RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 TULP3O75386 442 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 BANF1O75531 89 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 MT-CO1P00395 513 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 AGTP01019 485 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 SERPINF2P08697 491 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 POLR2EP19388 210 aaKnown RBP13.87□□□□□ -0.19
CCDC40-209ENST00000573474 CR2P20023 1033 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 KCNA5P22460 613 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 GDI1P31150 447 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 ELK3P41970 407 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 NPY2RP49146 381 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 SCNN1BP51168 640 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 RHOAP61586 193 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 ECT2LQ008S8 904 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 HTR4Q13639 388 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 SLC29A2Q14542 456 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 FASTKD3Q14CZ7 662 aaKnown RBP13.87□□□□□ -0.19
CCDC40-209ENST00000573474 SKIV2LQ15477 1246 aaKnown RBP13.87□□□□□ -0.19
CCDC40-209ENST00000573474 GAB4Q2WGN9 574 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 HP1BP3Q5SSJ5 553 aaPredicted RBP13.87□□□□□ -0.19
CCDC40-209ENST00000573474 MBLAC2Q68D91 279 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 LRIG3Q6UXM1 1119 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 ANKMY2Q8IV38 441 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 PALM2Q8IXS6 379 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 DNAAF3Q8N9W5 541 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 ATP11CQ8NB49 1132 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 FBXO36Q8NEA4 188 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 OR52K1Q8NGK4 314 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 MRGPRX2Q96LB1 330 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 SIGLEC10Q96LC7 697 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 C9orf72Q96LT7 481 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 NUDCD1Q96RS6 583 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 FICDQ9BVA6 458 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 FSD1LQ9BXM9 530 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 SCUBE2Q9NQ36 999 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 BFARQ9NZS9 450 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 DEC1Q9P2X7 70 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 LHX3Q9UBR4 397 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 HS3ST2Q9Y278 367 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 FCF1Q9Y324 198 aaKnown RBP13.87□□□□□ -0.19
CCDC40-209ENST00000573474 TEX264Q9Y6I9 313 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 DENND4AQ7Z401 1863 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 DOCK8Q8NF50 2099 aa13.86□□□□□ -0.19
CCDC40-209ENST00000573474 MYO18AQ92614 2054 aaKnown RBP13.86□□□□□ -0.19
CCDC40-209ENST00000573474 TTC24A2A3L6 582 aaPredicted RBP13.86□□□□□ -0.19
CCDC40-209ENST00000573474 OTOL1A6NHN0 477 aaPredicted RBP13.86□□□□□ -0.19
CCDC40-209ENST00000573474 K7ERQ8 282 aa13.86□□□□□ -0.19
CCDC40-209ENST00000573474 TRIM24O15164 1050 aa13.86□□□□□ -0.19
CCDC40-209ENST00000573474 MBTPS2O43462 519 aa13.86□□□□□ -0.19
CCDC40-209ENST00000573474 SMAD6O43541 496 aaKnown RBP13.86□□□□□ -0.19
CCDC40-209ENST00000573474 USP12O75317 370 aa13.86□□□□□ -0.19
CCDC40-209ENST00000573474 ACSL3O95573 720 aa13.86□□□□□ -0.19
CCDC40-209ENST00000573474 CPP00450 1065 aa13.86□□□□□ -0.19
CCDC40-209ENST00000573474 ASLP04424 464 aa13.86□□□□□ -0.19
CCDC40-209ENST00000573474 ABHD2P08910 425 aa13.86□□□□□ -0.19
CCDC40-209ENST00000573474 NUDT17P0C025 328 aa13.86□□□□□ -0.19
CCDC40-209ENST00000573474 FOSL2P15408 326 aa13.86□□□□□ -0.19
CCDC40-209ENST00000573474 CTSOP43234 321 aaPredicted RBP13.86□□□□□ -0.19
CCDC40-209ENST00000573474 RGRP47804 291 aa13.86□□□□□ -0.19
CCDC40-209ENST00000573474 SLC6A11P48066 632 aa13.86□□□□□ -0.19
CCDC40-209ENST00000573474 CSNK1DP48730 415 aa13.86□□□□□ -0.19
CCDC40-209ENST00000573474 SESN2P58004 480 aaPredicted RBP13.86□□□□□ -0.19
CCDC40-209ENST00000573474 CDH17Q12864 832 aa13.86□□□□□ -0.19
CCDC40-209ENST00000573474 MTM1Q13496 603 aa13.86□□□□□ -0.19
CCDC40-209ENST00000573474 OLIG2Q13516 323 aa13.86□□□□□ -0.19
CCDC40-209ENST00000573474 GEN1Q17RS7 908 aa13.86□□□□□ -0.19
CCDC40-209ENST00000573474 GRAMD4Q6IC98 578 aa13.86□□□□□ -0.19
CCDC40-209ENST00000573474 RANBP10Q6VN20 620 aa13.86□□□□□ -0.19
CCDC40-209ENST00000573474 Q7L0L9 218 aa13.86□□□□□ -0.19
CCDC40-209ENST00000573474 C12orf40Q86WS4 652 aa13.86□□□□□ -0.19
CCDC40-209ENST00000573474 AGGF1Q8N302 714 aaeCLIP13.86□□□□□ -0.19
CCDC40-209ENST00000573474 ISG20Q96AZ6 181 aaKnown RBP13.86□□□□□ -0.19
CCDC40-209ENST00000573474 EBNA1BP2Q99848 306 aaKnown RBP13.86□□□□□ -0.19
CCDC40-209ENST00000573474 RPP25Q9BUL9 199 aaKnown RBP13.86□□□□□ -0.19
CCDC40-209ENST00000573474 CEP44Q9C0F1 390 aa13.86□□□□□ -0.19
CCDC40-209ENST00000573474 NOD2Q9HC29 1040 aa13.86□□□□□ -0.19
CCDC40-209ENST00000573474 LRRC4CQ9HCJ2 640 aa13.86□□□□□ -0.19
CCDC40-209ENST00000573474 ERVW-1Q9UQF0 538 aa13.86□□□□□ -0.19
CCDC40-209ENST00000573474 PLAAQ9Y263 795 aa13.86□□□□□ -0.19
CCDC40-209ENST00000573474 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.86□□□□□ -0.19
CCDC40-209ENST00000573474 NUMBLQ9Y6R0 609 aa13.86□□□□□ -0.19
CCDC40-209ENST00000573474 MAGEB16A2A368 324 aa13.85□□□□□ -0.19
CCDC40-209ENST00000573474 TIMM44O43615 452 aa13.85□□□□□ -0.19
CCDC40-209ENST00000573474 EPOP01588 193 aa13.85□□□□□ -0.19
CCDC40-209ENST00000573474 ATP5BP06576 529 aaKnown RBP13.85□□□□□ -0.19
CCDC40-209ENST00000573474 GSTA2P09210 222 aa13.85□□□□□ -0.19
CCDC40-209ENST00000573474 SRCP12931 536 aa13.85□□□□□ -0.19
CCDC40-209ENST00000573474 MGAT1P26572 445 aa13.85□□□□□ -0.19
CCDC40-209ENST00000573474 PHBP35232 272 aa13.85□□□□□ -0.19
CCDC40-209ENST00000573474 VASPP50552 380 aaPredicted RBP13.85□□□□□ -0.19
CCDC40-209ENST00000573474 EIF3BP55884 814 aaKnown RBP13.85□□□□□ -0.19
CCDC40-209ENST00000573474 AP1S1P61966 158 aa13.85□□□□□ -0.19
CCDC40-209ENST00000573474 CDK18Q07002 472 aa13.85□□□□□ -0.19
CCDC40-209ENST00000573474 IHHQ14623 411 aa13.85□□□□□ -0.19
CCDC40-209ENST00000573474 PCSK7Q16549 785 aa13.85□□□□□ -0.19
CCDC40-209ENST00000573474 ITPRIPL2Q3MIP1 535 aa13.85□□□□□ -0.19
CCDC40-209ENST00000573474 TMEM215Q68D42 235 aa13.85□□□□□ -0.19
CCDC40-209ENST00000573474 DENND5AQ6IQ26 1287 aa13.85□□□□□ -0.19
CCDC40-209ENST00000573474 NCEH1Q6PIU2 408 aa13.85□□□□□ -0.19
CCDC40-209ENST00000573474 SRLQ86TD4 932 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms