RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 HLTFQ14527 1009 aaKnown RBP eCLIP14.76□□□□□ -0.05
SHMT2-208ENST00000553868 USP39Q53GS9 565 aaKnown RBP14.76□□□□□ -0.05
SHMT2-208ENST00000553868 FAM133BQ5BKY9 247 aaKnown RBP14.76□□□□□ -0.05
SHMT2-208ENST00000553868 DUPD1Q68J44 220 aa14.76□□□□□ -0.05
SHMT2-208ENST00000553868 NADSYN1Q6IA69 706 aa14.76□□□□□ -0.05
SHMT2-208ENST00000553868 HTR3DQ70Z44 454 aa14.76□□□□□ -0.05
SHMT2-208ENST00000553868 SYT13Q7L8C5 426 aa14.76□□□□□ -0.05
SHMT2-208ENST00000553868 HDDC3Q8N4P3 179 aa14.76□□□□□ -0.05
SHMT2-208ENST00000553868 FRMD1Q8N878 549 aa14.76□□□□□ -0.05
SHMT2-208ENST00000553868 CCNYQ8ND76 341 aa14.76□□□□□ -0.05
SHMT2-208ENST00000553868 BPIFB1Q8TDL5 484 aa14.76□□□□□ -0.05
SHMT2-208ENST00000553868 ADAMTS14Q8WXS8 1223 aa14.76□□□□□ -0.05
SHMT2-208ENST00000553868 HDAC11Q96DB2 347 aa14.76□□□□□ -0.05
SHMT2-208ENST00000553868 KIF9Q9HAQ2 790 aa14.76□□□□□ -0.05
SHMT2-208ENST00000553868 HPS4Q9NQG7 708 aa14.76□□□□□ -0.05
SHMT2-208ENST00000553868 TDP1Q9NUW8 608 aa14.76□□□□□ -0.05
SHMT2-208ENST00000553868 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 ANTXRLA6NF34 631 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 BHMG1C9JSJ3 638 aaPredicted RBP14.75□□□□□ -0.05
SHMT2-208ENST00000553868 J3QKU1 62 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 LEFTY2O00292 366 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 ATXN7O15265 892 aaPredicted RBP14.75□□□□□ -0.05
SHMT2-208ENST00000553868 KCNN4O15554 427 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 CLDN11O75508 207 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 KLKB1P03952 638 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 FTH1P19P0C7X4 201 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 CD59P13987 128 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 TCF3P15923 654 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 ITIH2P19823 946 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 WEE1P30291 646 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 GALK1P51570 392 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 CDH4P55283 916 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 YBEYP58557 167 aaPredicted RBP14.75□□□□□ -0.05
SHMT2-208ENST00000553868 PRKD1Q15139 912 aaPredicted RBP14.75□□□□□ -0.05
SHMT2-208ENST00000553868 ANO7Q6IWH7 933 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 Q6ZNB5 142 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 CHST9Q7L1S5 443 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 PCGF5Q86SE9 256 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 NLRP14Q86W24 1093 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 TMEFF1Q8IYR6 380 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 UMODL1-AS1Q8N2C9 162 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 CPXM2Q8N436 756 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 ATPAF2Q8N5M1 289 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 KIAA1958Q8N8K9 716 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 FAM71DQ8N9W8 422 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 HJURPQ8NCD3 748 aaPredicted RBP14.75□□□□□ -0.05
SHMT2-208ENST00000553868 PIP4K2CQ8TBX8 421 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 SH3RF2Q8TEC5 729 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 RLN3Q8WXF3 142 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 IFT81Q8WYA0 676 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 RTP4Q96DX8 246 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 SNF8Q96H20 258 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 TRIM31Q9BZY9 425 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 DPH5Q9H2P9 285 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 EBF3Q9H4W6 596 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 MPP6Q9NZW5 540 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 WHRNQ9P202 907 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 PAK5Q9P286 719 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 NEU2Q9Y3R4 380 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 MFHAS1Q9Y4C4 1052 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 KIAA1549LQ6ZVL6 1849 aa14.75□□□□□ -0.05
SHMT2-208ENST00000553868 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.74□□□□□ -0.05
SHMT2-208ENST00000553868 GOLGA6L7A0A1B0GV03 622 aa14.74□□□□□ -0.05
SHMT2-208ENST00000553868 A0A1B0GVM2 712 aa14.74□□□□□ -0.05
SHMT2-208ENST00000553868 TCAF2A6NFQ2 919 aa14.74□□□□□ -0.05
SHMT2-208ENST00000553868 ARHGAP42A6NI28 874 aa14.74□□□□□ -0.05
SHMT2-208ENST00000553868 SH3BP5O60239 455 aa14.74□□□□□ -0.05
SHMT2-208ENST00000553868 CFIP05156 583 aa14.74□□□□□ -0.05
SHMT2-208ENST00000553868 RBL1P28749 1068 aa14.74□□□□□ -0.05
SHMT2-208ENST00000553868 ETFBP38117 255 aa14.74□□□□□ -0.05
SHMT2-208ENST00000553868 GARSP41250 739 aaKnown RBP14.74□□□□□ -0.05
SHMT2-208ENST00000553868 CYP4F3Q08477 520 aa14.74□□□□□ -0.05
SHMT2-208ENST00000553868 PPIDQ08752 370 aaKnown RBP14.74□□□□□ -0.05
SHMT2-208ENST00000553868 AP1B1Q10567 949 aa14.74□□□□□ -0.05
SHMT2-208ENST00000553868 ZNF177Q13360 481 aaPredicted RBP14.74□□□□□ -0.05
SHMT2-208ENST00000553868 TRIP6Q15654 476 aaKnown RBP14.74□□□□□ -0.05
SHMT2-208ENST00000553868 P3H1Q32P28 736 aa14.74□□□□□ -0.05
SHMT2-208ENST00000553868 PARP15Q460N3 678 aa14.74□□□□□ -0.05
SHMT2-208ENST00000553868 C6orf118Q5T5N4 469 aa14.74□□□□□ -0.05
SHMT2-208ENST00000553868 TIGD7Q6NT04 549 aaPredicted RBP14.74□□□□□ -0.05
SHMT2-208ENST00000553868 CCDC117Q8IWD4 279 aaPredicted RBP14.74□□□□□ -0.05
SHMT2-208ENST00000553868 FAM217AQ8IXS0 508 aa14.74□□□□□ -0.05
SHMT2-208ENST00000553868 NPWQ8N729 165 aa14.74□□□□□ -0.05
SHMT2-208ENST00000553868 TSTD1Q8NFU3 115 aa14.74□□□□□ -0.05
SHMT2-208ENST00000553868 HTR3CQ8WXA8 447 aa14.74□□□□□ -0.05
SHMT2-208ENST00000553868 CASKIN2Q8WXE0 1202 aa14.74□□□□□ -0.05
SHMT2-208ENST00000553868 IGSF8Q969P0 613 aa14.74□□□□□ -0.05
SHMT2-208ENST00000553868 TSGA13Q96PP4 275 aa14.74□□□□□ -0.05
SHMT2-208ENST00000553868 VAT1Q99536 393 aa14.74□□□□□ -0.05
SHMT2-208ENST00000553868 USP29Q9HBJ7 922 aa14.74□□□□□ -0.05
SHMT2-208ENST00000553868 TBC1D14Q9P2M4 693 aa14.74□□□□□ -0.05
SHMT2-208ENST00000553868 MTRF1LQ9UGC7 380 aaKnown RBP14.74□□□□□ -0.05
SHMT2-208ENST00000553868 SNX24Q9Y343 169 aa14.74□□□□□ -0.05
SHMT2-208ENST00000553868 ANAPC1Q9H1A4 1944 aa14.73□□□□□ -0.05
SHMT2-208ENST00000553868 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP14.73□□□□□ -0.05
SHMT2-208ENST00000553868 ESYT3A0FGR9 886 aa14.73□□□□□ -0.05
SHMT2-208ENST00000553868 C5orf60A6NFR6 353 aa14.73□□□□□ -0.05
SHMT2-208ENST00000553868 ZSCAN5CA6NGD5 496 aaPredicted RBP14.73□□□□□ -0.05
SHMT2-208ENST00000553868 TK2O00142 265 aa14.73□□□□□ -0.05
SHMT2-208ENST00000553868 SMAPO00193 183 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms