RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 ZNF362Q5T0B9 420 aaPredicted RBP5.26□□□□□ -1.57
VPS35-205ENST00000563984 RBM20Q5T481 1227 aaKnown RBP5.26□□□□□ -1.57
VPS35-205ENST00000563984 SNX30Q5VWJ9 437 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 ATL3Q6DD88 541 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 KRT28Q7Z3Y7 464 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 AKAP14Q86UN6 197 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 PRIMA1Q86XR5 153 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 PDSS2Q86YH6 399 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 ST13P4Q8IZP2 240 aaPredicted RBP5.26□□□□□ -1.57
VPS35-205ENST00000563984 GALNT15Q8N3T1 639 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 PRR18Q8N4B5 295 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 OR6S1Q8NH40 331 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 CEP76Q8TAP6 659 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 GRK7Q8WTQ7 553 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 SEPT8Q92599 483 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 MED30Q96HR3 178 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 C7orf34Q96L11 122 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 CNOT6LQ96LI5 555 aaKnown RBP5.26□□□□□ -1.57
VPS35-205ENST00000563984 KLHL32Q96NJ5 620 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 PPP1R10Q96QC0 940 aaKnown RBP5.26□□□□□ -1.57
VPS35-205ENST00000563984 TXN2Q99757 166 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 VRK1Q99986 396 aaPredicted RBP5.26□□□□□ -1.57
VPS35-205ENST00000563984 BCL7BQ9BQE9 202 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 TLR10Q9BXR5 811 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 LSG1Q9H089 658 aaKnown RBP5.26□□□□□ -1.57
VPS35-205ENST00000563984 C1orf21Q9H246 121 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 LRRC19Q9H756 370 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 DCTPP1Q9H773 170 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 RPRD1BQ9NQG5 326 aaKnown RBP5.26□□□□□ -1.57
VPS35-205ENST00000563984 RLIMQ9NVW2 624 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 HMGXB4Q9UGU5 601 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 DDX20Q9UHI6 824 aaKnown RBP5.26□□□□□ -1.57
VPS35-205ENST00000563984 LCMT1Q9UIC8 334 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 VANGL2Q9ULK5 521 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 CHMP2BQ9UQN3 213 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 CDYLQ9Y232 598 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 STK38LQ9Y2H1 464 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 C15orf38-AP3S2A0A0A6YYH1 394 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 C1orf232A0A0U1RR37 186 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 FRMD3A2A2Y4 597 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 RGSL1A5PLK6 1076 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 TRIM43BA6NCK2 446 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 SPECC1L-ADORA2AF8WAN1 911 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 F2RL2O00254 374 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 KMOO15229 486 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 PEX1O43933 1283 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 CIDEAO60543 219 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 SOAT2O75908 522 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 TOMM70O94826 608 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 LARGE1O95461 756 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 ABCB1P08183 1280 aaPredicted RBP5.25□□□□□ -1.57
VPS35-205ENST00000563984 CALM1P0DP23 149 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 CALM2P0DP24 149 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 CALM3P0DP25 149 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 ALADP13716 330 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 EZRP15311 586 aaKnown RBP5.25□□□□□ -1.57
VPS35-205ENST00000563984 CTRB1P17538 263 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 PLA2G5P39877 138 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 DCAF7P61962 342 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 UBE2IP63279 158 aaKnown RBP5.25□□□□□ -1.57
VPS35-205ENST00000563984 FOXO1Q12778 655 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 TFCP2Q12800 502 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 SLC14A1Q13336 389 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 SNAPC2Q13487 334 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 GALEQ14376 348 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 KRT32Q14532 448 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 EFTUD2Q15029 972 aaKnown RBP eCLIP5.25□□□□□ -1.57
VPS35-205ENST00000563984 CYP4A22Q5TCH4 519 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 CTRB2Q6GPI1 263 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 CAVIN1Q6NZI2 390 aaKnown RBP5.25□□□□□ -1.57
VPS35-205ENST00000563984 SRGAP1Q7Z6B7 1085 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 ERO1BQ86YB8 467 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 TTC5Q8N0Z6 440 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 CPA6Q8N4T0 437 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 SCAIQ8N9R8 606 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 GMCL1P1Q8NEA9 526 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 MAGEC3Q8TD91 643 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 UCMAQ8WVF2 138 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 IFT81Q8WYA0 676 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 KAT2BQ92831 832 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 SCAMP4Q969E2 229 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 HDAC11Q96DB2 347 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 SGF29Q96ES7 293 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 CABS1Q96KC9 395 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 PPP1R13BQ96KQ4 1090 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 SGCZQ96LD1 299 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 JPH2Q9BR39 696 aaPredicted RBP5.25□□□□□ -1.57
VPS35-205ENST00000563984 C9orf16Q9BUW7 83 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 MXD3Q9BW11 206 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 TTLL2Q9BWV7 592 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 IMPG2Q9BZV3 1241 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 LY9Q9HBG7 655 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 TCF7L1Q9HCS4 588 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 PDE7BQ9NP56 450 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 CCDC177Q9NQR7 707 aaPredicted RBP5.25□□□□□ -1.57
VPS35-205ENST00000563984 OLA1Q9NTK5 396 aaKnown RBP5.25□□□□□ -1.57
VPS35-205ENST00000563984 INTS13Q9NVM9 706 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 ADPRHL2Q9NX46 363 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 HMG20BQ9P0W2 317 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 FNIP2Q9P278 1114 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms