RNA–Protein interactions for RNA: ENST00000586792.5

ZNF540-204, Transcript of zinc finger protein 540, human

TSL 3 BASIC

Gene ZNF540, Length 564 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ZNF540-204	ENST00000586792	CFAP45	Q9UL16	551 aa		4.99	□□□□□ -1.61
ZNF540-204	ENST00000586792	MTMR6	Q9Y217	621 aa		4.99	□□□□□ -1.61
ZNF540-204	ENST00000586792	SSX2IP	Q9Y2D8	614 aa		4.99	□□□□□ -1.61
ZNF540-204	ENST00000586792	ATP6V1D	Q9Y5K8	247 aa		4.99	□□□□□ -1.61
ZNF540-204	ENST00000586792	SRPRB	Q9Y5M8	271 aa	Known RBP	4.99	□□□□□ -1.61
ZNF540-204	ENST00000586792	CLIC4	Q9Y696	253 aa		4.99	□□□□□ -1.61
ZNF540-204	ENST00000586792	ZMYM2	Q9UBW7	1377 aa		4.99	□□□□□ -1.61
ZNF540-204	ENST00000586792	TDRD15	B5MCY1	1934 aa	Known RBP	4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	ARL5C	A6NH57	179 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	NT5C1B-RDH14	C9J2C7	533 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792		H3BQ06	376 aa	Predicted RBP	4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	HNRNPDL	O14979	420 aa	Known RBP	4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	SPTLC2	O15270	562 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	SLC16A4	O15374	487 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	CLDN3	O15551	220 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	TLR5	O60602	858 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	PPP6R2	O75170	966 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	TADA2A	O75478	443 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	OFD1	O75665	1012 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	BAG2	O95816	211 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	TH	P07101	528 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	IDE	P14735	1019 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	XPA	P23025	273 aa	Predicted RBP	4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	AKAP5	P24588	427 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	PTX3	P26022	381 aa	Predicted RBP	4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	HOXA11	P31270	313 aa	Predicted RBP	4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	PTGER1	P34995	402 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	KRT20	P35900	424 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	SSR1	P43307	286 aa	Known RBP	4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	NPTX2	P47972	431 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	ME1	P48163	572 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	LIG4	P49917	911 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	SLC12A3	P55017	1021 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	CREM	Q03060	361 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	BTK	Q06187	659 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	HYAL1	Q12794	435 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	MTA1	Q13330	715 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	PSMD6	Q15008	389 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	SLC39A14	Q15043	492 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	FAM187B	Q17R55	369 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	TMEM119	Q4V9L6	283 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	KLHL22	Q53GT1	634 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	INTS11	Q5TA45	600 aa	Known RBP	4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	AGAP9	Q5VTM2	703 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	SPATA1	Q5VX52	437 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	ATL3	Q6DD88	541 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	ISM2	Q6H9L7	571 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	FAM173B	Q6P4H8	233 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	CRELD2	Q6UXH1	353 aa	Predicted RBP	4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	LHFPL2	Q6ZUX7	228 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	STXBP4	Q6ZWJ1	553 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	MRPL10	Q7Z7H8	261 aa	Known RBP	4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	VPS52	Q8N1B4	723 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	SLC39A11	Q8N1S5	342 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	CDYL2	Q8N8U2	506 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	CHST14	Q8NCH0	376 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	PDPR	Q8NCN5	879 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	ZFP28	Q8NHY6	868 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	SPPL3	Q8TCT6	385 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	KCNG4	Q8TDN1	519 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	ACTRT2	Q8TDY3	377 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	RAD54L	Q92698	747 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	TFAP2C	Q92754	450 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	HDAC2	Q92769	488 aa	Known RBP	4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	CASP10	Q92851	521 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	FUBP1	Q96AE4	644 aa	Known RBP	4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	TBC1D20	Q96BZ9	403 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	IGSF21	Q96ID5	467 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	USP28	Q96RU2	1077 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	GAD1	Q99259	594 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	REEP2	Q9BRK0	252 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	PYM1	Q9BRP8	204 aa	Known RBP	4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	MMTAG2	Q9BU76	263 aa	Known RBP	4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	COLEC11	Q9BWP8	271 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	EIF2A	Q9BY44	585 aa	Known RBP	4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	XPO4	Q9C0E2	1151 aa	Known RBP	4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	CCSER1	Q9C0I3	900 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	FZD8	Q9H461	694 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	PDZD7	Q9H5P4	517 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	MRPL17	Q9NRX2	175 aa	Known RBP	4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	SLC38A7	Q9NVC3	462 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	DPP7	Q9UHL4	492 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	MAFF	Q9ULX9	164 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	APOBEC2	Q9Y235	224 aa	Known RBP	4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	LRCH1	Q9Y2L9	728 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	GDA	Q9Y2T3	454 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	PRG3	Q9Y2Y8	225 aa	Predicted RBP	4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	HES2	Q9Y543	173 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	MAGED1	Q9Y5V3	778 aa	Predicted RBP	4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	SNX5	Q9Y5X3	404 aa		4.98	□□□□□ -1.61
ZNF540-204	ENST00000586792	SF3B1	O75533	1304 aa	Known RBP eCLIP	4.97	□□□□□ -1.61
ZNF540-204	ENST00000586792	MYH11	P35749	1972 aa		4.97	□□□□□ -1.61
ZNF540-204	ENST00000586792	TRIM64C	A6NLI5	447 aa		4.97	□□□□□ -1.61
ZNF540-204	ENST00000586792	TRIM38	O00635	465 aa		4.97	□□□□□ -1.61
ZNF540-204	ENST00000586792	XPOT	O43592	962 aa	Known RBP	4.97	□□□□□ -1.61
ZNF540-204	ENST00000586792	TRAPPC3	O43617	180 aa		4.97	□□□□□ -1.61
ZNF540-204	ENST00000586792	TOM1L1	O75674	476 aa		4.97	□□□□□ -1.61
ZNF540-204	ENST00000586792	YEATS4	O95619	227 aa		4.97	□□□□□ -1.61
ZNF540-204	ENST00000586792	CXCL14	O95715	111 aa		4.97	□□□□□ -1.61
ZNF540-204	ENST00000586792	GALT	P07902	379 aa		4.97	□□□□□ -1.61

Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms