RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 MYBL1P10243 752 aa17.13■□□□□ 0.33
CLK3-210ENST00000563112 SKILP12757 684 aa17.13■□□□□ 0.33
CLK3-210ENST00000563112 ADRB3P13945 408 aa17.13■□□□□ 0.33
CLK3-210ENST00000563112 UBASH3AP57075 661 aa17.13■□□□□ 0.33
CLK3-210ENST00000563112 MYLK3Q32MK0 819 aa17.13■□□□□ 0.33
CLK3-210ENST00000563112 PARP15Q460N3 678 aa17.13■□□□□ 0.33
CLK3-210ENST00000563112 INO80DQ53TQ3 878 aaPredicted RBP17.13■□□□□ 0.33
CLK3-210ENST00000563112 LEKR1Q6ZMV7 388 aa17.13■□□□□ 0.33
CLK3-210ENST00000563112 VPS36Q86VN1 386 aa17.13■□□□□ 0.33
CLK3-210ENST00000563112 GATAD2AQ86YP4 633 aa17.13■□□□□ 0.33
CLK3-210ENST00000563112 UMODL1-AS1Q8N2C9 162 aa17.13■□□□□ 0.33
CLK3-210ENST00000563112 ZNF653Q96CK0 615 aa17.13■□□□□ 0.33
CLK3-210ENST00000563112 IQCDQ96DY2 449 aa17.13■□□□□ 0.33
CLK3-210ENST00000563112 NCAPGQ9BPX3 1015 aa17.13■□□□□ 0.33
CLK3-210ENST00000563112 MRPL47Q9HD33 250 aaKnown RBP17.13■□□□□ 0.33
CLK3-210ENST00000563112 AP4E1Q9UPM8 1137 aa17.13■□□□□ 0.33
CLK3-210ENST00000563112 BZW2Q9Y6E2 419 aaKnown RBP17.13■□□□□ 0.33
CLK3-210ENST00000563112 FRYQ5TBA9 3013 aa17.12■□□□□ 0.33
CLK3-210ENST00000563112 RNF103O00237 685 aa17.12■□□□□ 0.33
CLK3-210ENST00000563112 DAPK3O43293 454 aa17.12■□□□□ 0.33
CLK3-210ENST00000563112 PRPSAP2O60256 369 aa17.12■□□□□ 0.33
CLK3-210ENST00000563112 IGSF6O95976 241 aa17.12■□□□□ 0.33
CLK3-210ENST00000563112 PRLRP16471 622 aa17.12■□□□□ 0.33
CLK3-210ENST00000563112 HNRNPA2B1P22626 353 aaKnown RBP17.12■□□□□ 0.33
CLK3-210ENST00000563112 RXRGP48443 463 aa17.12■□□□□ 0.33
CLK3-210ENST00000563112 RPS21P63220 83 aaKnown RBP17.12■□□□□ 0.33
CLK3-210ENST00000563112 ZNF284Q2VY69 593 aa17.12■□□□□ 0.33
CLK3-210ENST00000563112 TDRD12Q587J7 1177 aaKnown RBP17.12■□□□□ 0.33
CLK3-210ENST00000563112 ZNF805Q5CZA5 627 aa17.12■□□□□ 0.33
CLK3-210ENST00000563112 ERMARDQ5T6L9 678 aa17.12■□□□□ 0.33
CLK3-210ENST00000563112 E4F1Q66K89 784 aaPredicted RBP17.12■□□□□ 0.33
CLK3-210ENST00000563112 KIAA1161Q6NSJ0 714 aa17.12■□□□□ 0.33
CLK3-210ENST00000563112 ZSCAN30Q86W11 494 aa17.12■□□□□ 0.33
CLK3-210ENST00000563112 FAM174AQ8TBP5 190 aa17.12■□□□□ 0.33
CLK3-210ENST00000563112 SAP25Q8TEE9 199 aa17.12■□□□□ 0.33
CLK3-210ENST00000563112 FNIP1Q8TF40 1166 aa17.12■□□□□ 0.33
CLK3-210ENST00000563112 GATA6Q92908 595 aa17.12■□□□□ 0.33
CLK3-210ENST00000563112 RAB7BQ96AH8 199 aa17.12■□□□□ 0.33
CLK3-210ENST00000563112 GDAP1L1Q96MZ0 367 aa17.12■□□□□ 0.33
CLK3-210ENST00000563112 MYOCQ99972 504 aa17.12■□□□□ 0.33
CLK3-210ENST00000563112 OSBPL1AQ9BXW6 950 aa17.12■□□□□ 0.33
CLK3-210ENST00000563112 DHX35Q9H5Z1 703 aaKnown RBP17.12■□□□□ 0.33
CLK3-210ENST00000563112 NOL6Q9H6R4 1146 aaKnown RBP17.12■□□□□ 0.33
CLK3-210ENST00000563112 PCSK1NQ9UHG2 260 aa17.12■□□□□ 0.33
CLK3-210ENST00000563112 A0A1W2PQJ5 194 aa17.11■□□□□ 0.33
CLK3-210ENST00000563112 C16orf96A6NNT2 1141 aa17.11■□□□□ 0.33
CLK3-210ENST00000563112 EEF2KO00418 725 aaKnown RBP17.11■□□□□ 0.33
CLK3-210ENST00000563112 NEMP1O14524 444 aa17.11■□□□□ 0.33
CLK3-210ENST00000563112 TSPAN6O43657 245 aa17.11■□□□□ 0.33
CLK3-210ENST00000563112 AP1G1O43747 822 aa17.11■□□□□ 0.33
CLK3-210ENST00000563112 TMCC1O94876 653 aa17.11■□□□□ 0.33
CLK3-210ENST00000563112 THEGLP0DJG4 465 aa17.11■□□□□ 0.33
CLK3-210ENST00000563112 EPHA8P29322 1005 aaPredicted RBP17.11■□□□□ 0.33
CLK3-210ENST00000563112 RHOAP61586 193 aa17.11■□□□□ 0.33
CLK3-210ENST00000563112 MAPK8IP2Q13387 824 aaPredicted RBP17.11■□□□□ 0.33
CLK3-210ENST00000563112 SERINC3Q13530 473 aa17.11■□□□□ 0.33
CLK3-210ENST00000563112 SHBQ15464 509 aa17.11■□□□□ 0.33
CLK3-210ENST00000563112 PARS2Q7L3T8 475 aaKnown RBP17.11■□□□□ 0.33
CLK3-210ENST00000563112 SPATS2Q86XZ4 545 aaKnown RBP17.11■□□□□ 0.33
CLK3-210ENST00000563112 DNAAF5Q86Y56 855 aa17.11■□□□□ 0.33
CLK3-210ENST00000563112 TMEM145Q8NBT3 493 aa17.11■□□□□ 0.33
CLK3-210ENST00000563112 OR6K2Q8NGY2 324 aa17.11■□□□□ 0.33
CLK3-210ENST00000563112 SYN2Q92777 582 aaPredicted RBP17.11■□□□□ 0.33
CLK3-210ENST00000563112 ARHGEF26Q96DR7 871 aa17.11■□□□□ 0.33
CLK3-210ENST00000563112 HMCESQ96FZ2 354 aa17.11■□□□□ 0.33
CLK3-210ENST00000563112 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.11■□□□□ 0.33
CLK3-210ENST00000563112 SLC17A9Q9BYT1 436 aa17.11■□□□□ 0.33
CLK3-210ENST00000563112 GPATCH2LQ9NWQ4 482 aa17.11■□□□□ 0.33
CLK3-210ENST00000563112 MYO1AQ9UBC5 1043 aa17.11■□□□□ 0.33
CLK3-210ENST00000563112 ZFR2Q9UPR6 939 aaKnown RBP17.11■□□□□ 0.33
CLK3-210ENST00000563112 CA5BQ9Y2D0 317 aa17.11■□□□□ 0.33
CLK3-210ENST00000563112 FADS3Q9Y5Q0 445 aa17.11■□□□□ 0.33
CLK3-210ENST00000563112 TRPM6Q9BX84 2022 aa17.11■□□□□ 0.33
CLK3-210ENST00000563112 LDOC1O95751 146 aaPredicted RBP17.1■□□□□ 0.33
CLK3-210ENST00000563112 UGT2B4P06133 528 aa17.1■□□□□ 0.33
CLK3-210ENST00000563112 GKP32189 559 aa17.1■□□□□ 0.33
CLK3-210ENST00000563112 ZNF135P52742 658 aaPredicted RBP17.1■□□□□ 0.33
CLK3-210ENST00000563112 NDST2P52849 883 aa17.1■□□□□ 0.33
CLK3-210ENST00000563112 BNIP3Q12983 259 aa17.1■□□□□ 0.33
CLK3-210ENST00000563112 SGCGQ13326 291 aa17.1■□□□□ 0.33
CLK3-210ENST00000563112 SKOR2Q2VWA4 1001 aaPredicted RBP17.1■□□□□ 0.33
CLK3-210ENST00000563112 TMEM259Q4ZIN3 620 aa17.1■□□□□ 0.33
CLK3-210ENST00000563112 CCDC157Q569K6 752 aa17.1■□□□□ 0.33
CLK3-210ENST00000563112 ATXN7L2Q5T6C5 722 aaPredicted RBP17.1■□□□□ 0.33
CLK3-210ENST00000563112 SEL1L3Q68CR1 1132 aa17.1■□□□□ 0.33
CLK3-210ENST00000563112 GDPD4Q6W3E5 623 aa17.1■□□□□ 0.33
CLK3-210ENST00000563112 PSTKQ8IV42 348 aaKnown RBP17.1■□□□□ 0.33
CLK3-210ENST00000563112 EID2Q8N6I1 236 aa17.1■□□□□ 0.33
CLK3-210ENST00000563112 KDF1Q8NAX2 398 aaPredicted RBP17.1■□□□□ 0.33
CLK3-210ENST00000563112 CPLX3Q8WVH0 158 aa17.1■□□□□ 0.33
CLK3-210ENST00000563112 KLHL32Q96NJ5 620 aa17.1■□□□□ 0.33
CLK3-210ENST00000563112 TMEM121BQ9BXQ6 578 aaPredicted RBP17.1■□□□□ 0.33
CLK3-210ENST00000563112 ISCUQ9H1K1 167 aa17.1■□□□□ 0.33
CLK3-210ENST00000563112 TOR4AQ9NXH8 423 aa17.1■□□□□ 0.33
CLK3-210ENST00000563112 UBA2Q9UBT2 640 aaPredicted RBP17.1■□□□□ 0.33
CLK3-210ENST00000563112 HS3ST3A1Q9Y663 406 aa17.1■□□□□ 0.33
CLK3-210ENST00000563112 ARHGAP42A6NI28 874 aa17.09■□□□□ 0.33
CLK3-210ENST00000563112 PAK4O96013 591 aaPredicted RBP17.09■□□□□ 0.33
CLK3-210ENST00000563112 TPM3P06753 285 aa17.09■□□□□ 0.33
CLK3-210ENST00000563112 MIPP30301 263 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms