ENST00000594090 PQLC3Q8N755 202 aa14.77□□□□□ -0.04
VRK3-206ENST00000594090 TPCN2Q8NHX9 752 aa14.77□□□□□ -0.04
VRK3-206ENST00000594090 C1orf216Q8TAB5 229 aa14.77□□□□□ -0.04
VRK3-206ENST00000594090 NETO1Q8TDF5 533 aa14.77□□□□□ -0.04
VRK3-206ENST00000594090 CALR3Q96L12 384 aaKnown RBP14.77□□□□□ -0.04
VRK3-206ENST00000594090 ZNF599Q96NL3 588 aa14.77□□□□□ -0.04
VRK3-206ENST00000594090 RNF157Q96PX1 679 aa14.77□□□□□ -0.04
VRK3-206ENST00000594090 ORAI3Q9BRQ5 295 aa14.77□□□□□ -0.04
VRK3-206ENST00000594090 CINPQ9BW66 212 aaPredicted RBP14.77□□□□□ -0.04
VRK3-206ENST00000594090 LACRTQ9GZZ8 138 aa14.77□□□□□ -0.04
VRK3-206ENST00000594090 CAPN10Q9HC96 672 aa14.77□□□□□ -0.04
VRK3-206ENST00000594090 DDX56Q9NY93 547 aaKnown RBP14.77□□□□□ -0.04
VRK3-206ENST00000594090 SLC6A14Q9UN76 642 aa14.77□□□□□ -0.04
VRK3-206ENST00000594090 ALG6Q9Y672 507 aa14.77□□□□□ -0.04
VRK3-206ENST00000594090 SLCO1B1Q9Y6L6 691 aa14.77□□□□□ -0.04
VRK3-206ENST00000594090 DUSP10Q9Y6W6 482 aa14.77□□□□□ -0.04
VRK3-206ENST00000594090 TBC1D3DA0A087WVF3 549 aa14.76□□□□□ -0.05
VRK3-206ENST00000594090 TBC1D3IA0A087WXS9 549 aa14.76□□□□□ -0.05
VRK3-206ENST00000594090 TBC1D3EA0A087X179 549 aa14.76□□□□□ -0.05
VRK3-206ENST00000594090 TBC1D3KA0A087X1G2 549 aa14.76□□□□□ -0.05
VRK3-206ENST00000594090 A0A1B0GTW7 788 aa14.76□□□□□ -0.05
VRK3-206ENST00000594090 TBC1D3FA6NER0 549 aaPredicted RBP14.76□□□□□ -0.05
VRK3-206ENST00000594090 TBC1D3LB9A6J9 549 aa14.76□□□□□ -0.05
VRK3-206ENST00000594090 BCAT2O15382 392 aaPredicted RBP14.76□□□□□ -0.05
VRK3-206ENST00000594090 INSIG1O15503 277 aa14.76□□□□□ -0.05
VRK3-206ENST00000594090 PSTPIP1O43586 416 aa14.76□□□□□ -0.05
VRK3-206ENST00000594090 MAFKO60675 156 aa14.76□□□□□ -0.05
VRK3-206ENST00000594090 PEX11BO96011 259 aa14.76□□□□□ -0.05
VRK3-206ENST00000594090 TBC1D3HP0C7X1 549 aa14.76□□□□□ -0.05
VRK3-206ENST00000594090 ADRB3P13945 408 aa14.76□□□□□ -0.05
VRK3-206ENST00000594090 CD27P26842 260 aa14.76□□□□□ -0.05
VRK3-206ENST00000594090 RGRP47804 291 aa14.76□□□□□ -0.05
VRK3-206ENST00000594090 LBRQ14739 615 aaKnown RBP14.76□□□□□ -0.05
VRK3-206ENST00000594090 ZNF805Q5CZA5 627 aa14.76□□□□□ -0.05
VRK3-206ENST00000594090 TBC1D3GQ6DHY5 549 aa14.76□□□□□ -0.05
VRK3-206ENST00000594090 TBC1D3CQ6IPX1 549 aa14.76□□□□□ -0.05
VRK3-206ENST00000594090 TBC1D3Q8IZP1 549 aaPredicted RBP14.76□□□□□ -0.05
VRK3-206ENST00000594090 TSEN2Q8NCE0 465 aaKnown RBP14.76□□□□□ -0.05
VRK3-206ENST00000594090 DESI2Q9BSY9 194 aa14.76□□□□□ -0.05
VRK3-206ENST00000594090 PREBQ9HCU5 417 aa14.76□□□□□ -0.05
VRK3-206ENST00000594090 FSCN3Q9NQT6 498 aa14.76□□□□□ -0.05
VRK3-206ENST00000594090 CDV3Q9UKY7 258 aaKnown RBP14.76□□□□□ -0.05
VRK3-206ENST00000594090 TPX2Q9ULW0 747 aaKnown RBP14.76□□□□□ -0.05
VRK3-206ENST00000594090 A0A1W2PPC4 97 aa14.75□□□□□ -0.05
VRK3-206ENST00000594090 LATO43561 262 aa14.75□□□□□ -0.05
VRK3-206ENST00000594090 MAP3K6O95382 1288 aa14.75□□□□□ -0.05
VRK3-206ENST00000594090 ENGP17813 658 aa14.75□□□□□ -0.05
VRK3-206ENST00000594090 GARSP41250 739 aaKnown RBP14.75□□□□□ -0.05
VRK3-206ENST00000594090 LIMK1P53667 647 aa14.75□□□□□ -0.05
VRK3-206ENST00000594090 GBE1Q04446 702 aa14.75□□□□□ -0.05
VRK3-206ENST00000594090 SLC10A7Q0GE19 358 aa14.75□□□□□ -0.05
VRK3-206ENST00000594090 GALNT2Q10471 571 aa14.75□□□□□ -0.05
VRK3-206ENST00000594090 RSPO4Q2I0M5 234 aaPredicted RBP14.75□□□□□ -0.05
VRK3-206ENST00000594090 ODF2Q5BJF6 829 aa14.75□□□□□ -0.05
VRK3-206ENST00000594090 GDPD4Q6W3E5 623 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms