RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 SERPINC1P01008 464 aa3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 CLEC3BP05452 202 aa3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 FCGR2AP12318 317 aa3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 EPHA8P29322 1005 aaPredicted RBP3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 EIF3BP55884 814 aaKnown RBP3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 RPS13P62277 151 aaKnown RBP3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 YPEL5P62699 121 aa3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 EFNB1P98172 346 aa3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 SLC9C1Q4G0N8 1177 aa3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 KIAA1755Q5JYT7 1200 aa3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 TTC39AQ5SRH9 613 aa3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 MEX3CQ5U5Q3 659 aaKnown RBP3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 MIS18BP1Q6P0N0 1132 aa3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 IL20RBQ6UXL0 311 aa3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 NEK10Q6ZWH5 1172 aa3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 FAM57BQ71RH2 274 aa3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 CHD1LQ86WJ1 897 aa3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 DIS3L2Q8IYB7 885 aaKnown RBP3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 FAM185AQ8N0U4 392 aa3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 CPXM2Q8N436 756 aa3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 SETD9Q8NE22 299 aa3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 DNAAF1Q8NEP3 725 aa3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 ETNPPLQ8TBG4 499 aa3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 HDAC7Q8WUI4 952 aa3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 FAR1Q8WVX9 515 aa3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 KLHL29Q96CT2 875 aa3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 NR1H4Q96RI1 486 aaPredicted RBP3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 CLSTN3Q9BQT9 956 aa3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 SLC25A18Q9H1K4 315 aa3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 ACTR5Q9H9F9 607 aaPredicted RBP3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 PAPOLBQ9NRJ5 636 aaKnown RBP3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 KRT84Q9NSB2 600 aa3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 BLOC1S4Q9NUP1 217 aa3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 GRHL1Q9NZI5 618 aa3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 TBC1D14Q9P2M4 693 aa3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 WDR17Q8IZU2 1322 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 KDM3AQ9Y4C1 1321 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 TEX13CA0A0J9YWL9 993 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 TCRBV7S3A2A0A539 114 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 ARHGAP10A1A4S6 786 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 CXorf65A6NEN9 183 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 C2CD4BA6NLJ0 364 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 PRPF4O43172 522 aaKnown RBP eCLIP3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 TNFSF14O43557 240 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 CEP104O60308 925 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 SEC14L2O76054 403 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 DDAH2O95865 285 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 ADAP00813 363 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 IL1AP01583 271 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 URODP06132 367 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 HSP90AA1P07900 732 aaKnown RBP3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 BDNFP23560 247 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 YWHAQP27348 245 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 BSGP35613 385 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 RARSP54136 660 aaKnown RBP3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 ARF3P61204 181 aaPredicted RBP3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 UFM1P61960 85 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 YWHAZP63104 245 aaKnown RBP3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 ARF1P84077 181 aaKnown RBP3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 GHRHRQ02643 423 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 CFHR1Q03591 330 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 ZBTB16Q05516 673 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 PRKG2Q13237 762 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 TDGQ13569 410 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 KRT32Q14532 448 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 RPE65Q16518 533 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 ALG10Q5BKT4 473 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 ALG10BQ5I7T1 473 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 CCDC30Q5VVM6 783 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 TTLL5Q6EMB2 1281 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 TMEM81Q6P7N7 255 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 C17orf99Q6UX52 265 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 CCDC105Q8IYK2 499 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 ADGRF4Q8IZF3 695 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 ARL14EPQ8N8R7 260 aaPredicted RBP3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 ZMIZ2Q8NF64 920 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 C16orf52Q8NHV5 167 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 METTL6Q8TCB7 284 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 CUL5Q93034 780 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 TUBB6Q9BUF5 446 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 MOV10Q9HCE1 1003 aaKnown RBP3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 DIAPH3Q9NSV4 1193 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 ATP8A2Q9NTI2 1148 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 RNF146Q9NTX7 359 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 HDAC6Q9UBN7 1215 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 FBXO4Q9UKT5 387 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 CAMK2AQ9UQM7 478 aa3.98□□□□□ -1.77
SMCHD1-209ENST00000583441 PI4KAP2A4QPH2 592 aa3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 RNMTO43148 476 aaKnown RBP3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 USO1O60763 962 aaKnown RBP3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 CBX6O95503 412 aa3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 UBL4AP11441 157 aa3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 ARL3P36405 182 aa3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 POLD2P49005 469 aa3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 CTCFP49711 727 aaPredicted RBP3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 CLCNKBP51801 687 aa3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 RPL7AP62424 266 aaKnown RBP3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 NEXNQ0ZGT2 675 aa3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 STIM1Q13586 685 aa3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 EIF4A2Q14240 407 aaKnown RBP3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms