RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 SLC25A41Q8N5S1 370 aa21.56■■□□□ 1.04
CLN3-209ENST00000561689 PPP2R3CQ969Q6 453 aa21.56■■□□□ 1.04
CLN3-209ENST00000561689 FCRL3Q96P31 734 aaPredicted RBP21.56■■□□□ 1.04
CLN3-209ENST00000561689 LRRC3BQ96PB8 259 aa21.56■■□□□ 1.04
CLN3-209ENST00000561689 MGME1Q9BQP7 344 aa21.56■■□□□ 1.04
CLN3-209ENST00000561689 DHRS4Q9BTZ2 278 aa21.56■■□□□ 1.04
CLN3-209ENST00000561689 IL22Q9GZX6 179 aa21.56■■□□□ 1.04
CLN3-209ENST00000561689 CHRAC1Q9NRG0 131 aa21.56■■□□□ 1.04
CLN3-209ENST00000561689 PSMC3IPQ9P2W1 217 aaPredicted RBP21.56■■□□□ 1.04
CLN3-209ENST00000561689 FETUBQ9UGM5 382 aa21.56■■□□□ 1.04
CLN3-209ENST00000561689 RPS6KL1Q9Y6S9 549 aa21.56■■□□□ 1.04
CLN3-209ENST00000561689 AP3B1O00203 1094 aa21.56■■□□□ 1.04
CLN3-209ENST00000561689 POLBP06746 335 aa21.56■■□□□ 1.04
CLN3-209ENST00000561689 HYAL1Q12794 435 aa21.56■■□□□ 1.04
CLN3-209ENST00000561689 POU6F1Q14863 301 aa21.56■■□□□ 1.04
CLN3-209ENST00000561689 TCEAL5Q5H9L2 206 aa21.56■■□□□ 1.04
CLN3-209ENST00000561689 RIBC1Q8N443 379 aaPredicted RBP21.56■■□□□ 1.04
CLN3-209ENST00000561689 PPM1NQ8N819 430 aa21.56■■□□□ 1.04
CLN3-209ENST00000561689 FIBINQ8TAL6 211 aa21.56■■□□□ 1.04
CLN3-209ENST00000561689 DCAKDQ8WVC6 231 aa21.56■■□□□ 1.04
CLN3-209ENST00000561689 TADA1Q96BN2 335 aa21.56■■□□□ 1.04
CLN3-209ENST00000561689 PPCSQ9HAB8 311 aa21.56■■□□□ 1.04
CLN3-209ENST00000561689 PPANQ9NQ55 473 aaKnown RBP21.56■■□□□ 1.04
CLN3-209ENST00000561689 DZANK1Q9NVP4 752 aa21.56■■□□□ 1.04
CLN3-209ENST00000561689 MOCS1Q9NZB8 636 aa21.56■■□□□ 1.04
CLN3-209ENST00000561689 IL1RAPL1Q9NZN1 696 aa21.56■■□□□ 1.04
CLN3-209ENST00000561689 CHD5Q8TDI0 1954 aa21.55■■□□□ 1.04
CLN3-209ENST00000561689 CCDC78A2IDD5 438 aa21.55■■□□□ 1.04
CLN3-209ENST00000561689 NEDD8-MDP1E9PL57 170 aa21.55■■□□□ 1.04
CLN3-209ENST00000561689 PAPLNO95428 1278 aa21.55■■□□□ 1.04
CLN3-209ENST00000561689 SCNN1BP51168 640 aa21.55■■□□□ 1.04
CLN3-209ENST00000561689 KDM7AQ6ZMT4 941 aa21.55■■□□□ 1.04
CLN3-209ENST00000561689 BBS2Q9BXC9 721 aa21.55■■□□□ 1.04
CLN3-209ENST00000561689 NOD2Q9HC29 1040 aa21.55■■□□□ 1.04
CLN3-209ENST00000561689 KIAA1522Q9P206 1035 aaPredicted RBP21.55■■□□□ 1.04
CLN3-209ENST00000561689 TNRC18O15417 2968 aaPredicted RBP21.55■■□□□ 1.04
CLN3-209ENST00000561689 C5orf42Q9H799 3197 aa21.55■■□□□ 1.04
CLN3-209ENST00000561689 TMCC1O94876 653 aa21.54■■□□□ 1.04
CLN3-209ENST00000561689 MT-CO1P00395 513 aa21.54■■□□□ 1.04
CLN3-209ENST00000561689 CREB1P16220 341 aa21.54■■□□□ 1.04
CLN3-209ENST00000561689 FSHRP23945 695 aa21.54■■□□□ 1.04
CLN3-209ENST00000561689 ATP5DP30049 168 aa21.54■■□□□ 1.04
CLN3-209ENST00000561689 VIPR2P41587 438 aa21.54■■□□□ 1.04
CLN3-209ENST00000561689 PPP2R2AP63151 447 aa21.54■■□□□ 1.04
CLN3-209ENST00000561689 RNF43Q68DV7 783 aa21.54■■□□□ 1.04
CLN3-209ENST00000561689 ADGRD1Q6QNK2 874 aa21.54■■□□□ 1.04
CLN3-209ENST00000561689 NPAS3Q8IXF0 933 aa21.54■■□□□ 1.04
CLN3-209ENST00000561689 DCAF4L2Q8NA75 395 aa21.54■■□□□ 1.04
CLN3-209ENST00000561689 ST13P5Q8NFI4 369 aaPredicted RBP21.54■■□□□ 1.04
CLN3-209ENST00000561689 SLC44A1Q8WWI5 657 aa21.54■■□□□ 1.04
CLN3-209ENST00000561689 IRF7Q92985 503 aa21.54■■□□□ 1.04
CLN3-209ENST00000561689 ZNF669Q96BR6 464 aaPredicted RBP21.54■■□□□ 1.04
CLN3-209ENST00000561689 MFSD3Q96ES6 412 aa21.54■■□□□ 1.04
CLN3-209ENST00000561689 TBC1D14Q9P2M4 693 aa21.54■■□□□ 1.04
CLN3-209ENST00000561689 UGT1A9O60656 530 aa21.54■■□□□ 1.04
CLN3-209ENST00000561689 FAM155BO75949 473 aa21.54■■□□□ 1.04
CLN3-209ENST00000561689 ALDH1A2O94788 518 aa21.54■■□□□ 1.04
CLN3-209ENST00000561689 LY6G5CQ5SRR4 150 aa21.54■■□□□ 1.04
CLN3-209ENST00000561689 ALG1LQ6GMV1 187 aa21.54■■□□□ 1.04
CLN3-209ENST00000561689 TMEM135Q86UB9 458 aa21.54■■□□□ 1.04
CLN3-209ENST00000561689 LRRC6Q86X45 466 aa21.54■■□□□ 1.04
CLN3-209ENST00000561689 SRRM1Q8IYB3 904 aaKnown RBP21.54■■□□□ 1.04
CLN3-209ENST00000561689 ADGRG2Q8IZP9 1017 aa21.54■■□□□ 1.04
CLN3-209ENST00000561689 CELF5Q8N6W0 485 aaKnown RBP21.54■■□□□ 1.04
CLN3-209ENST00000561689 RSPRY1Q96DX4 576 aa21.54■■□□□ 1.04
CLN3-209ENST00000561689 NSMCE3Q96MG7 304 aa21.54■■□□□ 1.04
CLN3-209ENST00000561689 C2orf49Q9BVC5 232 aaPredicted RBP21.54■■□□□ 1.04
CLN3-209ENST00000561689 ZMYND15Q9H091 742 aa21.54■■□□□ 1.04
CLN3-209ENST00000561689 NSUN3Q9H649 340 aaKnown RBP21.54■■□□□ 1.04
CLN3-209ENST00000561689 UGT1A7Q9HAW7 530 aa21.54■■□□□ 1.04
CLN3-209ENST00000561689 UGT1A10Q9HAW8 530 aa21.54■■□□□ 1.04
CLN3-209ENST00000561689 UGT1A8Q9HAW9 530 aa21.54■■□□□ 1.04
CLN3-209ENST00000561689 SPHK2Q9NRA0 654 aa21.54■■□□□ 1.04
CLN3-209ENST00000561689 ABCB8Q9NUT2 735 aa21.54■■□□□ 1.04
CLN3-209ENST00000561689 HAUS2Q9NVX0 235 aa21.54■■□□□ 1.04
CLN3-209ENST00000561689 FCF1Q9Y324 198 aaKnown RBP21.54■■□□□ 1.04
CLN3-209ENST00000561689 IKBKGQ9Y6K9 419 aa21.54■■□□□ 1.04
CLN3-209ENST00000561689 MYO9BQ13459 2157 aa21.53■■□□□ 1.04
CLN3-209ENST00000561689 MAGEB16A2A368 324 aa21.53■■□□□ 1.04
CLN3-209ENST00000561689 FAM159BA6NKW6 160 aa21.53■■□□□ 1.04
CLN3-209ENST00000561689 K7ERQ8 282 aa21.53■■□□□ 1.04
CLN3-209ENST00000561689 PENKP01210 267 aaPredicted RBP21.53■■□□□ 1.04
CLN3-209ENST00000561689 INHBAP08476 426 aa21.53■■□□□ 1.04
CLN3-209ENST00000561689 KRT15P19012 456 aa21.53■■□□□ 1.04
CLN3-209ENST00000561689 ANKRD20A4Q4UJ75 823 aa21.53■■□□□ 1.04
CLN3-209ENST00000561689 FAM78AQ5JUQ0 283 aa21.53■■□□□ 1.04
CLN3-209ENST00000561689 TTC19Q6DKK2 380 aaPredicted RBP21.53■■□□□ 1.04
CLN3-209ENST00000561689 GET4Q7L5D6 327 aaPredicted RBP21.53■■□□□ 1.04
CLN3-209ENST00000561689 FGF13Q92913 245 aa21.53■■□□□ 1.04
CLN3-209ENST00000561689 ZNF778Q96MU6 729 aa21.53■■□□□ 1.04
CLN3-209ENST00000561689 PRDM4Q9UKN5 801 aa21.53■■□□□ 1.04
CLN3-209ENST00000561689 INTS6Q9UL03 887 aaKnown RBP21.53■■□□□ 1.04
CLN3-209ENST00000561689 SOX13Q9UN79 622 aa21.53■■□□□ 1.04
CLN3-209ENST00000561689 FAM237BA0A1B0GVD1 139 aa21.52■■□□□ 1.04
CLN3-209ENST00000561689 SERPINF2P08697 491 aa21.52■■□□□ 1.04
CLN3-209ENST00000561689 TCF3P15923 654 aa21.52■■□□□ 1.04
CLN3-209ENST00000561689 HLA-FP30511 346 aa21.52■■□□□ 1.04
CLN3-209ENST00000561689 RASA2Q15283 850 aa21.52■■□□□ 1.04
CLN3-209ENST00000561689 SLC1A5Q15758 541 aa21.52■■□□□ 1.04
CLN3-209ENST00000561689 SPANXN3Q5MJ09 141 aa21.52■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms