RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 TDP1Q9NUW8 608 aa12.65□□□□□ -0.38
SHMT2-233ENST00000557529 INTS9Q9NV88 658 aaKnown RBP12.65□□□□□ -0.38
SHMT2-233ENST00000557529 ZFATQ9P243 1243 aa12.65□□□□□ -0.38
SHMT2-233ENST00000557529 TBC1D14Q9P2M4 693 aa12.65□□□□□ -0.38
SHMT2-233ENST00000557529 CHD5Q8TDI0 1954 aa12.64□□□□□ -0.39
SHMT2-233ENST00000557529 CXorf51AA0A1B0GTR3 108 aa12.64□□□□□ -0.39
SHMT2-233ENST00000557529 ZCWPW2A0A1B0GU75 182 aa12.64□□□□□ -0.39
SHMT2-233ENST00000557529 FAM47DPA6NHR8 397 aa12.64□□□□□ -0.39
SHMT2-233ENST00000557529 PIAS1O75925 651 aa12.64□□□□□ -0.39
SHMT2-233ENST00000557529 FAM155BO75949 473 aa12.64□□□□□ -0.39
SHMT2-233ENST00000557529 PAPLNO95428 1278 aa12.64□□□□□ -0.39
SHMT2-233ENST00000557529 CREB1P16220 341 aa12.64□□□□□ -0.39
SHMT2-233ENST00000557529 HLA-DPA1P20036 260 aa12.64□□□□□ -0.39
SHMT2-233ENST00000557529 SERPINH1P50454 418 aaKnown RBP12.64□□□□□ -0.39
SHMT2-233ENST00000557529 SLC12A1Q13621 1099 aa12.64□□□□□ -0.39
SHMT2-233ENST00000557529 LAMB3Q13751 1172 aa12.64□□□□□ -0.39
SHMT2-233ENST00000557529 SLC5A9Q2M3M2 681 aa12.64□□□□□ -0.39
SHMT2-233ENST00000557529 INO80DQ53TQ3 878 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-233ENST00000557529 PPP2R2DQ66LE6 453 aa12.64□□□□□ -0.39
SHMT2-233ENST00000557529 TTC19Q6DKK2 380 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-233ENST00000557529 RBM23Q86U06 439 aaKnown RBP12.64□□□□□ -0.39
SHMT2-233ENST00000557529 RASSF3Q86WH2 238 aa12.64□□□□□ -0.39
SHMT2-233ENST00000557529 ZNF557Q8N988 423 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-233ENST00000557529 FIBINQ8TAL6 211 aa12.64□□□□□ -0.39
SHMT2-233ENST00000557529 SMG7Q92540 1137 aaKnown RBP12.64□□□□□ -0.39
SHMT2-233ENST00000557529 USP13Q92995 863 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-233ENST00000557529 IFT43Q96FT9 208 aa12.64□□□□□ -0.39
SHMT2-233ENST00000557529 SGSM3Q96HU1 749 aa12.64□□□□□ -0.39
SHMT2-233ENST00000557529 RANBP9Q96S59 729 aa12.64□□□□□ -0.39
SHMT2-233ENST00000557529 CDCA3Q99618 268 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-233ENST00000557529 C2orf49Q9BVC5 232 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-233ENST00000557529 PBX4Q9BYU1 374 aa12.64□□□□□ -0.39
SHMT2-233ENST00000557529 SMG9Q9H0W8 520 aaKnown RBP12.64□□□□□ -0.39
SHMT2-233ENST00000557529 NKX2-4Q9H2Z4 354 aa12.64□□□□□ -0.39
SHMT2-233ENST00000557529 CHRAC1Q9NRG0 131 aa12.64□□□□□ -0.39
SHMT2-233ENST00000557529 NSMCE4AQ9NXX6 385 aa12.64□□□□□ -0.39
SHMT2-233ENST00000557529 KIAA1522Q9P206 1035 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-233ENST00000557529 TXNDC16Q9P2K2 825 aa12.64□□□□□ -0.39
SHMT2-233ENST00000557529 PRKAG3Q9UGI9 489 aa12.64□□□□□ -0.39
SHMT2-233ENST00000557529 MRPS23Q9Y3D9 190 aaKnown RBP12.64□□□□□ -0.39
SHMT2-233ENST00000557529 TCAF1Q9Y4C2 921 aa12.64□□□□□ -0.39
SHMT2-233ENST00000557529 OR51B4Q9Y5P0 310 aa12.64□□□□□ -0.39
SHMT2-233ENST00000557529 LOC285095A0A1B0GVY8 99 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 HEATR9A2RTY3 570 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 FOXO6A8MYZ6 492 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 MUSKO15146 869 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 ZMPSTE24O75844 475 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 FGF1P05230 155 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 KRT4P19013 534 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 PAMP19021 973 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 GLDCP23378 1020 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 MZF1P28698 734 aaPredicted RBP12.63□□□□□ -0.39
SHMT2-233ENST00000557529 WEE1P30291 646 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 PBX2P40425 430 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 CSKP41240 450 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 NTHL1P78549 312 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 ARF5P84085 180 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 CDK18Q07002 472 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 DNAJC3Q13217 504 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 POU6F1Q14863 301 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 CYTH1Q15438 398 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 SLC1A5Q15758 541 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 FSCBQ5H9T9 825 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 RALGPS1Q5JS13 557 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 ZNF697Q5TEC3 545 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 FYB2Q5VWT5 728 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 PDPK2PQ6A1A2 396 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 RETSATQ6NUM9 610 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 CES3Q6UWW8 571 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 NLRP9Q7RTR0 991 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 ADGRD2Q7Z7M1 963 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 METTL3Q86U44 580 aaKnown RBP12.63□□□□□ -0.39
SHMT2-233ENST00000557529 KIAA1958Q8N8K9 716 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 PPP2R3CQ969Q6 453 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 ACDQ96AP0 544 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 OTUB2Q96DC9 234 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 ALG14Q96F25 216 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 FCRL3Q96P31 734 aaPredicted RBP12.63□□□□□ -0.39
SHMT2-233ENST00000557529 CPNE1Q99829 537 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 SFXN1Q9H9B4 322 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 CERS4Q9HA82 394 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 KIF9Q9HAQ2 790 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 DZANK1Q9NVP4 752 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 CCL26Q9Y258 94 aa12.63□□□□□ -0.39
SHMT2-233ENST00000557529 ARIH1Q9Y4X5 557 aaPredicted RBP12.63□□□□□ -0.39
SHMT2-233ENST00000557529 A0A1W2PPM1 405 aa12.62□□□□□ -0.39
SHMT2-233ENST00000557529 TRIM49D1C9J1S8 452 aa12.62□□□□□ -0.39
SHMT2-233ENST00000557529 SLC9A3R1O14745 358 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-233ENST00000557529 INSIG1O15503 277 aa12.62□□□□□ -0.39
SHMT2-233ENST00000557529 SNAP91O60641 907 aa12.62□□□□□ -0.39
SHMT2-233ENST00000557529 TMCC1O94876 653 aa12.62□□□□□ -0.39
SHMT2-233ENST00000557529 ERVK-10P10266 1014 aa12.62□□□□□ -0.39
SHMT2-233ENST00000557529 CR2P20023 1033 aa12.62□□□□□ -0.39
SHMT2-233ENST00000557529 CA4P22748 312 aa12.62□□□□□ -0.39
SHMT2-233ENST00000557529 NMBRP28336 390 aa12.62□□□□□ -0.39
SHMT2-233ENST00000557529 GP5P40197 560 aa12.62□□□□□ -0.39
SHMT2-233ENST00000557529 NRIP1P48552 1158 aa12.62□□□□□ -0.39
SHMT2-233ENST00000557529 PLK1P53350 603 aa12.62□□□□□ -0.39
SHMT2-233ENST00000557529 NSUN2Q08J23 767 aaKnown RBP eCLIP12.62□□□□□ -0.39
SHMT2-233ENST00000557529 USP4Q13107 963 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms