RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	LCP1	P13796	627 aa		11.78	□□□□□ -0.52
CDK5RAP3-231	ENST00000584063	DARS	P14868	501 aa	Known RBP	11.78	□□□□□ -0.52
CDK5RAP3-231	ENST00000584063	LMO2	P25791	158 aa		11.78	□□□□□ -0.52
CDK5RAP3-231	ENST00000584063	SP3	Q02447	781 aa		11.78	□□□□□ -0.52
CDK5RAP3-231	ENST00000584063	RALGDS	Q12967	914 aa		11.78	□□□□□ -0.52
CDK5RAP3-231	ENST00000584063	SNX17	Q15036	470 aa		11.78	□□□□□ -0.52
CDK5RAP3-231	ENST00000584063	NOTUM	Q6P988	496 aa		11.78	□□□□□ -0.52
CDK5RAP3-231	ENST00000584063	TNS4	Q8IZW8	715 aa		11.78	□□□□□ -0.52
CDK5RAP3-231	ENST00000584063	RNF148	Q8N7C7	305 aa		11.78	□□□□□ -0.52
CDK5RAP3-231	ENST00000584063	TTC13	Q8NBP0	860 aa		11.78	□□□□□ -0.52
CDK5RAP3-231	ENST00000584063	AZIN2	Q96A70	460 aa		11.78	□□□□□ -0.52
CDK5RAP3-231	ENST00000584063	DHX35	Q9H5Z1	703 aa	Known RBP	11.78	□□□□□ -0.52
CDK5RAP3-231	ENST00000584063	DSE	Q9UL01	958 aa		11.78	□□□□□ -0.52
CDK5RAP3-231	ENST00000584063	LRCH1	Q9Y2L9	728 aa		11.78	□□□□□ -0.52
CDK5RAP3-231	ENST00000584063	BPTF	Q12830	3046 aa		11.77	□□□□□ -0.52
CDK5RAP3-231	ENST00000584063	COL1A2	P08123	1366 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	SPECC1L-ADORA2A	F8WAN1	911 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	KRT37	O76014	449 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	IL18RAP	O95256	599 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	SAT1	P21673	171 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	VARS	P26640	1264 aa	Known RBP	11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	TM4SF4	P48230	202 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	BLVRA	P53004	296 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	SLC18A2	Q05940	514 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	RASIP1	Q5U651	963 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	FAM219B	Q5XKK7	198 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	SLC27A1	Q6PCB7	646 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	ZNF410	Q86VK4	478 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	ZNF354C	Q86Y25	554 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	GALNT13	Q8IUC8	556 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	CRLF3	Q8IUI8	442 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	ADGRF2	Q8IZF7	708 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	CCDC185	Q8N715	623 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	ARRDC4	Q8NCT1	418 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	ADAM32	Q8TC27	787 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	DPF3	Q92784	378 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	INTS12	Q96CB8	462 aa	Known RBP	11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	ZNF184	Q99676	751 aa	Predicted RBP	11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	WNT5B	Q9H1J7	359 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	ASNSD1	Q9NWL6	643 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	STX18	Q9P2W9	335 aa	Known RBP	11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	C17orf113	A0A1B0GUU1	675 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	RECQL4	O94761	1208 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	PROC	P04070	461 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	ASGR1	P07306	291 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	CAPN3	P20807	821 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	RAD52	P43351	418 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	GABRB2	P47870	512 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	NOG	Q13253	232 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	STX3	Q13277	289 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	SOWAHA	Q2M3V2	549 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	FASTKD1	Q53R41	847 aa	Known RBP	11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	MAMDC2	Q7Z304	686 aa	Predicted RBP	11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	CD99L2	Q8TCZ2	262 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	ZFP42	Q96MM3	310 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	ZNF778	Q96MU6	729 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	CATSPER2	Q96P56	530 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	LGMN	Q99538	433 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	CNPY3	Q9BT09	278 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	NFKBIZ	Q9BYH8	718 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	FAM50B	Q9Y247	325 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	CFL2	Q9Y281	166 aa		11.77	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	GOLGA8Q	A0A0J9YX86	632 aa		11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	MYOCOS	A0A1B0GUC4	107 aa		11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	GOLGA8O	A6NCC3	632 aa		11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	MEIS3P2	A8K0S8	358 aa		11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	GOLGA8N	F8WBI6	632 aa		11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063		M0QZ92	97 aa		11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	RNASEH1	O60930	286 aa	Known RBP	11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	DUSP11	O75319	330 aa	Known RBP	11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	CIB2	O75838	187 aa		11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	IDO1	P14902	403 aa		11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	KCNA10	Q16322	511 aa		11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	CMC1	Q7Z7K0	106 aa		11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	STKLD1	Q8NE28	680 aa		11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	OR6B3	Q8NGW1	331 aa		11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	CNDP2	Q96KP4	475 aa	Known RBP	11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	GBP5	Q96PP8	586 aa		11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	VCX	Q9H320	206 aa		11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	RSAD1	Q9HA92	442 aa		11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	LOC105371267	A0A1B0GV96	52 aa		11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	SMIM35	A0A1B0GVV1	85 aa		11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	OPHN1	O60890	802 aa		11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	LMNA	P02545	664 aa	Known RBP	11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	HOXD8	P13378	290 aa	Predicted RBP	11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	ARRB2	P32121	409 aa		11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	SERPINB6	P35237	376 aa		11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	THPO	P40225	353 aa		11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	CCR10	P46092	362 aa		11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	PLOD1	Q02809	727 aa	Predicted RBP	11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	N4BP2L1	Q5TBK1	243 aa	Predicted RBP	11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	GDF6	Q6KF10	455 aa	Predicted RBP	11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	RNF111	Q6ZNA4	994 aa		11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	HPS6	Q86YV9	775 aa		11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	HID1	Q8IV36	788 aa		11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	RAET1E	Q8TD07	263 aa		11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	WNT8B	Q93098	351 aa		11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	CCDC106	Q9BWC9	280 aa		11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	NT5C1A	Q9BXI3	368 aa		11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	ATP13A3	Q9H7F0	1226 aa		11.76	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms