RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 ZNF548Q8NEK5 533 aaPredicted RBP21.44■■□□□ 1.02
VPS53-216ENST00000574029 EPS8L1Q8TE68 723 aa21.44■■□□□ 1.02
VPS53-216ENST00000574029 ASB12Q8WXK4 309 aa21.44■■□□□ 1.02
VPS53-216ENST00000574029 RAB7BQ96AH8 199 aa21.44■■□□□ 1.02
VPS53-216ENST00000574029 VOPP1Q96AW1 172 aa21.44■■□□□ 1.02
VPS53-216ENST00000574029 HIC2Q96JB3 615 aa21.44■■□□□ 1.02
VPS53-216ENST00000574029 STK33Q9BYT3 514 aa21.44■■□□□ 1.02
VPS53-216ENST00000574029 RETREG1Q9H6L5 497 aa21.44■■□□□ 1.02
VPS53-216ENST00000574029 ZDHHC6Q9H6R6 413 aa21.44■■□□□ 1.02
VPS53-216ENST00000574029 METTL5Q9NRN9 209 aaKnown RBP21.44■■□□□ 1.02
VPS53-216ENST00000574029 C16orf96A6NNT2 1141 aa21.43■■□□□ 1.02
VPS53-216ENST00000574029 F8VZ95 297 aa21.43■■□□□ 1.02
VPS53-216ENST00000574029 H3BM21 787 aa21.43■■□□□ 1.02
VPS53-216ENST00000574029 TSPAN6O43657 245 aa21.43■■□□□ 1.02
VPS53-216ENST00000574029 CSO75390 466 aaKnown RBP21.43■■□□□ 1.02
VPS53-216ENST00000574029 MPOP05164 745 aa21.43■■□□□ 1.02
VPS53-216ENST00000574029 ACVRL1P37023 503 aa21.43■■□□□ 1.02
VPS53-216ENST00000574029 ETFBP38117 255 aa21.43■■□□□ 1.02
VPS53-216ENST00000574029 ABL2P42684 1182 aa21.43■■□□□ 1.02
VPS53-216ENST00000574029 PCBP4P57723 403 aaKnown RBP21.43■■□□□ 1.02
VPS53-216ENST00000574029 ATP11AP98196 1134 aa21.43■■□□□ 1.02
VPS53-216ENST00000574029 SGCGQ13326 291 aa21.43■■□□□ 1.02
VPS53-216ENST00000574029 DPCR1Q3MIW9 517 aa21.43■■□□□ 1.02
VPS53-216ENST00000574029 RAB6CQ53S08 254 aa21.43■■□□□ 1.02
VPS53-216ENST00000574029 HSP90AA4PQ58FG1 418 aa21.43■■□□□ 1.02
VPS53-216ENST00000574029 NAA35Q5VZE5 725 aa21.43■■□□□ 1.02
VPS53-216ENST00000574029 ZCCHC8Q6NZY4 707 aaKnown RBP21.43■■□□□ 1.02
VPS53-216ENST00000574029 NLRP14Q86W24 1093 aa21.43■■□□□ 1.02
VPS53-216ENST00000574029 EMC1Q8N766 993 aa21.43■■□□□ 1.02
VPS53-216ENST00000574029 IFI44Q8TCB0 444 aa21.43■■□□□ 1.02
VPS53-216ENST00000574029 ARHGEF2Q92974 986 aaKnown RBP21.43■■□□□ 1.02
VPS53-216ENST00000574029 TM6SF2Q9BZW4 377 aa21.43■■□□□ 1.02
VPS53-216ENST00000574029 RAB6CQ9H0N0 254 aa21.43■■□□□ 1.02
VPS53-216ENST00000574029 NDFIP2Q9NV92 336 aa21.43■■□□□ 1.02
VPS53-216ENST00000574029 OR12D3Q9UGF7 316 aa21.43■■□□□ 1.02
VPS53-216ENST00000574029 KLF15Q9UIH9 416 aa21.43■■□□□ 1.02
VPS53-216ENST00000574029 IGLON5A6NGN9 336 aa21.42■■□□□ 1.02
VPS53-216ENST00000574029 FPGTO14772 594 aa21.42■■□□□ 1.02
VPS53-216ENST00000574029 USP12O75317 370 aa21.42■■□□□ 1.02
VPS53-216ENST00000574029 RHOQP17081 205 aa21.42■■□□□ 1.02
VPS53-216ENST00000574029 GKP32189 559 aa21.42■■□□□ 1.02
VPS53-216ENST00000574029 ADRA1BP35368 520 aa21.42■■□□□ 1.02
VPS53-216ENST00000574029 LSSP48449 732 aa21.42■■□□□ 1.02
VPS53-216ENST00000574029 MAPKAPK2P49137 400 aa21.42■■□□□ 1.02
VPS53-216ENST00000574029 GABREP78334 506 aa21.42■■□□□ 1.02
VPS53-216ENST00000574029 PDE1CQ14123 709 aaPredicted RBP21.42■■□□□ 1.02
VPS53-216ENST00000574029 ZNF805Q5CZA5 627 aa21.42■■□□□ 1.02
VPS53-216ENST00000574029 TPRG1LQ5T0D9 272 aa21.42■■□□□ 1.02
VPS53-216ENST00000574029 MAPK15Q8TD08 544 aa21.42■■□□□ 1.02
VPS53-216ENST00000574029 LGMNQ99538 433 aa21.42■■□□□ 1.02
VPS53-216ENST00000574029 ABCG4Q9H172 646 aa21.42■■□□□ 1.02
VPS53-216ENST00000574029 OSBPL2Q9H1P3 480 aa21.42■■□□□ 1.02
VPS53-216ENST00000574029 TMEM248Q9NWD8 314 aa21.42■■□□□ 1.02
VPS53-216ENST00000574029 IPO11Q9UI26 975 aaKnown RBP21.42■■□□□ 1.02
VPS53-216ENST00000574029 SALL4Q9UJQ4 1053 aa21.42■■□□□ 1.02
VPS53-216ENST00000574029 NOCTQ9UK39 431 aaKnown RBP21.42■■□□□ 1.02
VPS53-216ENST00000574029 PTPRQQ9UMZ3 2332 aa21.42■■□□□ 1.02
VPS53-216ENST00000574029 BPTFQ12830 3046 aa21.41■■□□□ 1.02
VPS53-216ENST00000574029 RIOK3O14730 519 aaKnown RBP21.41■■□□□ 1.02
VPS53-216ENST00000574029 SPINT1O43278 529 aa21.41■■□□□ 1.02
VPS53-216ENST00000574029 AQP9O43315 295 aa21.41■■□□□ 1.02
VPS53-216ENST00000574029 GSRP00390 522 aa21.41■■□□□ 1.02
VPS53-216ENST00000574029 CYP1A1P04798 512 aaPredicted RBP21.41■■□□□ 1.02
VPS53-216ENST00000574029 GEMIN4P57678 1058 aaKnown RBP21.41■■□□□ 1.02
VPS53-216ENST00000574029 ERVPABLB-1P60509 514 aa21.41■■□□□ 1.02
VPS53-216ENST00000574029 PFN3P60673 137 aa21.41■■□□□ 1.02
VPS53-216ENST00000574029 CXADRP78310 365 aa21.41■■□□□ 1.02
VPS53-216ENST00000574029 ARL13BQ3SXY8 428 aa21.41■■□□□ 1.02
VPS53-216ENST00000574029 CCDC14Q49A88 953 aa21.41■■□□□ 1.02
VPS53-216ENST00000574029 ZNF677Q86XU0 584 aa21.41■■□□□ 1.02
VPS53-216ENST00000574029 RYBPQ8N488 228 aaPredicted RBP21.41■■□□□ 1.02
VPS53-216ENST00000574029 DENND6BQ8NEG7 585 aa21.41■■□□□ 1.02
VPS53-216ENST00000574029 OR6K2Q8NGY2 324 aa21.41■■□□□ 1.02
VPS53-216ENST00000574029 MAGEH1Q9H213 219 aa21.41■■□□□ 1.02
VPS53-216ENST00000574029 CLSTN2Q9H4D0 955 aa21.41■■□□□ 1.02
VPS53-216ENST00000574029 POLR1BQ9H9Y6 1135 aa21.41■■□□□ 1.02
VPS53-216ENST00000574029 NCKIPSDQ9NZQ3 722 aa21.41■■□□□ 1.02
VPS53-216ENST00000574029 GGT7Q9UJ14 662 aa21.41■■□□□ 1.02
VPS53-216ENST00000574029 NEU3Q9UQ49 428 aa21.41■■□□□ 1.02
VPS53-216ENST00000574029 FAM72CH0Y354 149 aa21.4■■□□□ 1.02
VPS53-216ENST00000574029 PES1O00541 588 aaKnown RBP21.4■■□□□ 1.02
VPS53-216ENST00000574029 TPP1O14773 563 aa21.4■■□□□ 1.02
VPS53-216ENST00000574029 JUNDP17535 347 aa21.4■■□□□ 1.02
VPS53-216ENST00000574029 TGM2P21980 687 aa21.4■■□□□ 1.02
VPS53-216ENST00000574029 MMP8P22894 467 aa21.4■■□□□ 1.02
VPS53-216ENST00000574029 SNRPD1P62314 119 aaKnown RBP21.4■■□□□ 1.02
VPS53-216ENST00000574029 EIF2B5Q13144 721 aaKnown RBP21.4■■□□□ 1.02
VPS53-216ENST00000574029 POLD3Q15054 466 aaPredicted RBP21.4■■□□□ 1.02
VPS53-216ENST00000574029 CDO1Q16878 200 aa21.4■■□□□ 1.02
VPS53-216ENST00000574029 C15orf59Q2T9L4 293 aaPredicted RBP21.4■■□□□ 1.02
VPS53-216ENST00000574029 FAM72AQ5TYM5 149 aa21.4■■□□□ 1.02
VPS53-216ENST00000574029 FAM72DQ6L9T8 149 aa21.4■■□□□ 1.02
VPS53-216ENST00000574029 RWDD4Q6NW29 188 aaKnown RBP21.4■■□□□ 1.02
VPS53-216ENST00000574029 FAM72BQ86X60 149 aa21.4■■□□□ 1.02
VPS53-216ENST00000574029 OR2AP1Q8NGE2 309 aa21.4■■□□□ 1.02
VPS53-216ENST00000574029 SLC20A1Q8WUM9 679 aa21.4■■□□□ 1.02
VPS53-216ENST00000574029 RXFP2Q8WXD0 754 aa21.4■■□□□ 1.02
VPS53-216ENST00000574029 OSBPL1AQ9BXW6 950 aa21.4■■□□□ 1.02
VPS53-216ENST00000574029 SAMSN1Q9NSI8 373 aaKnown RBP21.4■■□□□ 1.02
VPS53-216ENST00000574029 DACH1Q9UI36 760 aa21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms