RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 ARNT2Q9HBZ2 717 aa20.12■□□□□ 0.81
TRIM47-204ENST00000587339 IL1RAPL1Q9NZN1 696 aa20.12■□□□□ 0.81
TRIM47-204ENST00000587339 VPS28Q9UK41 221 aa20.12■□□□□ 0.81
TRIM47-204ENST00000587339 CCL26Q9Y258 94 aa20.12■□□□□ 0.81
TRIM47-204ENST00000587339 CCDC195A0A1B0GUA6 201 aa20.11■□□□□ 0.81
TRIM47-204ENST00000587339 PRPF4O43172 522 aaKnown RBP eCLIP20.11■□□□□ 0.819e-7■■■□□ 16.9
TRIM47-204ENST00000587339 ERVK-10P10266 1014 aa20.11■□□□□ 0.81
TRIM47-204ENST00000587339 NAB1Q13506 487 aa20.11■□□□□ 0.81
TRIM47-204ENST00000587339 FRG1Q14331 258 aaKnown RBP20.11■□□□□ 0.81
TRIM47-204ENST00000587339 IHHQ14623 411 aa20.11■□□□□ 0.81
TRIM47-204ENST00000587339 LRRC14Q15048 493 aa20.11■□□□□ 0.81
TRIM47-204ENST00000587339 MPPE1Q53F39 396 aa20.11■□□□□ 0.81
TRIM47-204ENST00000587339 MPP7Q5T2T1 576 aa20.11■□□□□ 0.81
TRIM47-204ENST00000587339 ALG1LQ6GMV1 187 aa20.11■□□□□ 0.81
TRIM47-204ENST00000587339 TPGS1Q6ZTW0 290 aa20.11■□□□□ 0.81
TRIM47-204ENST00000587339 GRASPQ7Z6J2 395 aaPredicted RBP20.11■□□□□ 0.81
TRIM47-204ENST00000587339 RASSF3Q86WH2 238 aa20.11■□□□□ 0.81
TRIM47-204ENST00000587339 PPHLN1Q8NEY8 458 aaKnown RBP20.11■□□□□ 0.81
TRIM47-204ENST00000587339 DYDC1Q8WWB3 177 aa20.11■□□□□ 0.81
TRIM47-204ENST00000587339 MGME1Q9BQP7 344 aa20.11■□□□□ 0.81
TRIM47-204ENST00000587339 FEM1AQ9BSK4 669 aa20.11■□□□□ 0.81
TRIM47-204ENST00000587339 PRKD2Q9BZL6 878 aa20.11■□□□□ 0.81
TRIM47-204ENST00000587339 EPN3Q9H201 632 aa20.11■□□□□ 0.81
TRIM47-204ENST00000587339 LAMA3Q16787 3333 aa20.11■□□□□ 0.81
TRIM47-204ENST00000587339 MYO7AQ13402 2215 aa20.1■□□□□ 0.81
TRIM47-204ENST00000587339 E2F8A0AVK6 867 aa20.1■□□□□ 0.81
TRIM47-204ENST00000587339 SRRM3A6NNA2 597 aaPredicted RBP20.1■□□□□ 0.81
TRIM47-204ENST00000587339 TRIM49D1C9J1S8 452 aa20.1■□□□□ 0.81
TRIM47-204ENST00000587339 GJB3O75712 270 aa20.1■□□□□ 0.81
TRIM47-204ENST00000587339 SERPINF2P08697 491 aa20.1■□□□□ 0.81
TRIM47-204ENST00000587339 NMBRP28336 390 aa20.1■□□□□ 0.81
TRIM47-204ENST00000587339 MZF1P28698 734 aaPredicted RBP20.1■□□□□ 0.81
TRIM47-204ENST00000587339 SERPINB9P50453 376 aa20.1■□□□□ 0.81
TRIM47-204ENST00000587339 PKN3Q6P5Z2 889 aa20.1■□□□□ 0.81
TRIM47-204ENST00000587339 SLC25A41Q8N5S1 370 aa20.1■□□□□ 0.81
TRIM47-204ENST00000587339 PTCD2Q8WV60 388 aaKnown RBP20.1■□□□□ 0.81
TRIM47-204ENST00000587339 ALKBH8Q96BT7 664 aaKnown RBP20.1■□□□□ 0.81
TRIM47-204ENST00000587339 ZNF778Q96MU6 729 aa20.1■□□□□ 0.81
TRIM47-204ENST00000587339 SSU72Q9NP77 194 aaKnown RBP20.1■□□□□ 0.81
TRIM47-204ENST00000587339 TDP1Q9NUW8 608 aa20.1■□□□□ 0.81
TRIM47-204ENST00000587339 TXNDC16Q9P2K2 825 aa20.1■□□□□ 0.81
TRIM47-204ENST00000587339 GBF1Q92538 1859 aa20.1■□□□□ 0.81
TRIM47-204ENST00000587339 SOBPA7XYQ1 873 aa20.1■□□□□ 0.81
TRIM47-204ENST00000587339 GOLGA8RI6L899 631 aa20.1■□□□□ 0.81
TRIM47-204ENST00000587339 TYROBPO43914 113 aa20.1■□□□□ 0.81
TRIM47-204ENST00000587339 CA4P22748 312 aa20.1■□□□□ 0.81
TRIM47-204ENST00000587339 SEC24CP53992 1094 aa20.1■□□□□ 0.81
TRIM47-204ENST00000587339 SLC18A1P54219 525 aa20.1■□□□□ 0.81
TRIM47-204ENST00000587339 NTHL1P78549 312 aa20.1■□□□□ 0.81
TRIM47-204ENST00000587339 ARF5P84085 180 aa20.1■□□□□ 0.81
TRIM47-204ENST00000587339 SLC1A5Q15758 541 aa20.1■□□□□ 0.81
TRIM47-204ENST00000587339 SMAD1Q15797 465 aaKnown RBP20.1■□□□□ 0.81
TRIM47-204ENST00000587339 ADGRD2Q7Z7M1 963 aa20.1■□□□□ 0.81
TRIM47-204ENST00000587339 WFDC5Q8TCV5 224 aa20.1■□□□□ 0.81
TRIM47-204ENST00000587339 BCAS4Q8TDM0 211 aa20.1■□□□□ 0.81
TRIM47-204ENST00000587339 MTBPQ96DY7 904 aa20.1■□□□□ 0.81
TRIM47-204ENST00000587339 SGSM3Q96HU1 749 aa20.1■□□□□ 0.81
TRIM47-204ENST00000587339 RABEP2Q9H5N1 569 aa20.1■□□□□ 0.81
TRIM47-204ENST00000587339 MLXIPLQ9NP71 852 aa20.1■□□□□ 0.81
TRIM47-204ENST00000587339 PLK2Q9NYY3 685 aa20.1■□□□□ 0.81
TRIM47-204ENST00000587339 SLC17A6Q9P2U8 582 aa20.1■□□□□ 0.81
TRIM47-204ENST00000587339 CDH23Q9H251 3354 aa20.09■□□□□ 0.81
TRIM47-204ENST00000587339 SNAP91O60641 907 aa20.09■□□□□ 0.81
TRIM47-204ENST00000587339 CNTFP26441 200 aa20.09■□□□□ 0.81
TRIM47-204ENST00000587339 CSKP41240 450 aa20.09■□□□□ 0.81
TRIM47-204ENST00000587339 PRSS36Q5K4E3 855 aa20.09■□□□□ 0.81
TRIM47-204ENST00000587339 TAX1BP1Q86VP1 789 aa20.09■□□□□ 0.81
TRIM47-204ENST00000587339 USP13Q92995 863 aaPredicted RBP20.09■□□□□ 0.81
TRIM47-204ENST00000587339 IFT43Q96FT9 208 aa20.09■□□□□ 0.81
TRIM47-204ENST00000587339 SERAC1Q96JX3 654 aa20.09■□□□□ 0.81
TRIM47-204ENST00000587339 KLF6Q99612 283 aaPredicted RBP20.09■□□□□ 0.81
TRIM47-204ENST00000587339 ZMYND15Q9H091 742 aa20.09■□□□□ 0.81
TRIM47-204ENST00000587339 C20orf96Q9NUD7 363 aaPredicted RBP20.09■□□□□ 0.81
TRIM47-204ENST00000587339 TCAF1Q9Y4C2 921 aa20.09■□□□□ 0.81
TRIM47-204ENST00000587339 OR51B4Q9Y5P0 310 aa20.09■□□□□ 0.81
TRIM47-204ENST00000587339 LOC285095A0A1B0GVY8 99 aa20.08■□□□□ 0.81
TRIM47-204ENST00000587339 CCDC78A2IDD5 438 aa20.08■□□□□ 0.81
TRIM47-204ENST00000587339 GMNCA6NCL1 334 aa20.08■□□□□ 0.81
TRIM47-204ENST00000587339 ZNF197O14709 1029 aa20.08■□□□□ 0.81
TRIM47-204ENST00000587339 CYBBP04839 570 aa20.08■□□□□ 0.81
TRIM47-204ENST00000587339 ADRA1DP25100 572 aa20.08■□□□□ 0.81
TRIM47-204ENST00000587339 RPA3P35244 121 aaPredicted RBP20.08■□□□□ 0.81
TRIM47-204ENST00000587339 SERPINH1P50454 418 aaKnown RBP20.08■□□□□ 0.81
TRIM47-204ENST00000587339 BMPR2Q13873 1038 aa20.08■□□□□ 0.81
TRIM47-204ENST00000587339 MROH9Q5TGP6 573 aa20.08■□□□□ 0.81
TRIM47-204ENST00000587339 LINGO4Q6UY18 593 aa20.08■□□□□ 0.81
TRIM47-204ENST00000587339 PACS1Q6VY07 963 aa20.08■□□□□ 0.81
TRIM47-204ENST00000587339 KCNMB4Q86W47 210 aa20.08■□□□□ 0.81
TRIM47-204ENST00000587339 ZNF707Q96C28 371 aaPredicted RBP20.08■□□□□ 0.81
TRIM47-204ENST00000587339 PBX4Q9BYU1 374 aa20.08■□□□□ 0.81
TRIM47-204ENST00000587339 TLE6Q9H808 572 aa20.08■□□□□ 0.81
TRIM47-204ENST00000587339 DOCK6Q96HP0 2047 aa20.08■□□□□ 0.81
TRIM47-204ENST00000587339 ZMPSTE24O75844 475 aa20.08■□□□□ 0.8
TRIM47-204ENST00000587339 SCNN1BP51168 640 aa20.08■□□□□ 0.8
TRIM47-204ENST00000587339 CDK18Q07002 472 aa20.08■□□□□ 0.8
TRIM47-204ENST00000587339 CYTH1Q15438 398 aa20.08■□□□□ 0.8
TRIM47-204ENST00000587339 HSP90AA5PQ58FG0 334 aa20.08■□□□□ 0.8
TRIM47-204ENST00000587339 BANPQ8N9N5 519 aa20.08■□□□□ 0.8
TRIM47-204ENST00000587339 DCAF4L2Q8NA75 395 aa20.08■□□□□ 0.8
TRIM47-204ENST00000587339 ALG14Q96F25 216 aa20.08■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms