RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 NPR3P17342 541 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 NFKB1P19838 968 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 WARSP23381 471 aaKnown RBP16.47■□□□□ 0.23
SHMT2-231ENST00000557433 NMBRP28336 390 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 TAF6P49848 677 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 ATP4BP51164 291 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 VGLL4Q14135 290 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 SMAD1Q15797 465 aaKnown RBP16.47■□□□□ 0.23
SHMT2-231ENST00000557433 TMEM198Q66K66 360 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 FAM45BPQ6NSW5 357 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 PKN3Q6P5Z2 889 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 DHRS4L2Q6PKH6 230 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 TOP6BLQ8N6T0 577 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 FAM45AQ8TCE6 357 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 GPR78Q96P69 363 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 PPP1R16BQ96T49 567 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 NPAS2Q99743 824 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 APBA2Q99767 749 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 SLC25A23Q9BV35 468 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 ANKRD60Q9BZ19 345 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 MROH8Q9H579 483 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 C8orf4Q9NR00 106 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 VPS45Q9NRW7 570 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 DDX18Q9NVP1 670 aaKnown RBP16.47■□□□□ 0.23
SHMT2-231ENST00000557433 SLC8A2Q9UPR5 921 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 NFKBIEO00221 500 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 PEX10O60683 326 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 F9P00740 461 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 LRP8Q14114 963 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 KRT80Q6KB66 452 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 NOTUMQ6P988 496 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 GADL1Q6ZQY3 521 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 AMIGO2Q86SJ2 522 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 ANKFN1Q8N957 763 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 GOLM1Q8NBJ4 401 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 B3GALNT2Q8NCR0 500 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 ACVR1CQ8NER5 493 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 RMND5BQ96G75 393 aaPredicted RBP16.47■□□□□ 0.23
SHMT2-231ENST00000557433 LPIN3Q9BQK8 851 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 COQ10BQ9H8M1 238 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 MEAF6Q9HAF1 191 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 PIGVQ9NUD9 493 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 FBXW11Q9UKB1 542 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 PCDHGB4Q9UN71 923 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 RNF11Q9Y3C5 154 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 PCDHGB5Q9Y5G0 923 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 A0A0G2JLL6 359 aaPredicted RBP16.46■□□□□ 0.23
SHMT2-231ENST00000557433 PHGDHO43175 533 aaKnown RBP16.46■□□□□ 0.23
SHMT2-231ENST00000557433 HUS1O60921 280 aa16.46■□□□□ 0.23
SHMT2-231ENST00000557433 TRPA1O75762 1119 aa16.46■□□□□ 0.23
SHMT2-231ENST00000557433 CD1EP15812 388 aa16.46■□□□□ 0.23
SHMT2-231ENST00000557433 PAMP19021 973 aa16.46■□□□□ 0.23
SHMT2-231ENST00000557433 LMO2P25791 158 aa16.46■□□□□ 0.23
SHMT2-231ENST00000557433 ADARP55265 1226 aaKnown RBP16.46■□□□□ 0.23
SHMT2-231ENST00000557433 NUP107P57740 925 aa16.46■□□□□ 0.23
SHMT2-231ENST00000557433 CCNA1P78396 465 aa16.46■□□□□ 0.23
SHMT2-231ENST00000557433 POU4F1Q01851 419 aa16.46■□□□□ 0.23
SHMT2-231ENST00000557433 NME3Q13232 169 aa16.46■□□□□ 0.23
SHMT2-231ENST00000557433 PDAP1Q13442 181 aaKnown RBP16.46■□□□□ 0.23
SHMT2-231ENST00000557433 OLIG2Q13516 323 aa16.46■□□□□ 0.23
SHMT2-231ENST00000557433 GK3PQ14409 553 aa16.46■□□□□ 0.23
SHMT2-231ENST00000557433 KCTD21Q4G0X4 260 aa16.46■□□□□ 0.23
SHMT2-231ENST00000557433 PRRT2Q7Z6L0 340 aaPredicted RBP16.46■□□□□ 0.23
SHMT2-231ENST00000557433 GABPB2Q8TAK5 448 aaPredicted RBP16.46■□□□□ 0.23
SHMT2-231ENST00000557433 SLC16A10Q8TF71 515 aa16.46■□□□□ 0.23
SHMT2-231ENST00000557433 ATP6V1E2Q96A05 226 aa16.46■□□□□ 0.23
SHMT2-231ENST00000557433 C18orf25Q96B23 403 aaPredicted RBP16.46■□□□□ 0.23
SHMT2-231ENST00000557433 DNAJC1Q96KC8 554 aaKnown RBP16.46■□□□□ 0.23
SHMT2-231ENST00000557433 PPP1R36Q96LQ0 422 aa16.46■□□□□ 0.23
SHMT2-231ENST00000557433 UPF3AQ9H1J1 476 aaKnown RBP16.46■□□□□ 0.23
SHMT2-231ENST00000557433 CACNA2D2Q9NY47 1150 aa16.46■□□□□ 0.23
SHMT2-231ENST00000557433 CSADQ9Y600 493 aa16.46■□□□□ 0.23
SHMT2-231ENST00000557433 A0A0J9YVX5 310 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 FAM95CA0A1B0GW59 222 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 C7orf72A4D263 438 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 H3BSA7 217 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 STX16-NPEPL1H3BU86 382 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 ANXA9O76027 345 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 AHSGP02765 367 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 BMP2P12643 396 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 AXLP30530 894 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 HOXA11P31270 313 aaPredicted RBP16.45■□□□□ 0.22
SHMT2-231ENST00000557433 ABCG1P45844 678 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 ACADVLP49748 655 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 ZBTB17Q13105 803 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 DGKDQ16760 1214 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 POTEHQ6S545 545 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 RNF148Q8N7C7 305 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 CCNYL1Q8N7R7 359 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 TRMOQ9BU70 441 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 TRPV6Q9H1D0 765 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 CLK4Q9HAZ1 481 aaKnown RBP16.45■□□□□ 0.22
SHMT2-231ENST00000557433 TBCCD1Q9NVR7 557 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 ARMC1Q9NVT9 282 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 CD300AQ9UGN4 299 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 HES2Q9Y543 173 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 TRIM64CA6NLI5 447 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 KCNU1A8MYU2 1149 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 PSMD12O00232 456 aaPredicted RBP16.45■□□□□ 0.22
SHMT2-231ENST00000557433 UBDO15205 165 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms