RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 SF3B4Q15427 424 aaKnown RBP eCLIP3.04□□□□□ -1.92
VPS35-207ENST00000568191 SULT6B1Q6IMI4 303 aa3.04□□□□□ -1.92
VPS35-207ENST00000568191 C1orf228Q6PIY5 440 aa3.04□□□□□ -1.92
VPS35-207ENST00000568191 TOGARAM2Q6ZUX3 1019 aa3.04□□□□□ -1.92
VPS35-207ENST00000568191 SYT13Q7L8C5 426 aa3.04□□□□□ -1.92
VPS35-207ENST00000568191 RASGRP2Q7LDG7 609 aa3.04□□□□□ -1.92
VPS35-207ENST00000568191 ZNF329Q86UD4 541 aa3.04□□□□□ -1.92
VPS35-207ENST00000568191 CCDC146Q8IYE0 955 aa3.04□□□□□ -1.92
VPS35-207ENST00000568191 RFLNBQ8N5W9 214 aa3.04□□□□□ -1.92
VPS35-207ENST00000568191 ANKRD44Q8N8A2 993 aa3.04□□□□□ -1.92
VPS35-207ENST00000568191 ATOH1Q92858 354 aaPredicted RBP3.04□□□□□ -1.92
VPS35-207ENST00000568191 SH3KBP1Q96B97 665 aa3.04□□□□□ -1.92
VPS35-207ENST00000568191 RNF183Q96D59 192 aa3.04□□□□□ -1.92
VPS35-207ENST00000568191 OR1F2PQ96R84 312 aa3.04□□□□□ -1.92
VPS35-207ENST00000568191 NPLQ9BXD5 320 aaPredicted RBP3.04□□□□□ -1.92
VPS35-207ENST00000568191 ENTPD7Q9NQZ7 604 aa3.04□□□□□ -1.92
VPS35-207ENST00000568191 TMEM51Q9NW97 253 aa3.04□□□□□ -1.92
VPS35-207ENST00000568191 IFT80Q9P2H3 777 aaPredicted RBP3.04□□□□□ -1.92
VPS35-207ENST00000568191 CNPY2Q9Y2B0 182 aa3.04□□□□□ -1.92
VPS35-207ENST00000568191 MAGEA13PA6NCF6 341 aa3.03□□□□□ -1.92
VPS35-207ENST00000568191 SRRM3A6NNA2 597 aaPredicted RBP3.03□□□□□ -1.92
VPS35-207ENST00000568191 H0Y3Z8 333 aa3.03□□□□□ -1.92
VPS35-207ENST00000568191 ACKR2O00590 384 aa3.03□□□□□ -1.92
VPS35-207ENST00000568191 CH25HO95992 272 aa3.03□□□□□ -1.92
VPS35-207ENST00000568191 LYL1P12980 280 aa3.03□□□□□ -1.92
VPS35-207ENST00000568191 PDIA3P30101 505 aaKnown RBP3.03□□□□□ -1.92
VPS35-207ENST00000568191 AVPR2P30518 371 aa3.03□□□□□ -1.92
VPS35-207ENST00000568191 GJC1P36383 396 aa3.03□□□□□ -1.92
VPS35-207ENST00000568191 MXI1P50539 228 aa3.03□□□□□ -1.92
VPS35-207ENST00000568191 FOXO1Q12778 655 aa3.03□□□□□ -1.92
VPS35-207ENST00000568191 MYBPC2Q14324 1141 aa3.03□□□□□ -1.92
VPS35-207ENST00000568191 IL13RA2Q14627 380 aa3.03□□□□□ -1.92
VPS35-207ENST00000568191 ZRSR1Q15695 479 aaKnown RBP3.03□□□□□ -1.92
VPS35-207ENST00000568191 CALCRLQ16602 461 aa3.03□□□□□ -1.92
VPS35-207ENST00000568191 CCDC38Q502W7 563 aa3.03□□□□□ -1.92
VPS35-207ENST00000568191 LRRC24Q50LG9 513 aa3.03□□□□□ -1.92
VPS35-207ENST00000568191 TANGO2Q6ICL3 276 aa3.03□□□□□ -1.92
VPS35-207ENST00000568191 RETSATQ6NUM9 610 aa3.03□□□□□ -1.92
VPS35-207ENST00000568191 LIN28BQ6ZN17 250 aaKnown RBP eCLIP3.03□□□□□ -1.92
VPS35-207ENST00000568191 LMNTD1Q8N9Z9 388 aa3.03□□□□□ -1.92
VPS35-207ENST00000568191 DNAAF1Q8NEP3 725 aa3.03□□□□□ -1.92
VPS35-207ENST00000568191 LILRB1Q8NHL6 650 aaPredicted RBP3.03□□□□□ -1.92
VPS35-207ENST00000568191 WFIKKN2Q8TEU8 576 aa3.03□□□□□ -1.92
VPS35-207ENST00000568191 NOC3LQ8WTT2 800 aaKnown RBP3.03□□□□□ -1.92
VPS35-207ENST00000568191 SDCCAG3Q96C92 435 aa3.03□□□□□ -1.92
VPS35-207ENST00000568191 BICD1Q96G01 975 aa3.03□□□□□ -1.92
VPS35-207ENST00000568191 SLC39A13Q96H72 371 aa3.03□□□□□ -1.92
VPS35-207ENST00000568191 ZNF385AQ96PM9 386 aaKnown RBP3.03□□□□□ -1.92
VPS35-207ENST00000568191 PPP1R10Q96QC0 940 aaKnown RBP3.03□□□□□ -1.92
VPS35-207ENST00000568191 NPFFR1Q9GZQ6 430 aa3.03□□□□□ -1.92
VPS35-207ENST00000568191 PLEKHA2Q9HB19 425 aa3.03□□□□□ -1.92
VPS35-207ENST00000568191 MALT1Q9UDY8 824 aa3.03□□□□□ -1.92
VPS35-207ENST00000568191 MORC2Q9Y6X9 1032 aaPredicted RBP3.03□□□□□ -1.92
VPS35-207ENST00000568191 A0A0A0MQY5 61 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 ABHD14A-ACY1A0A1B0GW23 586 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 TARSL2A2RTX5 802 aaKnown RBP3.02□□□□□ -1.93
VPS35-207ENST00000568191 ERVV-2B6SEH9 535 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 F5H423 210 aaPredicted RBP3.02□□□□□ -1.93
VPS35-207ENST00000568191 ANP32CO43423 234 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 TIPRLO75663 272 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 GAGE7O76087 117 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 VNN2O95498 520 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 GAGE12FP0CL80 117 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 GAGE12GP0CL81 117 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 GAGE12IP0CL82 117 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 TFPIP10646 304 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 ACP5P13686 325 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 ARSAP15289 507 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 ITGB8P26012 769 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 CST5P28325 142 aaPredicted RBP3.02□□□□□ -1.93
VPS35-207ENST00000568191 FMO4P31512 558 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 LIFRP42702 1097 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 HTR3AP46098 478 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 RGS19P49795 217 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 MVDP53602 400 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 HDAC4P56524 1084 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 CYP4A11Q02928 519 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 GAGE1Q13065 139 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 GAGE4Q13068 117 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 MYBPHQ13203 477 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 CTTNQ14247 550 aaKnown RBP3.02□□□□□ -1.93
VPS35-207ENST00000568191 LPIN1Q14693 890 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 SMAD1Q15797 465 aaKnown RBP3.02□□□□□ -1.93
VPS35-207ENST00000568191 PDCD2Q16342 344 aaPredicted RBP3.02□□□□□ -1.93
VPS35-207ENST00000568191 AP5B1Q2VPB7 878 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 XKR9Q5GH70 373 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 FAM76BQ5HYJ3 339 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 ANKRD45Q5TZF3 282 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 DENND6AQ8IWF6 608 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 POC1AQ8NBT0 407 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 KCNH5Q8NCM2 988 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 RASSF8Q8NHQ8 419 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 TRIB2Q92519 343 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 KTI12Q96EK9 354 aaPredicted RBP3.02□□□□□ -1.93
VPS35-207ENST00000568191 FEM1CQ96JP0 617 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 LRFN5Q96NI6 719 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 IL17FQ96PD4 163 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 CRB3Q9BUF7 120 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 ATP8A2Q9NTI2 1148 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 SPATS2LQ9NUQ6 558 aaKnown RBP3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms