RNA–Protein interactions for RNA: ENST00000594067.5

LIG1-206, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-206ENST00000594067 MT-CYBP00156 380 aaPredicted RBP16.72■□□□□ 0.27
LIG1-206ENST00000594067 PPARGP37231 505 aaPredicted RBP16.72■□□□□ 0.27
LIG1-206ENST00000594067 GJA9P57773 515 aa16.72■□□□□ 0.27
LIG1-206ENST00000594067 SLC12A1Q13621 1099 aa16.72■□□□□ 0.27
LIG1-206ENST00000594067 FLOT2Q14254 428 aa16.72■□□□□ 0.27
LIG1-206ENST00000594067 ZNF423Q2M1K9 1284 aa16.72■□□□□ 0.27
LIG1-206ENST00000594067 MYLK3Q32MK0 819 aa16.72■□□□□ 0.27
LIG1-206ENST00000594067 TMEM259Q4ZIN3 620 aa16.72■□□□□ 0.27
LIG1-206ENST00000594067 INTS6LQ5JSJ4 861 aaKnown RBP16.72■□□□□ 0.27
LIG1-206ENST00000594067 LRRC8EQ6NSJ5 796 aa16.72■□□□□ 0.27
LIG1-206ENST00000594067 SPNS2Q8IVW8 549 aa16.72■□□□□ 0.27
LIG1-206ENST00000594067 LILRA2Q8N149 483 aa16.72■□□□□ 0.27
LIG1-206ENST00000594067 AHI1Q8N157 1196 aa16.72■□□□□ 0.27
LIG1-206ENST00000594067 CCNYL1Q8N7R7 359 aa16.72■□□□□ 0.27
LIG1-206ENST00000594067 ZSCAN18Q8TBC5 510 aaPredicted RBP16.72■□□□□ 0.27
LIG1-206ENST00000594067 RDH11Q8TC12 318 aa16.72■□□□□ 0.27
LIG1-206ENST00000594067 STYXQ8WUJ0 223 aa16.72■□□□□ 0.27
LIG1-206ENST00000594067 LRGUKQ96M69 825 aa16.72■□□□□ 0.27
LIG1-206ENST00000594067 KIFC1Q9BW19 673 aa16.72■□□□□ 0.27
LIG1-206ENST00000594067 GRIP2Q9C0E4 1043 aa16.72■□□□□ 0.27
LIG1-206ENST00000594067 CNGB3Q9NQW8 809 aa16.72■□□□□ 0.27
LIG1-206ENST00000594067 PLK2Q9NYY3 685 aa16.72■□□□□ 0.27
LIG1-206ENST00000594067 TSC2P49815 1807 aa16.71■□□□□ 0.27
LIG1-206ENST00000594067 TMEM233B4DJY2 109 aa16.71■□□□□ 0.27
LIG1-206ENST00000594067 STX16-NPEPL1H3BU86 382 aa16.71■□□□□ 0.27
LIG1-206ENST00000594067 SRGAP2BP0DMP2 458 aa16.71■□□□□ 0.27
LIG1-206ENST00000594067 LRPAP1P30533 357 aa16.71■□□□□ 0.27
LIG1-206ENST00000594067 MS4A2Q01362 244 aa16.71■□□□□ 0.27
LIG1-206ENST00000594067 CEACAM7Q14002 265 aa16.71■□□□□ 0.27
LIG1-206ENST00000594067 PIGGQ5H8A4 983 aa16.71■□□□□ 0.27
LIG1-206ENST00000594067 RARS2Q5T160 578 aaKnown RBP16.71■□□□□ 0.27
LIG1-206ENST00000594067 RWDD4Q6NW29 188 aaKnown RBP16.71■□□□□ 0.27
LIG1-206ENST00000594067 TMEM126BQ8IUX1 230 aa16.71■□□□□ 0.27
LIG1-206ENST00000594067 CEP97Q8IW35 865 aa16.71■□□□□ 0.27
LIG1-206ENST00000594067 NXNL1Q96CM4 212 aa16.71■□□□□ 0.27
LIG1-206ENST00000594067 SLC10A4Q96EP9 437 aa16.71■□□□□ 0.27
LIG1-206ENST00000594067 CNBD2Q96M20 576 aa16.71■□□□□ 0.27
LIG1-206ENST00000594067 VAT1Q99536 393 aa16.71■□□□□ 0.27
LIG1-206ENST00000594067 FTHL17Q9BXU8 183 aa16.71■□□□□ 0.27
LIG1-206ENST00000594067 MRPS26Q9BYN8 205 aaKnown RBP16.71■□□□□ 0.27
LIG1-206ENST00000594067 SENP6Q9GZR1 1112 aaPredicted RBP16.71■□□□□ 0.27
LIG1-206ENST00000594067 ZNF696Q9H7X3 374 aa16.71■□□□□ 0.27
LIG1-206ENST00000594067 APPL1Q9UKG1 709 aa16.71■□□□□ 0.27
LIG1-206ENST00000594067 BTBD19C9JJ37 291 aa16.71■□□□□ 0.26
LIG1-206ENST00000594067 DFFAO00273 331 aa16.71■□□□□ 0.26
LIG1-206ENST00000594067 HNRNPRO43390 633 aaKnown RBP16.71■□□□□ 0.26
LIG1-206ENST00000594067 ZNF189O75820 626 aaPredicted RBP16.71■□□□□ 0.26
LIG1-206ENST00000594067 VAPBO95292 243 aa16.71■□□□□ 0.26
LIG1-206ENST00000594067 PGK1P00558 417 aa16.71■□□□□ 0.26
LIG1-206ENST00000594067 F2P00734 622 aa16.71■□□□□ 0.26
LIG1-206ENST00000594067 ATP6V1B1P15313 513 aa16.71■□□□□ 0.26
LIG1-206ENST00000594067 HADHAP40939 763 aa16.71■□□□□ 0.26
LIG1-206ENST00000594067 DPP6P42658 865 aa16.71■□□□□ 0.26
LIG1-206ENST00000594067 MFSD10Q14728 455 aa16.71■□□□□ 0.26
LIG1-206ENST00000594067 IQSEC1Q6DN90 963 aa16.71■□□□□ 0.26
LIG1-206ENST00000594067 MFSD6LQ8IWD5 586 aa16.71■□□□□ 0.26
LIG1-206ENST00000594067 IPMKQ8NFU5 416 aa16.71■□□□□ 0.26
LIG1-206ENST00000594067 NPLOC4Q8TAT6 608 aa16.71■□□□□ 0.26
LIG1-206ENST00000594067 RNF34Q969K3 372 aa16.71■□□□□ 0.26
LIG1-206ENST00000594067 SGF29Q96ES7 293 aa16.71■□□□□ 0.26
LIG1-206ENST00000594067 ZFRQ96KR1 1074 aaKnown RBP16.71■□□□□ 0.26
LIG1-206ENST00000594067 COPS7BQ9H9Q2 264 aaPredicted RBP16.71■□□□□ 0.26
LIG1-206ENST00000594067 GNEQ9Y223 722 aaKnown RBP16.71■□□□□ 0.26
LIG1-206ENST00000594067 PLXNB2O15031 1838 aa16.7■□□□□ 0.26
LIG1-206ENST00000594067 PDCD11Q14690 1871 aaKnown RBP16.7■□□□□ 0.26
LIG1-206ENST00000594067 MYOCOSA0A1B0GUC4 107 aa16.7■□□□□ 0.26
LIG1-206ENST00000594067 TNFAIP8O95379 198 aa16.7■□□□□ 0.26
LIG1-206ENST00000594067 NSUN2Q08J23 767 aaKnown RBP eCLIP16.7■□□□□ 0.26
LIG1-206ENST00000594067 MYBPC3Q14896 1274 aa16.7■□□□□ 0.26
LIG1-206ENST00000594067 ESRP1Q6NXG1 681 aaKnown RBP16.7■□□□□ 0.26
LIG1-206ENST00000594067 IYDQ6PHW0 289 aa16.7■□□□□ 0.26
LIG1-206ENST00000594067 PAOXQ6QHF9 649 aa16.7■□□□□ 0.26
LIG1-206ENST00000594067 CPSF7Q8N684 471 aaKnown RBP16.7■□□□□ 0.26
LIG1-206ENST00000594067 ADCY4Q8NFM4 1077 aa16.7■□□□□ 0.26
LIG1-206ENST00000594067 ITFG2Q969R8 447 aa16.7■□□□□ 0.26
LIG1-206ENST00000594067 PPP1R10Q96QC0 940 aaKnown RBP16.7■□□□□ 0.26
LIG1-206ENST00000594067 ZNF385DQ9H6B1 395 aa16.7■□□□□ 0.26
LIG1-206ENST00000594067 DDX18Q9NVP1 670 aaKnown RBP16.7■□□□□ 0.26
LIG1-206ENST00000594067 NSMCE4AQ9NXX6 385 aa16.7■□□□□ 0.26
LIG1-206ENST00000594067 RNF181Q9P0P0 153 aa16.7■□□□□ 0.26
LIG1-206ENST00000594067 ACOT9Q9Y305 439 aa16.7■□□□□ 0.26
LIG1-206ENST00000594067 SHROOM3Q8TF72 1996 aa16.7■□□□□ 0.26
LIG1-206ENST00000594067 CCDC160A6NGH7 325 aa16.7■□□□□ 0.26
LIG1-206ENST00000594067 TARM1B6A8C7 271 aa16.7■□□□□ 0.26
LIG1-206ENST00000594067 CXCR3P49682 368 aa16.7■□□□□ 0.26
LIG1-206ENST00000594067 AFF1P51825 1210 aaKnown RBP16.7■□□□□ 0.26
LIG1-206ENST00000594067 ZFP1Q6P2D0 407 aa16.7■□□□□ 0.26
LIG1-206ENST00000594067 BHLHA9Q7RTU4 235 aa16.7■□□□□ 0.26
LIG1-206ENST00000594067 TAC4Q86UU9 113 aa16.7■□□□□ 0.26
LIG1-206ENST00000594067 BHLHE22Q8NFJ8 381 aaPredicted RBP16.7■□□□□ 0.26
LIG1-206ENST00000594067 DPF3Q92784 378 aa16.7■□□□□ 0.26
LIG1-206ENST00000594067 PGAP3Q96FM1 320 aaPredicted RBP16.7■□□□□ 0.26
LIG1-206ENST00000594067 PRPF18Q99633 342 aaKnown RBP16.7■□□□□ 0.26
LIG1-206ENST00000594067 SIK2Q9H0K1 926 aa16.7■□□□□ 0.26
LIG1-206ENST00000594067 TSPYL2Q9H2G4 693 aaPredicted RBP16.7■□□□□ 0.26
LIG1-206ENST00000594067 VPS28Q9UK41 221 aa16.7■□□□□ 0.26
LIG1-206ENST00000594067 FAM95CA0A1B0GW59 222 aa16.69■□□□□ 0.26
LIG1-206ENST00000594067 CAPNS1P04632 268 aa16.69■□□□□ 0.26
LIG1-206ENST00000594067 CDKL1Q00532 357 aa16.69■□□□□ 0.26
LIG1-206ENST00000594067 ART3Q13508 389 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms