RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 LZTS1Q9Y250 596 aa14.37□□□□□ -0.11
LIG3-205ENST00000585941 TYW5A2RUC4 315 aaKnown RBP14.36□□□□□ -0.11
LIG3-205ENST00000585941 SIN3BO75182 1162 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 MMP2P08253 660 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 HLA-DPA1P20036 260 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 HOXD9P28356 352 aaPredicted RBP14.36□□□□□ -0.11
LIG3-205ENST00000585941 MAGEA12P43365 314 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 RPS24P62847 133 aaKnown RBP14.36□□□□□ -0.11
LIG3-205ENST00000585941 SMAD3P84022 425 aaKnown RBP14.36□□□□□ -0.11
LIG3-205ENST00000585941 DSC2Q02487 901 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 FPGSQ05932 587 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 PCSK7Q16549 785 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 PSRC1Q6PGN9 363 aaPredicted RBP14.36□□□□□ -0.11
LIG3-205ENST00000585941 CDHR3Q6ZTQ4 885 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 RTL10Q7L3V2 364 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 TRPM8Q7Z2W7 1104 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 LCA5Q86VQ0 697 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 CCDC63Q8NA47 563 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 CALML6Q8TD86 181 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 PSKH2Q96QS6 385 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 FAM167BQ9BTA0 163 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 EMILIN2Q9BXX0 1053 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 IL21Q9HBE4 155 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 IARS2Q9NSE4 1012 aaKnown RBP14.36□□□□□ -0.11
LIG3-205ENST00000585941 TREX1Q9NSU2 369 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 UBA2Q9UBT2 640 aaPredicted RBP14.36□□□□□ -0.11
LIG3-205ENST00000585941 ZNF510Q9Y2H8 683 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 IRAK3Q9Y616 596 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 LOC285095A0A1B0GVY8 99 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 WDR91A4D1P6 747 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 TGM5O43548 720 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 TGDSO95455 350 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 CXCL14O95715 111 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 FGF1P05230 155 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 SERPINF2P08697 491 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 IRF1P10914 325 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 HDCP19113 662 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 DNAJB1P25685 340 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 ALDH3A1P30838 453 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 MAXP61244 160 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 THOC5Q13769 683 aaKnown RBP14.36□□□□□ -0.11
LIG3-205ENST00000585941 PDE1CQ14123 709 aaPredicted RBP14.36□□□□□ -0.11
LIG3-205ENST00000585941 FSTL4Q6MZW2 842 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 CGB2Q6NT52 195 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 LILRA6Q6PI73 481 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 KIAA0408Q6ZU52 694 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 C16orf59Q7L2K0 433 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 PGBD5Q8N414 524 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 DCLK2Q8N568 766 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 DNAJC5GQ8N7S2 189 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 HJURPQ8NCD3 748 aaPredicted RBP14.36□□□□□ -0.11
LIG3-205ENST00000585941 SPOCK2Q92563 424 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 PEX13Q92968 403 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 IFT43Q96FT9 208 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 ZFRQ96KR1 1074 aaKnown RBP14.36□□□□□ -0.11
LIG3-205ENST00000585941 GCNAQ96QF7 691 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 AGAP2Q99490 1192 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 RAD9AQ99638 391 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 SEMA3CQ99985 751 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 MGME1Q9BQP7 344 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 MCMBPQ9BTE3 642 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 TSSK1BQ9BXA7 367 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 ACE2Q9BYF1 805 aaPredicted RBP14.36□□□□□ -0.11
LIG3-205ENST00000585941 RHOJQ9H4E5 214 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 ZNF334Q9HCZ1 680 aaPredicted RBP14.36□□□□□ -0.11
LIG3-205ENST00000585941 SLCO1B3Q9NPD5 702 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 SIRPGQ9P1W8 387 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 SLC17A6Q9P2U8 582 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 LSM7Q9UK45 103 aaKnown RBP14.36□□□□□ -0.11
LIG3-205ENST00000585941 USH1CQ9Y6N9 552 aa14.36□□□□□ -0.11
LIG3-205ENST00000585941 MYLKQ15746 1914 aa14.35□□□□□ -0.11
LIG3-205ENST00000585941 A0A0D9SEW6 157 aa14.35□□□□□ -0.11
LIG3-205ENST00000585941 LINC00271P0C7V0 271 aa14.35□□□□□ -0.11
LIG3-205ENST00000585941 CDC25CP30307 473 aa14.35□□□□□ -0.11
LIG3-205ENST00000585941 CA8P35219 290 aa14.35□□□□□ -0.11
LIG3-205ENST00000585941 ARCN1P48444 511 aaKnown RBP14.35□□□□□ -0.11
LIG3-205ENST00000585941 LBX1P52954 281 aa14.35□□□□□ -0.11
LIG3-205ENST00000585941 SEPT6Q14141 434 aa14.35□□□□□ -0.11
LIG3-205ENST00000585941 CCDC153Q494R4 210 aa14.35□□□□□ -0.11
LIG3-205ENST00000585941 OTOAQ7RTW8 1153 aa14.35□□□□□ -0.11
LIG3-205ENST00000585941 TMC7Q7Z402 723 aa14.35□□□□□ -0.11
LIG3-205ENST00000585941 NUDCD3Q8IVD9 361 aa14.35□□□□□ -0.11
LIG3-205ENST00000585941 LMNTD2Q8IXW0 634 aa14.35□□□□□ -0.11
LIG3-205ENST00000585941 KLHL23Q8NBE8 558 aa14.35□□□□□ -0.11
LIG3-205ENST00000585941 ARMC2Q8NEN0 867 aa14.35□□□□□ -0.11
LIG3-205ENST00000585941 OR7D4Q8NG98 312 aa14.35□□□□□ -0.11
LIG3-205ENST00000585941 PHOSPHO2Q8TCD6 241 aa14.35□□□□□ -0.11
LIG3-205ENST00000585941 SP7Q8TDD2 431 aaPredicted RBP14.35□□□□□ -0.11
LIG3-205ENST00000585941 SPON2Q9BUD6 331 aa14.35□□□□□ -0.11
LIG3-205ENST00000585941 CINPQ9BW66 212 aaPredicted RBP14.35□□□□□ -0.11
LIG3-205ENST00000585941 ZMYND15Q9H091 742 aa14.35□□□□□ -0.11
LIG3-205ENST00000585941 C12orf65Q9H3J6 166 aaKnown RBP14.35□□□□□ -0.11
LIG3-205ENST00000585941 TRPC7Q9HCX4 862 aa14.35□□□□□ -0.11
LIG3-205ENST00000585941 SNX15Q9NRS6 342 aa14.35□□□□□ -0.11
LIG3-205ENST00000585941 IL1RAPL1Q9NZN1 696 aa14.35□□□□□ -0.11
LIG3-205ENST00000585941 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.34□□□□□ -0.11
LIG3-205ENST00000585941 MYO1CO00159 1063 aa14.34□□□□□ -0.11
LIG3-205ENST00000585941 VAPBO95292 243 aa14.34□□□□□ -0.11
LIG3-205ENST00000585941 BPGMP07738 259 aa14.34□□□□□ -0.11
LIG3-205ENST00000585941 GABRR2P28476 465 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms