RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 DGKAP23743 735 aa17.51■□□□□ 0.39
VPS9D1-203ENST00000563798 HNF1BP35680 557 aa17.51■□□□□ 0.39
VPS9D1-203ENST00000563798 DNA2P51530 1060 aa17.51■□□□□ 0.39
VPS9D1-203ENST00000563798 AIF1P55008 147 aa17.51■□□□□ 0.39
VPS9D1-203ENST00000563798 CYP4F3Q08477 520 aa17.51■□□□□ 0.39
VPS9D1-203ENST00000563798 FGL2Q14314 439 aa17.51■□□□□ 0.39
VPS9D1-203ENST00000563798 CCDC157Q569K6 752 aa17.51■□□□□ 0.39
VPS9D1-203ENST00000563798 ZNF805Q5CZA5 627 aa17.51■□□□□ 0.39
VPS9D1-203ENST00000563798 KYAT3Q6YP21 454 aaKnown RBP17.51■□□□□ 0.39
VPS9D1-203ENST00000563798 PARS2Q7L3T8 475 aaKnown RBP17.51■□□□□ 0.39
VPS9D1-203ENST00000563798 SLC22A18ASQ8N1D0 253 aa17.51■□□□□ 0.39
VPS9D1-203ENST00000563798 RTL3Q8N8U3 475 aaKnown RBP17.51■□□□□ 0.39
VPS9D1-203ENST00000563798 OR4C6Q8NH72 309 aa17.51■□□□□ 0.39
VPS9D1-203ENST00000563798 SYT11Q9BT88 431 aa17.51■□□□□ 0.39
VPS9D1-203ENST00000563798 C1QTNF2Q9BXJ5 285 aa17.51■□□□□ 0.39
VPS9D1-203ENST00000563798 OSBPL1AQ9BXW6 950 aa17.51■□□□□ 0.39
VPS9D1-203ENST00000563798 NOL6Q9H6R4 1146 aaKnown RBP17.51■□□□□ 0.39
VPS9D1-203ENST00000563798 RAXQ9Y2V3 346 aa17.51■□□□□ 0.39
VPS9D1-203ENST00000563798 ACTL7AQ9Y615 435 aa17.51■□□□□ 0.39
VPS9D1-203ENST00000563798 WASH4PA8MWX3 477 aa17.5■□□□□ 0.39
VPS9D1-203ENST00000563798 TRIM38O00635 465 aa17.5■□□□□ 0.39
VPS9D1-203ENST00000563798 POP4O95707 220 aaKnown RBP17.5■□□□□ 0.39
VPS9D1-203ENST00000563798 CCDC172P0C7W6 258 aa17.5■□□□□ 0.39
VPS9D1-203ENST00000563798 GIMD1P0DJR0 217 aa17.5■□□□□ 0.39
VPS9D1-203ENST00000563798 JUPP14923 745 aa17.5■□□□□ 0.39
VPS9D1-203ENST00000563798 YBEYP58557 167 aaPredicted RBP17.5■□□□□ 0.39
VPS9D1-203ENST00000563798 SNRPD1P62314 119 aaKnown RBP17.5■□□□□ 0.39
VPS9D1-203ENST00000563798 POLD3Q15054 466 aaPredicted RBP17.5■□□□□ 0.39
VPS9D1-203ENST00000563798 MYLK3Q32MK0 819 aa17.5■□□□□ 0.39
VPS9D1-203ENST00000563798 INO80DQ53TQ3 878 aaPredicted RBP17.5■□□□□ 0.39
VPS9D1-203ENST00000563798 PCMTD1Q96MG8 357 aaPredicted RBP17.5■□□□□ 0.39
VPS9D1-203ENST00000563798 KLF6Q99612 283 aaPredicted RBP17.5■□□□□ 0.39
VPS9D1-203ENST00000563798 MYOCQ99972 504 aa17.5■□□□□ 0.39
VPS9D1-203ENST00000563798 TM6SF2Q9BZW4 377 aa17.5■□□□□ 0.39
VPS9D1-203ENST00000563798 ZDHHC6Q9H6R6 413 aa17.5■□□□□ 0.39
VPS9D1-203ENST00000563798 FZD3Q9NPG1 666 aa17.5■□□□□ 0.39
VPS9D1-203ENST00000563798 MYO6Q9UM54 1294 aa17.5■□□□□ 0.39
VPS9D1-203ENST00000563798 MFHAS1Q9Y4C4 1052 aa17.5■□□□□ 0.39
VPS9D1-203ENST00000563798 ACACAQ13085 2346 aa17.5■□□□□ 0.39
VPS9D1-203ENST00000563798 KNTC1P50748 2209 aa17.49■□□□□ 0.39
VPS9D1-203ENST00000563798 GOLGA4Q13439 2230 aaKnown RBP17.49■□□□□ 0.39
VPS9D1-203ENST00000563798 A0A087WV48 116 aa17.49■□□□□ 0.39
VPS9D1-203ENST00000563798 C16orf96A6NNT2 1141 aa17.49■□□□□ 0.39
VPS9D1-203ENST00000563798 GOLGA6L22H0YM25 854 aa17.49■□□□□ 0.39
VPS9D1-203ENST00000563798 AREL1O15033 823 aa17.49■□□□□ 0.39
VPS9D1-203ENST00000563798 CCP110O43303 1012 aa17.49■□□□□ 0.39
VPS9D1-203ENST00000563798 SIGLEC6O43699 453 aa17.49■□□□□ 0.39
VPS9D1-203ENST00000563798 SDC3O75056 442 aa17.49■□□□□ 0.39
VPS9D1-203ENST00000563798 PIAS2O75928 621 aa17.49■□□□□ 0.39
VPS9D1-203ENST00000563798 PAK4O96013 591 aaPredicted RBP17.49■□□□□ 0.39
VPS9D1-203ENST00000563798 FERP16591 822 aa17.49■□□□□ 0.39
VPS9D1-203ENST00000563798 CDK11BP21127 795 aaKnown RBP17.49■□□□□ 0.39
VPS9D1-203ENST00000563798 CLDN2P57739 230 aa17.49■□□□□ 0.39
VPS9D1-203ENST00000563798 EFHC2Q5JST6 749 aa17.49■□□□□ 0.39
VPS9D1-203ENST00000563798 ACAD10Q6JQN1 1059 aa17.49■□□□□ 0.39
VPS9D1-203ENST00000563798 PPP1R2P3Q6NXS1 205 aa17.49■□□□□ 0.39
VPS9D1-203ENST00000563798 DNAJC24Q6P3W2 148 aa17.49■□□□□ 0.39
VPS9D1-203ENST00000563798 Q6ZSR6 202 aa17.49■□□□□ 0.39
VPS9D1-203ENST00000563798 IRF2BP2Q7Z5L9 587 aa17.49■□□□□ 0.39
VPS9D1-203ENST00000563798 MCOLN2Q8IZK6 566 aa17.49■□□□□ 0.39
VPS9D1-203ENST00000563798 DENND6BQ8NEG7 585 aa17.49■□□□□ 0.39
VPS9D1-203ENST00000563798 ARHGEF26Q96DR7 871 aa17.49■□□□□ 0.39
VPS9D1-203ENST00000563798 VCPIP1Q96JH7 1222 aa17.49■□□□□ 0.39
VPS9D1-203ENST00000563798 CNPY3Q9BT09 278 aa17.49■□□□□ 0.39
VPS9D1-203ENST00000563798 NRSN2Q9GZP1 204 aa17.49■□□□□ 0.39
VPS9D1-203ENST00000563798 FZD10Q9ULW2 581 aa17.49■□□□□ 0.39
VPS9D1-203ENST00000563798 LAMA5O15230 3695 aa17.49■□□□□ 0.39
VPS9D1-203ENST00000563798 ADAMTS20P59510 1910 aa17.49■□□□□ 0.39
VPS9D1-203ENST00000563798 SPTY2D1-AS1A0A0U1RR47 76 aa17.48■□□□□ 0.39
VPS9D1-203ENST00000563798 POM121BA6NF01 834 aa17.48■□□□□ 0.39
VPS9D1-203ENST00000563798 RAD51BO15315 384 aa17.48■□□□□ 0.39
VPS9D1-203ENST00000563798 SPINT1O43278 529 aa17.48■□□□□ 0.39
VPS9D1-203ENST00000563798 MBD3O95983 291 aa17.48■□□□□ 0.39
VPS9D1-203ENST00000563798 EPHB2P29323 1055 aa17.48■□□□□ 0.39
VPS9D1-203ENST00000563798 HTR7P34969 479 aa17.48■□□□□ 0.39
VPS9D1-203ENST00000563798 ABL2P42684 1182 aa17.48■□□□□ 0.39
VPS9D1-203ENST00000563798 RABIFP47224 123 aa17.48■□□□□ 0.39
VPS9D1-203ENST00000563798 RPL7AP62424 266 aaKnown RBP17.48■□□□□ 0.39
VPS9D1-203ENST00000563798 E2F1Q01094 437 aa17.48■□□□□ 0.39
VPS9D1-203ENST00000563798 TARDBPQ13148 414 aaKnown RBP eCLIP17.48■□□□□ 0.39
VPS9D1-203ENST00000563798 RTP5Q14D33 572 aa17.48■□□□□ 0.39
VPS9D1-203ENST00000563798 CCDC183Q5T5S1 534 aa17.48■□□□□ 0.39
VPS9D1-203ENST00000563798 HES3Q5TGS1 186 aa17.48■□□□□ 0.39
VPS9D1-203ENST00000563798 UMODL1-AS1Q8N2C9 162 aa17.48■□□□□ 0.39
VPS9D1-203ENST00000563798 PYROXD2Q8N2H3 581 aa17.48■□□□□ 0.39
VPS9D1-203ENST00000563798 FAM181AQ8N9Y4 354 aa17.48■□□□□ 0.39
VPS9D1-203ENST00000563798 BAP1Q92560 729 aa17.48■□□□□ 0.39
VPS9D1-203ENST00000563798 NXPE2Q96DL1 559 aa17.48■□□□□ 0.39
VPS9D1-203ENST00000563798 CALN1Q9BXU9 219 aa17.48■□□□□ 0.39
VPS9D1-203ENST00000563798 TTYH3Q9C0H2 523 aa17.48■□□□□ 0.39
VPS9D1-203ENST00000563798 UCKL1Q9NWZ5 548 aa17.48■□□□□ 0.39
VPS9D1-203ENST00000563798 NBEAQ8NFP9 2946 aa17.48■□□□□ 0.39
VPS9D1-203ENST00000563798 BAHCC1Q9P281 2608 aa17.48■□□□□ 0.39
VPS9D1-203ENST00000563798 TRPM6Q9BX84 2022 aa17.47■□□□□ 0.39
VPS9D1-203ENST00000563798 ANKRD62A6NC57 917 aa17.47■□□□□ 0.39
VPS9D1-203ENST00000563798 NEMP2A6NFY4 417 aa17.47■□□□□ 0.39
VPS9D1-203ENST00000563798 KRIT1O00522 736 aa17.47■□□□□ 0.39
VPS9D1-203ENST00000563798 SCAMP1O15126 338 aa17.47■□□□□ 0.39
VPS9D1-203ENST00000563798 CKMT1AP12532 417 aa17.47■□□□□ 0.39
VPS9D1-203ENST00000563798 ATP1A3P13637 1013 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms