RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 SRLQ86TD4 932 aa4.72□□□□□ -1.65
VPS13C-208ENST00000559119 CCDC117Q8IWD4 279 aaPredicted RBP4.72□□□□□ -1.65
VPS13C-208ENST00000559119 PTGR2Q8N8N7 351 aaPredicted RBP4.72□□□□□ -1.65
VPS13C-208ENST00000559119 RFWD2Q8NHY2 731 aa4.72□□□□□ -1.65
VPS13C-208ENST00000559119 SECTM1Q8WVN6 248 aa4.72□□□□□ -1.65
VPS13C-208ENST00000559119 EID2BQ96D98 161 aa4.72□□□□□ -1.65
VPS13C-208ENST00000559119 MTBPQ96DY7 904 aa4.72□□□□□ -1.65
VPS13C-208ENST00000559119 MSTO1Q9BUK6 570 aa4.72□□□□□ -1.65
VPS13C-208ENST00000559119 ARFGAP3Q9NP61 516 aa4.72□□□□□ -1.65
VPS13C-208ENST00000559119 GRHL1Q9NZI5 618 aa4.72□□□□□ -1.65
VPS13C-208ENST00000559119 CDC23Q9UJX2 597 aa4.72□□□□□ -1.65
VPS13C-208ENST00000559119 LGALS16A8MUM7 142 aa4.71□□□□□ -1.66
VPS13C-208ENST00000559119 SERPINB2P05120 415 aa4.71□□□□□ -1.66
VPS13C-208ENST00000559119 CHN1P15882 459 aa4.71□□□□□ -1.66
VPS13C-208ENST00000559119 DGKAP23743 735 aa4.71□□□□□ -1.66
VPS13C-208ENST00000559119 FMO4P31512 558 aa4.71□□□□□ -1.66
VPS13C-208ENST00000559119 PPM1AP35813 382 aa4.71□□□□□ -1.66
VPS13C-208ENST00000559119 DHX34Q14147 1143 aaKnown RBP4.71□□□□□ -1.66
VPS13C-208ENST00000559119 DCAF6Q58WW2 860 aa4.71□□□□□ -1.66
VPS13C-208ENST00000559119 IL31Q6EBC2 164 aa4.71□□□□□ -1.66
VPS13C-208ENST00000559119 KLHL24Q6TFL4 600 aa4.71□□□□□ -1.66
VPS13C-208ENST00000559119 GDPD4Q6W3E5 623 aa4.71□□□□□ -1.66
VPS13C-208ENST00000559119 ZNF527Q8NB42 609 aa4.71□□□□□ -1.66
VPS13C-208ENST00000559119 SCAMP5Q8TAC9 235 aa4.71□□□□□ -1.66
VPS13C-208ENST00000559119 SCMH1Q96GD3 660 aa4.71□□□□□ -1.66
VPS13C-208ENST00000559119 OR1F2PQ96R84 312 aa4.71□□□□□ -1.66
VPS13C-208ENST00000559119 EVA1AQ9H8M9 152 aa4.71□□□□□ -1.66
VPS13C-208ENST00000559119 FBXO40Q9UH90 709 aa4.71□□□□□ -1.66
VPS13C-208ENST00000559119 WDR81Q562E7 1941 aa4.71□□□□□ -1.66
VPS13C-208ENST00000559119 TIMM23O14925 209 aa4.7□□□□□ -1.66
VPS13C-208ENST00000559119 XPNPEP2O43895 674 aa4.7□□□□□ -1.66
VPS13C-208ENST00000559119 IL1AP01583 271 aa4.7□□□□□ -1.66
VPS13C-208ENST00000559119 DHRS4L1P0CG22 281 aa4.7□□□□□ -1.66
VPS13C-208ENST00000559119 AVPR2P30518 371 aa4.7□□□□□ -1.66
VPS13C-208ENST00000559119 DCTDP32321 178 aa4.7□□□□□ -1.66
VPS13C-208ENST00000559119 CALCRLQ16602 461 aa4.7□□□□□ -1.66
VPS13C-208ENST00000559119 LRRC24Q50LG9 513 aa4.7□□□□□ -1.66
VPS13C-208ENST00000559119 RUNDC3AQ59EK9 446 aa4.7□□□□□ -1.66
VPS13C-208ENST00000559119 TUBA1AQ71U36 451 aa4.7□□□□□ -1.66
VPS13C-208ENST00000559119 SMIM29Q86T20 159 aa4.7□□□□□ -1.66
VPS13C-208ENST00000559119 FAM186BQ8IYM0 893 aa4.7□□□□□ -1.66
VPS13C-208ENST00000559119 MAB21L3Q8N8X9 362 aa4.7□□□□□ -1.66
VPS13C-208ENST00000559119 SORCS1Q8WY21 1168 aa4.7□□□□□ -1.66
VPS13C-208ENST00000559119 FEM1CQ96JP0 617 aa4.7□□□□□ -1.66
VPS13C-208ENST00000559119 ZNF385AQ96PM9 386 aaKnown RBP4.7□□□□□ -1.66
VPS13C-208ENST00000559119 TUBA1CQ9BQE3 449 aa4.7□□□□□ -1.66
VPS13C-208ENST00000559119 MVB12BQ9H7P6 319 aa4.7□□□□□ -1.66
VPS13C-208ENST00000559119 PRDM8Q9NQV8 689 aa4.7□□□□□ -1.66
VPS13C-208ENST00000559119 CHST12Q9NRB3 414 aa4.7□□□□□ -1.66
VPS13C-208ENST00000559119 THAP1Q9NVV9 213 aa4.7□□□□□ -1.66
VPS13C-208ENST00000559119 CHPF2Q9P2E5 772 aa4.7□□□□□ -1.66
VPS13C-208ENST00000559119 OR6C68A6NDL8 312 aa4.69□□□□□ -1.66
VPS13C-208ENST00000559119 CYP21A2P08686 494 aa4.69□□□□□ -1.66
VPS13C-208ENST00000559119 ANOS1P23352 680 aa4.69□□□□□ -1.66
VPS13C-208ENST00000559119 NEK3P51956 506 aa4.69□□□□□ -1.66
VPS13C-208ENST00000559119 TROAPQ12815 778 aa4.69□□□□□ -1.66
VPS13C-208ENST00000559119 FSIP1Q8NA03 581 aa4.69□□□□□ -1.66
VPS13C-208ENST00000559119 OTUD7AQ8TE49 926 aaPredicted RBP4.69□□□□□ -1.66
VPS13C-208ENST00000559119 TRIB2Q92519 343 aa4.69□□□□□ -1.66
VPS13C-208ENST00000559119 PABPC3Q9H361 631 aaKnown RBP4.69□□□□□ -1.66
VPS13C-208ENST00000559119 CXorf56Q9H5V9 222 aa4.69□□□□□ -1.66
VPS13C-208ENST00000559119 UBTD1Q9HAC8 227 aa4.69□□□□□ -1.66
VPS13C-208ENST00000559119 NOTCH3Q9UM47 2321 aa4.68□□□□□ -1.66
VPS13C-208ENST00000559119 FAM157AC9JC47 383 aa4.68□□□□□ -1.66
VPS13C-208ENST00000559119 NPIPB11E5RHQ5 1161 aa4.68□□□□□ -1.66
VPS13C-208ENST00000559119 PARNO95453 639 aaKnown RBP4.68□□□□□ -1.66
VPS13C-208ENST00000559119 VNN2O95498 520 aa4.68□□□□□ -1.66
VPS13C-208ENST00000559119 IGHV4-30-4P0DP06 118 aa4.68□□□□□ -1.66
VPS13C-208ENST00000559119 ACP5P13686 325 aa4.68□□□□□ -1.66
VPS13C-208ENST00000559119 GM2AP17900 193 aa4.68□□□□□ -1.66
VPS13C-208ENST00000559119 MYF6P23409 242 aa4.68□□□□□ -1.66
VPS13C-208ENST00000559119 PHEXP78562 749 aa4.68□□□□□ -1.66
VPS13C-208ENST00000559119 PDCLQ13371 301 aa4.68□□□□□ -1.66
VPS13C-208ENST00000559119 LPIN1Q14693 890 aa4.68□□□□□ -1.66
VPS13C-208ENST00000559119 PFKFB4Q16877 469 aa4.68□□□□□ -1.66
VPS13C-208ENST00000559119 PGBD2Q6P3X8 592 aa4.68□□□□□ -1.66
VPS13C-208ENST00000559119 TRMT1LQ7Z2T5 733 aaKnown RBP4.68□□□□□ -1.66
VPS13C-208ENST00000559119 AADATQ8N5Z0 425 aa4.68□□□□□ -1.66
VPS13C-208ENST00000559119 RASSF8Q8NHQ8 419 aa4.68□□□□□ -1.66
VPS13C-208ENST00000559119 CCDC136Q96JN2 1154 aa4.68□□□□□ -1.66
VPS13C-208ENST00000559119 TRAPPC9Q96Q05 1148 aa4.68□□□□□ -1.66
VPS13C-208ENST00000559119 MMP28Q9H239 520 aa4.68□□□□□ -1.66
VPS13C-208ENST00000559119 WDR6Q9NNW5 1121 aaKnown RBP4.68□□□□□ -1.66
VPS13C-208ENST00000559119 KCND3Q9UK17 655 aa4.68□□□□□ -1.66
VPS13C-208ENST00000559119 MORC2Q9Y6X9 1032 aaPredicted RBP4.68□□□□□ -1.66
VPS13C-208ENST00000559119 IGHV4OR15-8A0A075B7B6 117 aa4.67□□□□□ -1.66
VPS13C-208ENST00000559119 HNRNPCL2B2RXH8 293 aa4.67□□□□□ -1.66
VPS13C-208ENST00000559119 SKAP2O75563 359 aaPredicted RBP4.67□□□□□ -1.66
VPS13C-208ENST00000559119 ARSAP15289 507 aa4.67□□□□□ -1.66
VPS13C-208ENST00000559119 SSTR2P30874 369 aa4.67□□□□□ -1.66
VPS13C-208ENST00000559119 GNALP38405 381 aa4.67□□□□□ -1.66
VPS13C-208ENST00000559119 GLIPR1P48060 266 aa4.67□□□□□ -1.66
VPS13C-208ENST00000559119 CRIP2P52943 208 aaPredicted RBP4.67□□□□□ -1.66
VPS13C-208ENST00000559119 KRTAP10-12P60413 245 aa4.67□□□□□ -1.66
VPS13C-208ENST00000559119 FAM27E3Q08E93 113 aa4.67□□□□□ -1.66
VPS13C-208ENST00000559119 DMP1Q13316 513 aaPredicted RBP4.67□□□□□ -1.66
VPS13C-208ENST00000559119 CAPSQ13938 189 aa4.67□□□□□ -1.66
VPS13C-208ENST00000559119 RBBP5Q15291 538 aaKnown RBP4.67□□□□□ -1.66
VPS13C-208ENST00000559119 CCDC6Q16204 474 aa4.67□□□□□ -1.66
VPS13C-208ENST00000559119 RRAGAQ7L523 313 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms