RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 SLC1A2P43004 574 aa20.53■□□□□ 0.88
CLN3-230ENST00000568076 DSC2Q02487 901 aa20.53■□□□□ 0.88
CLN3-230ENST00000568076 MSLNQ13421 630 aaPredicted RBP20.53■□□□□ 0.88
CLN3-230ENST00000568076 SEPT6Q14141 434 aa20.53■□□□□ 0.88
CLN3-230ENST00000568076 PREPLQ4J6C6 727 aaPredicted RBP20.53■□□□□ 0.88
CLN3-230ENST00000568076 RAPH1Q70E73 1250 aa20.53■□□□□ 0.88
CLN3-230ENST00000568076 SLC41A1Q8IVJ1 513 aa20.53■□□□□ 0.88
CLN3-230ENST00000568076 TEX26Q8N6G2 289 aa20.53■□□□□ 0.88
CLN3-230ENST00000568076 SP110Q9HB58 689 aa20.53■□□□□ 0.88
CLN3-230ENST00000568076 CPSF2Q9P2I0 782 aaKnown RBP20.53■□□□□ 0.88
CLN3-230ENST00000568076 SERPINA6P08185 405 aa20.52■□□□□ 0.88
CLN3-230ENST00000568076 CPA2P48052 419 aa20.52■□□□□ 0.88
CLN3-230ENST00000568076 ITKQ08881 620 aa20.52■□□□□ 0.88
CLN3-230ENST00000568076 KIAA0930Q6ICG6 404 aaPredicted RBP20.52■□□□□ 0.88
CLN3-230ENST00000568076 PGBD5Q8N414 524 aa20.52■□□□□ 0.88
CLN3-230ENST00000568076 PPP4R1Q8TF05 950 aa20.52■□□□□ 0.88
CLN3-230ENST00000568076 SCLYQ96I15 445 aa20.52■□□□□ 0.88
CLN3-230ENST00000568076 RPRD1AQ96P16 312 aaPredicted RBP20.52■□□□□ 0.88
CLN3-230ENST00000568076 TTPALQ9BTX7 342 aa20.52■□□□□ 0.88
CLN3-230ENST00000568076 DENND2DQ9H6A0 471 aaPredicted RBP20.52■□□□□ 0.88
CLN3-230ENST00000568076 PCDHB12Q9Y5F1 795 aa20.52■□□□□ 0.88
CLN3-230ENST00000568076 CDY1Q9Y6F8 540 aa20.52■□□□□ 0.88
CLN3-230ENST00000568076 PITPNM1O00562 1244 aa20.52■□□□□ 0.87
CLN3-230ENST00000568076 GYG2O15488 501 aa20.52■□□□□ 0.87
CLN3-230ENST00000568076 ATP5BP06576 529 aaKnown RBP20.52■□□□□ 0.87
CLN3-230ENST00000568076 ENO1P06733 434 aaKnown RBP20.52■□□□□ 0.87
CLN3-230ENST00000568076 ALOX15P16050 662 aaPredicted RBP20.52■□□□□ 0.87
CLN3-230ENST00000568076 UBAP2LQ14157 1087 aaKnown RBP20.52■□□□□ 0.87
CLN3-230ENST00000568076 RABGAP1LQ5R372 815 aa20.52■□□□□ 0.87
CLN3-230ENST00000568076 RFWD3Q6PCD5 774 aa20.52■□□□□ 0.87
CLN3-230ENST00000568076 CEP97Q8IW35 865 aa20.52■□□□□ 0.87
CLN3-230ENST00000568076 CENPLQ8N0S6 344 aaPredicted RBP20.52■□□□□ 0.87
CLN3-230ENST00000568076 C2CD4AQ8NCU7 369 aaPredicted RBP20.52■□□□□ 0.87
CLN3-230ENST00000568076 TMEM175Q9BSA9 504 aa20.52■□□□□ 0.87
CLN3-230ENST00000568076 DONSONQ9NYP3 566 aa20.52■□□□□ 0.87
CLN3-230ENST00000568076 TLK1Q9UKI8 766 aa20.52■□□□□ 0.87
CLN3-230ENST00000568076 ANKRD6Q9Y2G4 727 aa20.52■□□□□ 0.87
CLN3-230ENST00000568076 SLC38A8A6NNN8 435 aa20.51■□□□□ 0.87
CLN3-230ENST00000568076 PRR5-ARHGAP8B1AHC4 643 aa20.51■□□□□ 0.87
CLN3-230ENST00000568076 H7C4K7 107 aa20.51■□□□□ 0.87
CLN3-230ENST00000568076 TK2O00142 265 aa20.51■□□□□ 0.87
CLN3-230ENST00000568076 TLR5O60602 858 aa20.51■□□□□ 0.87
CLN3-230ENST00000568076 PEX11AO75192 247 aa20.51■□□□□ 0.87
CLN3-230ENST00000568076 ACVRL1P37023 503 aa20.51■□□□□ 0.87
CLN3-230ENST00000568076 KCNQ1P51787 676 aa20.51■□□□□ 0.87
CLN3-230ENST00000568076 ARHGAP8P85298 464 aa20.51■□□□□ 0.87
CLN3-230ENST00000568076 RING1Q06587 406 aa20.51■□□□□ 0.87
CLN3-230ENST00000568076 TNK2Q07912 1038 aa20.51■□□□□ 0.87
CLN3-230ENST00000568076 SMARCB1Q12824 385 aa20.51■□□□□ 0.87
CLN3-230ENST00000568076 ELAVL2Q12926 359 aaKnown RBP20.51■□□□□ 0.87
CLN3-230ENST00000568076 ZNF460Q14592 562 aa20.51■□□□□ 0.87
CLN3-230ENST00000568076 POLD3Q15054 466 aaPredicted RBP20.51■□□□□ 0.87
CLN3-230ENST00000568076 UGP2Q16851 508 aa20.51■□□□□ 0.87
CLN3-230ENST00000568076 ANKS3Q6ZW76 656 aa20.51■□□□□ 0.87
CLN3-230ENST00000568076 ZNF354CQ86Y25 554 aa20.51■□□□□ 0.87
CLN3-230ENST00000568076 FBXO27Q8NI29 283 aa20.51■□□□□ 0.87
CLN3-230ENST00000568076 ARRDC2Q8TBH0 407 aa20.51■□□□□ 0.87
CLN3-230ENST00000568076 SH3TC2Q8TF17 1288 aa20.51■□□□□ 0.87
CLN3-230ENST00000568076 KCTD4Q8WVF5 259 aa20.51■□□□□ 0.87
CLN3-230ENST00000568076 ACE2Q9BYF1 805 aaPredicted RBP20.51■□□□□ 0.87
CLN3-230ENST00000568076 STN1Q9H668 368 aaKnown RBP20.51■□□□□ 0.87
CLN3-230ENST00000568076 TASP1Q9H6P5 420 aa20.51■□□□□ 0.87
CLN3-230ENST00000568076 COMMD8Q9NX08 183 aa20.51■□□□□ 0.87
CLN3-230ENST00000568076 NKX1-2Q9UD57 310 aaPredicted RBP20.51■□□□□ 0.87
CLN3-230ENST00000568076 EPB41L3Q9Y2J2 1087 aaPredicted RBP20.51■□□□□ 0.87
CLN3-230ENST00000568076 RAMP2O60895 175 aa20.5■□□□□ 0.87
CLN3-230ENST00000568076 NUMBP49757 651 aa20.5■□□□□ 0.87
CLN3-230ENST00000568076 IDH3AP50213 366 aa20.5■□□□□ 0.87
CLN3-230ENST00000568076 SERINC3Q13530 473 aa20.5■□□□□ 0.87
CLN3-230ENST00000568076 SLC12A1Q13621 1099 aa20.5■□□□□ 0.87
CLN3-230ENST00000568076 ZNF470Q6ECI4 717 aa20.5■□□□□ 0.87
CLN3-230ENST00000568076 TADA1Q96BN2 335 aa20.5■□□□□ 0.87
CLN3-230ENST00000568076 MOCOSQ96EN8 888 aa20.5■□□□□ 0.87
CLN3-230ENST00000568076 MRPL9Q9BYD2 267 aaKnown RBP20.5■□□□□ 0.87
CLN3-230ENST00000568076 PRKD2Q9BZL6 878 aa20.5■□□□□ 0.87
CLN3-230ENST00000568076 VPS45Q9NRW7 570 aa20.5■□□□□ 0.87
CLN3-230ENST00000568076 OXSMQ9NWU1 459 aa20.5■□□□□ 0.87
CLN3-230ENST00000568076 DNAJC28Q9NX36 388 aa20.5■□□□□ 0.87
CLN3-230ENST00000568076 SCN5AQ14524 2016 aa20.5■□□□□ 0.87
CLN3-230ENST00000568076 FAM95CA0A1B0GW59 222 aa20.5■□□□□ 0.87
CLN3-230ENST00000568076 AURKAO14965 403 aa20.5■□□□□ 0.87
CLN3-230ENST00000568076 TRIM13O60858 407 aa20.5■□□□□ 0.87
CLN3-230ENST00000568076 GJB3O75712 270 aa20.5■□□□□ 0.87
CLN3-230ENST00000568076 PAMP19021 973 aa20.5■□□□□ 0.87
CLN3-230ENST00000568076 ETFBP38117 255 aa20.5■□□□□ 0.87
CLN3-230ENST00000568076 THOC5Q13769 683 aaKnown RBP20.5■□□□□ 0.87
CLN3-230ENST00000568076 ACCSLQ4AC99 568 aa20.5■□□□□ 0.87
CLN3-230ENST00000568076 VWA5B1Q5TIE3 1220 aa20.5■□□□□ 0.87
CLN3-230ENST00000568076 TEX9Q8N6V9 391 aa20.5■□□□□ 0.87
CLN3-230ENST00000568076 ZNF781Q8N8C0 355 aa20.5■□□□□ 0.87
CLN3-230ENST00000568076 ZNF296Q8WUU4 475 aaPredicted RBP20.5■□□□□ 0.87
CLN3-230ENST00000568076 GATA5Q9BWX5 397 aaPredicted RBP20.5■□□□□ 0.87
CLN3-230ENST00000568076 UBE2OQ9C0C9 1292 aaKnown RBP20.5■□□□□ 0.87
CLN3-230ENST00000568076 EBF2Q9HAK2 575 aa20.5■□□□□ 0.87
CLN3-230ENST00000568076 HEATR9A2RTY3 570 aa20.49■□□□□ 0.87
CLN3-230ENST00000568076 HOXA2O43364 376 aa20.49■□□□□ 0.87
CLN3-230ENST00000568076 PQBP1O60828 265 aaKnown RBP20.49■□□□□ 0.87
CLN3-230ENST00000568076 TACR2P21452 398 aa20.49■□□□□ 0.87
CLN3-230ENST00000568076 OR1E1P30953 314 aa20.49■□□□□ 0.87
CLN3-230ENST00000568076 GLRBP48167 497 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms