RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 ASAP2O43150 1006 aa6.69□□□□□ -1.34
SS18-214ENST00000580003 LDB2O43679 373 aa6.69□□□□□ -1.34
SS18-214ENST00000580003 SLC25A17O43808 307 aa6.69□□□□□ -1.34
SS18-214ENST00000580003 NGFRP08138 427 aa6.69□□□□□ -1.34
SS18-214ENST00000580003 CKMT1AP12532 417 aa6.69□□□□□ -1.34
SS18-214ENST00000580003 GNLYP22749 145 aa6.69□□□□□ -1.34
SS18-214ENST00000580003 CHRNDQ07001 517 aa6.69□□□□□ -1.34
SS18-214ENST00000580003 EDRF1Q3B7T1 1238 aa6.69□□□□□ -1.34
SS18-214ENST00000580003 CYP26C1Q6V0L0 522 aa6.69□□□□□ -1.34
SS18-214ENST00000580003 RBFAQ8N0V3 343 aa6.69□□□□□ -1.34
SS18-214ENST00000580003 TEX45Q8NA69 505 aa6.69□□□□□ -1.34
SS18-214ENST00000580003 ZMIZ2Q8NF64 920 aa6.69□□□□□ -1.34
SS18-214ENST00000580003 RFWD2Q8NHY2 731 aa6.69□□□□□ -1.34
SS18-214ENST00000580003 HERVK_113Q902F9 699 aa6.69□□□□□ -1.34
SS18-214ENST00000580003 ZNF479Q96JC4 524 aa6.69□□□□□ -1.34
SS18-214ENST00000580003 UBXN10Q96LJ8 280 aa6.69□□□□□ -1.34
SS18-214ENST00000580003 LMAN2LQ9H0V9 348 aa6.69□□□□□ -1.34
SS18-214ENST00000580003 EPHX3Q9H6B9 360 aa6.69□□□□□ -1.34
SS18-214ENST00000580003 WNT16Q9UBV4 365 aa6.69□□□□□ -1.34
SS18-214ENST00000580003 ITM2AO43736 263 aa6.68□□□□□ -1.34
SS18-214ENST00000580003 CEP104O60308 925 aa6.68□□□□□ -1.34
SS18-214ENST00000580003 NAGAP17050 411 aa6.68□□□□□ -1.34
SS18-214ENST00000580003 PCYT1AP49585 367 aa6.68□□□□□ -1.34
SS18-214ENST00000580003 EGR4Q05215 589 aa6.68□□□□□ -1.34
SS18-214ENST00000580003 ERV3-1Q14264 604 aa6.68□□□□□ -1.34
SS18-214ENST00000580003 ZNF284Q2VY69 593 aa6.68□□□□□ -1.34
SS18-214ENST00000580003 SLC4A8Q2Y0W8 1093 aa6.68□□□□□ -1.34
SS18-214ENST00000580003 LCE1AQ5T7P2 110 aa6.68□□□□□ -1.34
SS18-214ENST00000580003 PRSS45Q7RTY3 260 aa6.68□□□□□ -1.34
SS18-214ENST00000580003 ADGRG6Q86SQ4 1221 aa6.68□□□□□ -1.34
SS18-214ENST00000580003 CPOQ8IVL8 374 aa6.68□□□□□ -1.34
SS18-214ENST00000580003 CPXM2Q8N436 756 aa6.68□□□□□ -1.34
SS18-214ENST00000580003 MIGA1Q8NAN2 632 aa6.68□□□□□ -1.34
SS18-214ENST00000580003 NOC3LQ8WTT2 800 aaKnown RBP6.68□□□□□ -1.34
SS18-214ENST00000580003 RAI2Q9Y5P3 530 aa6.68□□□□□ -1.34
SS18-214ENST00000580003 C17orf113A0A1B0GUU1 675 aa6.67□□□□□ -1.34
SS18-214ENST00000580003 ARHGAP10A1A4S6 786 aa6.67□□□□□ -1.34
SS18-214ENST00000580003 GUCY1B2O75343 617 aa6.67□□□□□ -1.34
SS18-214ENST00000580003 CTPS1P17812 591 aa6.67□□□□□ -1.34
SS18-214ENST00000580003 PGM1P36871 562 aa6.67□□□□□ -1.34
SS18-214ENST00000580003 THPOP40225 353 aa6.67□□□□□ -1.34
SS18-214ENST00000580003 GPD2P43304 727 aa6.67□□□□□ -1.34
SS18-214ENST00000580003 NUDT6P53370 316 aa6.67□□□□□ -1.34
SS18-214ENST00000580003 SLC18A2Q05940 514 aa6.67□□□□□ -1.34
SS18-214ENST00000580003 KHDRBS1Q07666 443 aaKnown RBP eCLIP6.67□□□□□ -1.34
SS18-214ENST00000580003 CRYZQ08257 329 aaKnown RBP6.67□□□□□ -1.34
SS18-214ENST00000580003 Q0VFX4 171 aa6.67□□□□□ -1.34
SS18-214ENST00000580003 PATL1Q86TB9 770 aaKnown RBP6.67□□□□□ -1.34
SS18-214ENST00000580003 SMC5Q8IY18 1101 aa6.67□□□□□ -1.34
SS18-214ENST00000580003 GDPD5Q8WTR4 605 aa6.67□□□□□ -1.34
SS18-214ENST00000580003 TMEM170AQ8WVE7 144 aa6.67□□□□□ -1.34
SS18-214ENST00000580003 RNF183Q96D59 192 aa6.67□□□□□ -1.34
SS18-214ENST00000580003 CLSTN3Q9BQT9 956 aa6.67□□□□□ -1.34
SS18-214ENST00000580003 SEZ6LQ9BYH1 1024 aa6.67□□□□□ -1.34
SS18-214ENST00000580003 NPFFR1Q9GZQ6 430 aa6.67□□□□□ -1.34
SS18-214ENST00000580003 SLC32A1Q9H598 525 aa6.67□□□□□ -1.34
SS18-214ENST00000580003 MVB12BQ9H7P6 319 aa6.67□□□□□ -1.34
SS18-214ENST00000580003 KDM4EB2RXH2 506 aaPredicted RBP6.66□□□□□ -1.34
SS18-214ENST00000580003 CHL1O00533 1208 aa6.66□□□□□ -1.34
SS18-214ENST00000580003 CENPAP49450 140 aa6.66□□□□□ -1.34
SS18-214ENST00000580003 ABATP80404 500 aa6.66□□□□□ -1.34
SS18-214ENST00000580003 HNF4GQ14541 408 aa6.66□□□□□ -1.34
SS18-214ENST00000580003 KIAA1161Q6NSJ0 714 aa6.66□□□□□ -1.34
SS18-214ENST00000580003 SMAP1Q8IYB5 467 aaPredicted RBP6.66□□□□□ -1.34
SS18-214ENST00000580003 LSM14AQ8ND56 463 aaKnown RBP6.66□□□□□ -1.34
SS18-214ENST00000580003 MCPH1Q8NEM0 835 aa6.66□□□□□ -1.34
SS18-214ENST00000580003 OR14A16Q8NHC5 309 aa6.66□□□□□ -1.34
SS18-214ENST00000580003 ELP5Q8TE02 316 aa6.66□□□□□ -1.34
SS18-214ENST00000580003 NEUROG1Q92886 237 aa6.66□□□□□ -1.34
SS18-214ENST00000580003 SPATS2LQ9NUQ6 558 aaKnown RBP6.66□□□□□ -1.34
SS18-214ENST00000580003 RRN3Q9NYV6 651 aa6.66□□□□□ -1.34
SS18-214ENST00000580003 CNOT7Q9UIV1 285 aaKnown RBP6.66□□□□□ -1.34
SS18-214ENST00000580003 PCDHGB5Q9Y5G0 923 aa6.66□□□□□ -1.34
SS18-214ENST00000580003 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP6.65□□□□□ -1.34
SS18-214ENST00000580003 PRSS2P07478 247 aa6.65□□□□□ -1.34
SS18-214ENST00000580003 ACAA1P09110 424 aaPredicted RBP6.65□□□□□ -1.34
SS18-214ENST00000580003 IFIT1P09914 478 aaKnown RBP6.65□□□□□ -1.34
SS18-214ENST00000580003 CNTFP26441 200 aa6.65□□□□□ -1.34
SS18-214ENST00000580003 PSMC2P35998 433 aaKnown RBP6.65□□□□□ -1.34
SS18-214ENST00000580003 MAPK9P45984 424 aa6.65□□□□□ -1.34
SS18-214ENST00000580003 BLKP51451 505 aa6.65□□□□□ -1.34
SS18-214ENST00000580003 CCR5P51681 352 aa6.65□□□□□ -1.34
SS18-214ENST00000580003 YWHAZP63104 245 aaKnown RBP6.65□□□□□ -1.34
SS18-214ENST00000580003 ZXDBP98169 803 aa6.65□□□□□ -1.34
SS18-214ENST00000580003 LTBQ06643 244 aa6.65□□□□□ -1.34
SS18-214ENST00000580003 TRAF2Q12933 501 aa6.65□□□□□ -1.34
SS18-214ENST00000580003 CAPSQ13938 189 aa6.65□□□□□ -1.34
SS18-214ENST00000580003 NFIL3Q16649 462 aa6.65□□□□□ -1.34
SS18-214ENST00000580003 PLEKHO1Q53GL0 409 aaPredicted RBP6.65□□□□□ -1.34
SS18-214ENST00000580003 DCAF6Q58WW2 860 aa6.65□□□□□ -1.34
SS18-214ENST00000580003 RETSATQ6NUM9 610 aa6.65□□□□□ -1.34
SS18-214ENST00000580003 LRRC8DQ7L1W4 858 aa6.65□□□□□ -1.34
SS18-214ENST00000580003 TNIP2Q8NFZ5 429 aa6.65□□□□□ -1.34
SS18-214ENST00000580003 RUFY2Q8WXA3 655 aa6.65□□□□□ -1.34
SS18-214ENST00000580003 MAELQ96JY0 434 aaKnown RBP6.65□□□□□ -1.34
SS18-214ENST00000580003 EYA3Q99504 573 aa6.65□□□□□ -1.34
SS18-214ENST00000580003 TYW5A2RUC4 315 aaKnown RBP6.64□□□□□ -1.35
SS18-214ENST00000580003 GLUD1P00367 558 aa6.64□□□□□ -1.35
SS18-214ENST00000580003 DCTDP32321 178 aa6.64□□□□□ -1.35
SS18-214ENST00000580003 LIFRP42702 1097 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms