RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 C4orf33Q8N1A6 199 aa9.43□□□□□ -0.9
SS18-220ENST00000582092 CFAP52Q8N1V2 620 aa9.43□□□□□ -0.9
SS18-220ENST00000582092 MPP5Q8N3R9 675 aa9.43□□□□□ -0.9
SS18-220ENST00000582092 PAF1Q8N7H5 531 aa9.43□□□□□ -0.9
SS18-220ENST00000582092 GDAP1Q8TB36 358 aa9.43□□□□□ -0.9
SS18-220ENST00000582092 DCAKDQ8WVC6 231 aa9.43□□□□□ -0.9
SS18-220ENST00000582092 MAML1Q92585 1016 aa9.43□□□□□ -0.9
SS18-220ENST00000582092 EDAQ92838 391 aa9.43□□□□□ -0.9
SS18-220ENST00000582092 FATE1Q969F0 183 aa9.43□□□□□ -0.9
SS18-220ENST00000582092 TMA16Q96EY4 203 aaKnown RBP9.43□□□□□ -0.9
SS18-220ENST00000582092 TSNARE1Q96NA8 513 aa9.43□□□□□ -0.9
SS18-220ENST00000582092 ZNF599Q96NL3 588 aa9.43□□□□□ -0.9
SS18-220ENST00000582092 CCT8L2Q96SF2 557 aa9.43□□□□□ -0.9
SS18-220ENST00000582092 APOL2Q9BQE5 337 aa9.43□□□□□ -0.9
SS18-220ENST00000582092 LRFN3Q9BTN0 628 aa9.43□□□□□ -0.9
SS18-220ENST00000582092 CINPQ9BW66 212 aaPredicted RBP9.43□□□□□ -0.9
SS18-220ENST00000582092 KLF16Q9BXK1 252 aaPredicted RBP9.43□□□□□ -0.9
SS18-220ENST00000582092 SSU72Q9NP77 194 aaKnown RBP9.43□□□□□ -0.9
SS18-220ENST00000582092 ASAH2Q9NR71 780 aa9.43□□□□□ -0.9
SS18-220ENST00000582092 VPS45Q9NRW7 570 aa9.43□□□□□ -0.9
SS18-220ENST00000582092 GKN1Q9NS71 199 aa9.43□□□□□ -0.9
SS18-220ENST00000582092 PIH1D1Q9NWS0 290 aaKnown RBP9.43□□□□□ -0.9
SS18-220ENST00000582092 SMPD4Q9NXE4 827 aa9.43□□□□□ -0.9
SS18-220ENST00000582092 SORCS3Q9UPU3 1222 aa9.43□□□□□ -0.9
SS18-220ENST00000582092 FAM237BA0A1B0GVD1 139 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 A0A1B0GVM2 712 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 ILVBLA1L0T0 632 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 C2orf78A6NCI8 922 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 TCAF2A6NFQ2 919 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 C2CD4DB7Z1M9 353 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 TRIM49D1C9J1S8 452 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 COPEO14579 308 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 TM9SF1O15321 606 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 PRPF4O43172 522 aaKnown RBP eCLIP9.42□□□□□ -0.9
SS18-220ENST00000582092 FAM107AO95990 144 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 CYBBP04839 570 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 HLA-DQB2P05538 268 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 C8AP07357 584 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 PTPN2P17706 415 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 TPH1P17752 444 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 PFKLP17858 780 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 COL9A1P20849 921 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 CES1P23141 567 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 SPRP35270 261 aaPredicted RBP9.42□□□□□ -0.9
SS18-220ENST00000582092 CD86P42081 329 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 CCT5P48643 541 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 SLC18A1P54219 525 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 CRADDP78560 199 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 ZXDAP98168 799 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 SIGLEC14Q08ET2 396 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 THOC5Q13769 683 aaKnown RBP9.42□□□□□ -0.9
SS18-220ENST00000582092 SEPT6Q14141 434 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 CRYMQ14894 314 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 LRRC14Q15048 493 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 GRTP1Q5TC63 336 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 GKAP1Q5VSY0 366 aaPredicted RBP9.42□□□□□ -0.9
SS18-220ENST00000582092 STEAP4Q687X5 459 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 NADSYN1Q6IA69 706 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 POTEHQ6S545 545 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 SETD3Q86TU7 594 aaPredicted RBP9.42□□□□□ -0.9
SS18-220ENST00000582092 CIR1Q86X95 450 aaPredicted RBP9.42□□□□□ -0.9
SS18-220ENST00000582092 ZNF683Q8IZ20 524 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 CARNMT1Q8N4J0 409 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 ARL14EPQ8N8R7 260 aaPredicted RBP9.42□□□□□ -0.9
SS18-220ENST00000582092 MAB21L3Q8N8X9 362 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 HJURPQ8NCD3 748 aaPredicted RBP9.42□□□□□ -0.9
SS18-220ENST00000582092 LRRC8CQ8TDW0 803 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 PTCD2Q8WV60 388 aaKnown RBP9.42□□□□□ -0.9
SS18-220ENST00000582092 NXPE3Q969Y0 559 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 CPNE1Q99829 537 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 CORO1BQ9BR76 489 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 POLR1EQ9GZS1 481 aaKnown RBP9.42□□□□□ -0.9
SS18-220ENST00000582092 ATP13A1Q9HD20 1204 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 C20orf96Q9NUD7 363 aaPredicted RBP9.42□□□□□ -0.9
SS18-220ENST00000582092 NDFIP2Q9NV92 336 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 UBA2Q9UBT2 640 aaPredicted RBP9.42□□□□□ -0.9
SS18-220ENST00000582092 SEPT3Q9UH03 358 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 AGO1Q9UL18 857 aaKnown RBP9.42□□□□□ -0.9
SS18-220ENST00000582092 ZNF638Q14966 1978 aaKnown RBP9.42□□□□□ -0.9
SS18-220ENST00000582092 SHROOM3Q8TF72 1996 aa9.42□□□□□ -0.9
SS18-220ENST00000582092 NUP205Q92621 2012 aa9.41□□□□□ -0.9
SS18-220ENST00000582092 A0A1W2PPM1 405 aa9.41□□□□□ -0.9
SS18-220ENST00000582092 FAM159BA6NKW6 160 aa9.41□□□□□ -0.9
SS18-220ENST00000582092 GOLGA8RI6L899 631 aa9.41□□□□□ -0.9
SS18-220ENST00000582092 J3KR12 359 aa9.41□□□□□ -0.9
SS18-220ENST00000582092 CCL16O15467 120 aa9.41□□□□□ -0.9
SS18-220ENST00000582092 KDELR3O43731 214 aa9.41□□□□□ -0.9
SS18-220ENST00000582092 PRAMEF11O60813 436 aa9.41□□□□□ -0.9
SS18-220ENST00000582092 TBL1XO60907 577 aa9.41□□□□□ -0.9
SS18-220ENST00000582092 RFPL2O75678 378 aa9.41□□□□□ -0.9
SS18-220ENST00000582092 USP1O94782 785 aa9.41□□□□□ -0.9
SS18-220ENST00000582092 OAS1P00973 400 aaKnown RBP9.41□□□□□ -0.9
SS18-220ENST00000582092 F11P03951 625 aa9.41□□□□□ -0.9
SS18-220ENST00000582092 POU2F2P09086 479 aa9.41□□□□□ -0.9
SS18-220ENST00000582092 ADRA1DP25100 572 aa9.41□□□□□ -0.9
SS18-220ENST00000582092 DDX6P26196 483 aaKnown RBP eCLIP9.41□□□□□ -0.9
SS18-220ENST00000582092 GCAP28676 217 aa9.41□□□□□ -0.9
SS18-220ENST00000582092 SEC24CP53992 1094 aa9.41□□□□□ -0.9
SS18-220ENST00000582092 WNT3AP56704 352 aa9.41□□□□□ -0.9
SS18-220ENST00000582092 DNAJC3Q13217 504 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms