RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 IGSF5Q9NSI5 407 aa16.5■□□□□ 0.23
CLK3-223ENST00000568488 KCNK4Q9NYG8 393 aa16.5■□□□□ 0.23
CLK3-223ENST00000568488 ANAPC2Q9UJX6 822 aa16.5■□□□□ 0.23
CLK3-223ENST00000568488 PNMA8BQ9ULN7 279 aaPredicted RBP16.5■□□□□ 0.23
CLK3-223ENST00000568488 A0A1W2PQ27 194 aa16.49■□□□□ 0.23
CLK3-223ENST00000568488 A0A1W2PQ64 194 aa16.49■□□□□ 0.23
CLK3-223ENST00000568488 A0A1W2PQC6 194 aa16.49■□□□□ 0.23
CLK3-223ENST00000568488 CLDN11O75508 207 aa16.49■□□□□ 0.23
CLK3-223ENST00000568488 RHOCP08134 193 aa16.49■□□□□ 0.23
CLK3-223ENST00000568488 SLC2A3P11169 496 aa16.49■□□□□ 0.23
CLK3-223ENST00000568488 L1CAMP32004 1257 aa16.49■□□□□ 0.23
CLK3-223ENST00000568488 CCR1P32246 355 aa16.49■□□□□ 0.23
CLK3-223ENST00000568488 DNA2P51530 1060 aa16.49■□□□□ 0.23
CLK3-223ENST00000568488 YWHAZP63104 245 aaKnown RBP16.49■□□□□ 0.23
CLK3-223ENST00000568488 BEND5Q7L4P6 421 aa16.49■□□□□ 0.23
CLK3-223ENST00000568488 DTX1Q86Y01 620 aa16.49■□□□□ 0.23
CLK3-223ENST00000568488 PSMB7Q99436 277 aa16.49■□□□□ 0.23
CLK3-223ENST00000568488 CMKLR1Q99788 373 aa16.49■□□□□ 0.23
CLK3-223ENST00000568488 C1QTNF2Q9BXJ5 285 aa16.49■□□□□ 0.23
CLK3-223ENST00000568488 SLC12A9Q9BXP2 914 aa16.49■□□□□ 0.23
CLK3-223ENST00000568488 ZNF71Q9NQZ8 489 aaPredicted RBP16.49■□□□□ 0.23
CLK3-223ENST00000568488 VPS51Q9UID3 782 aa16.49■□□□□ 0.23
CLK3-223ENST00000568488 PLAAQ9Y263 795 aa16.49■□□□□ 0.23
CLK3-223ENST00000568488 NBASA2RRP1 2371 aa16.49■□□□□ 0.23
CLK3-223ENST00000568488 C9orf172C9J069 976 aa16.48■□□□□ 0.23
CLK3-223ENST00000568488 CETN3O15182 167 aa16.48■□□□□ 0.23
CLK3-223ENST00000568488 IGLV3-25P01717 112 aa16.48■□□□□ 0.23
CLK3-223ENST00000568488 CTSEP14091 401 aa16.48■□□□□ 0.23
CLK3-223ENST00000568488 ACADSBP45954 432 aa16.48■□□□□ 0.23
CLK3-223ENST00000568488 CCR10P46092 362 aa16.48■□□□□ 0.23
CLK3-223ENST00000568488 MCCD1P59942 119 aaPredicted RBP16.48■□□□□ 0.23
CLK3-223ENST00000568488 CDK17Q00537 523 aa16.48■□□□□ 0.23
CLK3-223ENST00000568488 PPARDQ03181 441 aa16.48■□□□□ 0.23
CLK3-223ENST00000568488 TMEM164Q5U3C3 297 aa16.48■□□□□ 0.23
CLK3-223ENST00000568488 C22orf39Q6P5X5 142 aa16.48■□□□□ 0.23
CLK3-223ENST00000568488 GUF1Q8N442 669 aaKnown RBP16.48■□□□□ 0.23
CLK3-223ENST00000568488 PCDH19Q8TAB3 1148 aa16.48■□□□□ 0.23
CLK3-223ENST00000568488 TMEM159Q96B96 161 aa16.48■□□□□ 0.23
CLK3-223ENST00000568488 TBATAQ96M53 351 aa16.48■□□□□ 0.23
CLK3-223ENST00000568488 SIK2Q9H0K1 926 aa16.48■□□□□ 0.23
CLK3-223ENST00000568488 DDIT4Q9NX09 232 aa16.48■□□□□ 0.23
CLK3-223ENST00000568488 GPR34Q9UPC5 381 aa16.48■□□□□ 0.23
CLK3-223ENST00000568488 TBC1D30Q9Y2I9 924 aa16.48■□□□□ 0.23
CLK3-223ENST00000568488 COQ4Q9Y3A0 265 aa16.48■□□□□ 0.23
CLK3-223ENST00000568488 WASF2Q9Y6W5 498 aa16.48■□□□□ 0.23
CLK3-223ENST00000568488 AP1G1O43747 822 aa16.47■□□□□ 0.23
CLK3-223ENST00000568488 ITGB7P26010 798 aa16.47■□□□□ 0.23
CLK3-223ENST00000568488 CLCN6P51797 869 aa16.47■□□□□ 0.23
CLK3-223ENST00000568488 CDH4P55283 916 aa16.47■□□□□ 0.23
CLK3-223ENST00000568488 ELOCQ15369 112 aa16.47■□□□□ 0.23
CLK3-223ENST00000568488 TAF5Q15542 800 aa16.47■□□□□ 0.23
CLK3-223ENST00000568488 PHF19Q5T6S3 580 aa16.47■□□□□ 0.23
CLK3-223ENST00000568488 PARS2Q7L3T8 475 aaKnown RBP16.47■□□□□ 0.23
CLK3-223ENST00000568488 RD3Q7Z3Z2 195 aa16.47■□□□□ 0.23
CLK3-223ENST00000568488 VPS36Q86VN1 386 aa16.47■□□□□ 0.23
CLK3-223ENST00000568488 HID1Q8IV36 788 aa16.47■□□□□ 0.23
CLK3-223ENST00000568488 HEPHQ9BQS7 1158 aa16.47■□□□□ 0.23
CLK3-223ENST00000568488 PLEKHB1Q9UF11 243 aaPredicted RBP16.47■□□□□ 0.23
CLK3-223ENST00000568488 HS3ST4Q9Y661 456 aa16.47■□□□□ 0.23
CLK3-223ENST00000568488 TEP1Q99973 2627 aaKnown RBP16.47■□□□□ 0.23
CLK3-223ENST00000568488 CREBBPQ92793 2442 aa16.46■□□□□ 0.23
CLK3-223ENST00000568488 TSPAN6O43657 245 aa16.46■□□□□ 0.23
CLK3-223ENST00000568488 CNTN5O94779 1100 aa16.46■□□□□ 0.23
CLK3-223ENST00000568488 RHOBTB3O94955 611 aa16.46■□□□□ 0.23
CLK3-223ENST00000568488 ADCY5O95622 1261 aa16.46■□□□□ 0.23
CLK3-223ENST00000568488 ALPIP09923 528 aa16.46■□□□□ 0.23
CLK3-223ENST00000568488 CD82P27701 267 aa16.46■□□□□ 0.23
CLK3-223ENST00000568488 EIF4A3P38919 411 aaKnown RBP16.46■□□□□ 0.23
CLK3-223ENST00000568488 GPD2P43304 727 aa16.46■□□□□ 0.23
CLK3-223ENST00000568488 BLKP51451 505 aa16.46■□□□□ 0.23
CLK3-223ENST00000568488 YPEL5P62699 121 aa16.46■□□□□ 0.23
CLK3-223ENST00000568488 EIF4EBP2Q13542 120 aaPredicted RBP16.46■□□□□ 0.23
CLK3-223ENST00000568488 ZSCAN30Q86W11 494 aa16.46■□□□□ 0.23
CLK3-223ENST00000568488 CCNJLQ8IV13 435 aa16.46■□□□□ 0.23
CLK3-223ENST00000568488 PPM1KQ8N3J5 372 aa16.46■□□□□ 0.23
CLK3-223ENST00000568488 FSTL5Q8N475 847 aaPredicted RBP16.46■□□□□ 0.23
CLK3-223ENST00000568488 DENND6BQ8NEG7 585 aa16.46■□□□□ 0.23
CLK3-223ENST00000568488 OR6C4Q8NGE1 309 aa16.46■□□□□ 0.23
CLK3-223ENST00000568488 KAT5Q92993 513 aa16.46■□□□□ 0.23
CLK3-223ENST00000568488 TSACCQ96A04 125 aaPredicted RBP16.46■□□□□ 0.23
CLK3-223ENST00000568488 MED15Q96RN5 788 aa16.46■□□□□ 0.23
CLK3-223ENST00000568488 SPON2Q9BUD6 331 aa16.46■□□□□ 0.23
CLK3-223ENST00000568488 THAP9Q9H5L6 903 aa16.46■□□□□ 0.23
CLK3-223ENST00000568488 GGT7Q9UJ14 662 aa16.46■□□□□ 0.23
CLK3-223ENST00000568488 TUBD1Q9UJT1 453 aa16.46■□□□□ 0.23
CLK3-223ENST00000568488 ITM2BQ9Y287 266 aa16.46■□□□□ 0.23
CLK3-223ENST00000568488 RNF215Q9Y6U7 377 aa16.46■□□□□ 0.23
CLK3-223ENST00000568488 A0A0D9SEW6 157 aa16.45■□□□□ 0.22
CLK3-223ENST00000568488 E5RJQ4 531 aa16.45■□□□□ 0.22
CLK3-223ENST00000568488 STMND1H3BQB6 276 aa16.45■□□□□ 0.22
CLK3-223ENST00000568488 MYL1P05976 194 aa16.45■□□□□ 0.22
CLK3-223ENST00000568488 IGFALSP35858 605 aa16.45■□□□□ 0.22
CLK3-223ENST00000568488 ABL2P42684 1182 aa16.45■□□□□ 0.22
CLK3-223ENST00000568488 RPL34P49207 117 aaKnown RBP16.45■□□□□ 0.22
CLK3-223ENST00000568488 ATP1A2P50993 1020 aa16.45■□□□□ 0.22
CLK3-223ENST00000568488 ZFP36L1Q07352 338 aaKnown RBP16.45■□□□□ 0.22
CLK3-223ENST00000568488 NME3Q13232 169 aa16.45■□□□□ 0.22
CLK3-223ENST00000568488 EDRF1Q3B7T1 1238 aa16.45■□□□□ 0.22
CLK3-223ENST00000568488 ZCWPW2Q504Y3 356 aa16.45■□□□□ 0.22
CLK3-223ENST00000568488 ALFQ53S48 1182 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms