RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 CHRNA3P32297 505 aa16.53■□□□□ 0.24
VPS53-218ENST00000575207 HK3P52790 923 aa16.53■□□□□ 0.24
VPS53-218ENST00000575207 ARHGEF7Q14155 803 aa16.53■□□□□ 0.24
VPS53-218ENST00000575207 ARL6IP4Q66PJ3 421 aaKnown RBP16.53■□□□□ 0.24
VPS53-218ENST00000575207 ANKS6Q68DC2 871 aa16.53■□□□□ 0.24
VPS53-218ENST00000575207 RTP4Q96DX8 246 aa16.53■□□□□ 0.24
VPS53-218ENST00000575207 CCDC74BQ96LY2 380 aa16.53■□□□□ 0.24
VPS53-218ENST00000575207 NUDT22Q9BRQ3 303 aa16.53■□□□□ 0.24
VPS53-218ENST00000575207 SLAMF7Q9NQ25 335 aa16.53■□□□□ 0.24
VPS53-218ENST00000575207 MAP10Q9P2G4 905 aa16.53■□□□□ 0.24
VPS53-218ENST00000575207 PCDHGA9Q9Y5G4 932 aaKnown RBP16.53■□□□□ 0.24
VPS53-218ENST00000575207 STAB1Q9NY15 2570 aa16.53■□□□□ 0.24
VPS53-218ENST00000575207 RNF103O00237 685 aa16.52■□□□□ 0.24
VPS53-218ENST00000575207 F8A1P23610 371 aa16.52■□□□□ 0.24
VPS53-218ENST00000575207 STAT5AP42229 794 aa16.52■□□□□ 0.24
VPS53-218ENST00000575207 TKTL1P51854 596 aa16.52■□□□□ 0.24
VPS53-218ENST00000575207 PER3P56645 1201 aa16.52■□□□□ 0.24
VPS53-218ENST00000575207 INCA1Q0VD86 236 aa16.52■□□□□ 0.24
VPS53-218ENST00000575207 SGCGQ13326 291 aa16.52■□□□□ 0.24
VPS53-218ENST00000575207 NCOA4Q13772 614 aa16.52■□□□□ 0.24
VPS53-218ENST00000575207 EDRF1Q3B7T1 1238 aa16.52■□□□□ 0.24
VPS53-218ENST00000575207 BSPRYQ5W0U4 402 aa16.52■□□□□ 0.24
VPS53-218ENST00000575207 KDELC2Q7Z4H8 507 aa16.52■□□□□ 0.24
VPS53-218ENST00000575207 PIGZQ86VD9 579 aa16.52■□□□□ 0.24
VPS53-218ENST00000575207 NDRG1Q92597 394 aaKnown RBP16.52■□□□□ 0.24
VPS53-218ENST00000575207 EDEM1Q92611 657 aa16.52■□□□□ 0.24
VPS53-218ENST00000575207 DNAJC19Q96DA6 116 aa16.52■□□□□ 0.24
VPS53-218ENST00000575207 C19orf60Q96EN9 201 aa16.52■□□□□ 0.24
VPS53-218ENST00000575207 MRPL40Q9NQ50 206 aaKnown RBP16.52■□□□□ 0.24
VPS53-218ENST00000575207 TMEM184BQ9Y519 407 aaPredicted RBP16.52■□□□□ 0.24
VPS53-218ENST00000575207 FADS3Q9Y5Q0 445 aa16.52■□□□□ 0.24
VPS53-218ENST00000575207 CSPG4Q6UVK1 2322 aa16.52■□□□□ 0.23
VPS53-218ENST00000575207 ACANP16112 2415 aa16.51■□□□□ 0.23
VPS53-218ENST00000575207 TOR1BO14657 336 aa16.51■□□□□ 0.23
VPS53-218ENST00000575207 LRCH4O75427 683 aa16.51■□□□□ 0.23
VPS53-218ENST00000575207 CTSEP14091 401 aa16.51■□□□□ 0.23
VPS53-218ENST00000575207 IDEP14735 1019 aa16.51■□□□□ 0.23
VPS53-218ENST00000575207 CD1EP15812 388 aa16.51■□□□□ 0.23
VPS53-218ENST00000575207 CSTF2P33240 577 aaKnown RBP eCLIP16.51■□□□□ 0.23
VPS53-218ENST00000575207 NUMBP49757 651 aa16.51■□□□□ 0.23
VPS53-218ENST00000575207 LIMK2P53671 638 aa16.51■□□□□ 0.23
VPS53-218ENST00000575207 SEMA5AQ13591 1074 aa16.51■□□□□ 0.23
VPS53-218ENST00000575207 ERV3-1Q14264 604 aa16.51■□□□□ 0.23
VPS53-218ENST00000575207 HLTFQ14527 1009 aaKnown RBP eCLIP16.51■□□□□ 0.23
VPS53-218ENST00000575207 MSANTD2Q6P1R3 559 aa16.51■□□□□ 0.23
VPS53-218ENST00000575207 BMPERQ8N8U9 685 aa16.51■□□□□ 0.23
VPS53-218ENST00000575207 CENPTQ96BT3 561 aa16.51■□□□□ 0.23
VPS53-218ENST00000575207 RANBP9Q96S59 729 aa16.51■□□□□ 0.23
VPS53-218ENST00000575207 NT5C1AQ9BXI3 368 aa16.51■□□□□ 0.23
VPS53-218ENST00000575207 TRIM55Q9BYV6 548 aa16.51■□□□□ 0.23
VPS53-218ENST00000575207 ULBP1Q9BZM6 244 aa16.51■□□□□ 0.23
VPS53-218ENST00000575207 NUCKS1Q9H1E3 243 aaKnown RBP16.51■□□□□ 0.23
VPS53-218ENST00000575207 OCIAD1Q9NX40 245 aa16.51■□□□□ 0.23
VPS53-218ENST00000575207 LUZP4Q9P127 313 aa16.51■□□□□ 0.23
VPS53-218ENST00000575207 FARP1Q9Y4F1 1045 aaPredicted RBP16.51■□□□□ 0.23
VPS53-218ENST00000575207 AP1G1O43747 822 aa16.5■□□□□ 0.23
VPS53-218ENST00000575207 KRT86O43790 486 aa16.5■□□□□ 0.23
VPS53-218ENST00000575207 PDGFRAP16234 1089 aa16.5■□□□□ 0.23
VPS53-218ENST00000575207 EIF4A3P38919 411 aaKnown RBP16.5■□□□□ 0.23
VPS53-218ENST00000575207 ASPAP45381 313 aa16.5■□□□□ 0.23
VPS53-218ENST00000575207 C14orf28Q4W4Y0 310 aa16.5■□□□□ 0.23
VPS53-218ENST00000575207 NRSN1Q8IZ57 195 aa16.5■□□□□ 0.23
VPS53-218ENST00000575207 OR2A12Q8NGT7 310 aa16.5■□□□□ 0.23
VPS53-218ENST00000575207 SNRNP40Q96DI7 357 aaKnown RBP16.5■□□□□ 0.23
VPS53-218ENST00000575207 TMUB1Q9BVT8 246 aa16.5■□□□□ 0.23
VPS53-218ENST00000575207 ABCC13Q9NSE7 274 aa16.5■□□□□ 0.23
VPS53-218ENST00000575207 SLC25A13Q9UJS0 675 aa16.5■□□□□ 0.23
VPS53-218ENST00000575207 IGLON5A6NGN9 336 aa16.49■□□□□ 0.23
VPS53-218ENST00000575207 BNIP3LO60238 219 aa16.49■□□□□ 0.23
VPS53-218ENST00000575207 VNN1O95497 513 aa16.49■□□□□ 0.23
VPS53-218ENST00000575207 PRNPP04156 253 aa16.49■□□□□ 0.23
VPS53-218ENST00000575207 CAPN3P20807 821 aa16.49■□□□□ 0.23
VPS53-218ENST00000575207 NEK3P51956 506 aa16.49■□□□□ 0.23
VPS53-218ENST00000575207 BIRC3Q13489 604 aa16.49■□□□□ 0.23
VPS53-218ENST00000575207 ELOAQ14241 798 aaKnown RBP16.49■□□□□ 0.23
VPS53-218ENST00000575207 SGSM1Q2NKQ1 1148 aa16.49■□□□□ 0.23
VPS53-218ENST00000575207 LINGO4Q6UY18 593 aa16.49■□□□□ 0.23
VPS53-218ENST00000575207 RD3Q7Z3Z2 195 aa16.49■□□□□ 0.23
VPS53-218ENST00000575207 TMEM135Q86UB9 458 aa16.49■□□□□ 0.23
VPS53-218ENST00000575207 SH2D3CQ8N5H7 860 aa16.49■□□□□ 0.23
VPS53-218ENST00000575207 RNF34Q969K3 372 aa16.49■□□□□ 0.23
VPS53-218ENST00000575207 HDAC11Q96DB2 347 aa16.49■□□□□ 0.23
VPS53-218ENST00000575207 ZPBPQ9BS86 351 aa16.49■□□□□ 0.23
VPS53-218ENST00000575207 SLC25A23Q9BV35 468 aa16.49■□□□□ 0.23
VPS53-218ENST00000575207 TRIM8Q9BZR9 551 aa16.49■□□□□ 0.23
VPS53-218ENST00000575207 FOXD4L1Q9NU39 408 aa16.49■□□□□ 0.23
VPS53-218ENST00000575207 RPS6KL1Q9Y6S9 549 aa16.49■□□□□ 0.23
VPS53-218ENST00000575207 MAP1AP78559 2803 aaPredicted RBP16.49■□□□□ 0.23
VPS53-218ENST00000575207 YJEFN3A6XGL0 299 aa16.48■□□□□ 0.23
VPS53-218ENST00000575207 E7ENQ6 273 aa16.48■□□□□ 0.23
VPS53-218ENST00000575207 INPP4BO15327 924 aa16.48■□□□□ 0.23
VPS53-218ENST00000575207 DLGAP3O95886 979 aa16.48■□□□□ 0.23
VPS53-218ENST00000575207 RECKO95980 971 aa16.48■□□□□ 0.23
VPS53-218ENST00000575207 ADRB3P13945 408 aa16.48■□□□□ 0.23
VPS53-218ENST00000575207 CLCN1P35523 988 aa16.48■□□□□ 0.23
VPS53-218ENST00000575207 IGFALSP35858 605 aa16.48■□□□□ 0.23
VPS53-218ENST00000575207 MAP7Q14244 749 aa16.48■□□□□ 0.23
VPS53-218ENST00000575207 TCEA2Q15560 299 aa16.48■□□□□ 0.23
VPS53-218ENST00000575207 AMZ1Q400G9 498 aa16.48■□□□□ 0.23
VPS53-218ENST00000575207 HID1Q8IV36 788 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms