RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 METTL6Q8TCB7 284 aa5.23□□□□□ -1.57
LIMA1-205ENST00000550592 FAR1Q8WVX9 515 aa5.23□□□□□ -1.57
LIMA1-205ENST00000550592 KIF1BPQ96EK5 621 aa5.23□□□□□ -1.57
LIMA1-205ENST00000550592 TREX2Q9BQ50 279 aaPredicted RBP5.23□□□□□ -1.57
LIMA1-205ENST00000550592 SLC32A1Q9H598 525 aa5.23□□□□□ -1.57
LIMA1-205ENST00000550592 ENTPD7Q9NQZ7 604 aa5.23□□□□□ -1.57
LIMA1-205ENST00000550592 PDGFCQ9NRA1 345 aa5.23□□□□□ -1.57
LIMA1-205ENST00000550592 FLRT1Q9NZU1 646 aa5.23□□□□□ -1.57
LIMA1-205ENST00000550592 SWAP70Q9UH65 585 aa5.23□□□□□ -1.57
LIMA1-205ENST00000550592 LAMP3Q9UQV4 416 aa5.23□□□□□ -1.57
LIMA1-205ENST00000550592 ROBO1Q9Y6N7 1651 aa5.23□□□□□ -1.57
LIMA1-205ENST00000550592 PHLPP1O60346 1717 aa5.23□□□□□ -1.57
LIMA1-205ENST00000550592 KDM5DQ9BY66 1539 aa5.23□□□□□ -1.57
LIMA1-205ENST00000550592 STRCP1A6NGW2 1772 aa5.22□□□□□ -1.57
LIMA1-205ENST00000550592 DIP2CQ9Y2E4 1556 aa5.22□□□□□ -1.57
LIMA1-205ENST00000550592 LRRC9Q6ZRR7 1453 aa5.22□□□□□ -1.57
LIMA1-205ENST00000550592 DPPA5A6NC42 116 aa5.22□□□□□ -1.57
LIMA1-205ENST00000550592 PABPN1LA6NDY0 278 aaKnown RBP5.22□□□□□ -1.57
LIMA1-205ENST00000550592 FOXO6A8MYZ6 492 aa5.22□□□□□ -1.57
LIMA1-205ENST00000550592 PPP6CO00743 305 aa5.22□□□□□ -1.57
LIMA1-205ENST00000550592 TP73O15350 636 aa5.22□□□□□ -1.57
LIMA1-205ENST00000550592 PRPF4O43172 522 aaKnown RBP eCLIP5.22□□□□□ -1.57
LIMA1-205ENST00000550592 CBX6O95503 412 aa5.22□□□□□ -1.57
LIMA1-205ENST00000550592 CLEC3BP05452 202 aa5.22□□□□□ -1.57
LIMA1-205ENST00000550592 HSPA1AP0DMV8 641 aaKnown RBP5.22□□□□□ -1.57
LIMA1-205ENST00000550592 HSPA1BP0DMV9 641 aaKnown RBP5.22□□□□□ -1.57
LIMA1-205ENST00000550592 ATP5F1P24539 256 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-205ENST00000550592 KLRC2P26717 231 aa5.22□□□□□ -1.57
LIMA1-205ENST00000550592 ABCD1P33897 745 aa5.22□□□□□ -1.57
LIMA1-205ENST00000550592 POLD2P49005 469 aa5.22□□□□□ -1.57
LIMA1-205ENST00000550592 RPS13P62277 151 aaKnown RBP5.22□□□□□ -1.57
LIMA1-205ENST00000550592 DAZAP2Q15038 168 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-205ENST00000550592 PAPD7Q5XG87 772 aaKnown RBP5.22□□□□□ -1.57
LIMA1-205ENST00000550592 TBC1D9BQ66K14 1250 aa5.22□□□□□ -1.57
LIMA1-205ENST00000550592 TTLL5Q6EMB2 1281 aa5.22□□□□□ -1.57
LIMA1-205ENST00000550592 TMEM81Q6P7N7 255 aa5.22□□□□□ -1.57
LIMA1-205ENST00000550592 AAGABQ6PD74 315 aa5.22□□□□□ -1.57
LIMA1-205ENST00000550592 RRM2BQ7LG56 351 aa5.22□□□□□ -1.57
LIMA1-205ENST00000550592 IGFN1Q86VF2 1251 aa5.22□□□□□ -1.57
LIMA1-205ENST00000550592 DNAAF1Q8NEP3 725 aa5.22□□□□□ -1.57
LIMA1-205ENST00000550592 SAAL1Q96ER3 474 aa5.22□□□□□ -1.57
LIMA1-205ENST00000550592 CHCHD6Q9BRQ6 235 aa5.22□□□□□ -1.57
LIMA1-205ENST00000550592 MRIQ9BWK5 157 aa5.22□□□□□ -1.57
LIMA1-205ENST00000550592 CXorf56Q9H5V9 222 aa5.22□□□□□ -1.57
LIMA1-205ENST00000550592 ACTR5Q9H9F9 607 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-205ENST00000550592 PLEKHA5Q9HAU0 1116 aa5.22□□□□□ -1.57
LIMA1-205ENST00000550592 PAPOLBQ9NRJ5 636 aaKnown RBP5.22□□□□□ -1.57
LIMA1-205ENST00000550592 UTS2RQ9UKP6 389 aa5.22□□□□□ -1.57
LIMA1-205ENST00000550592 MLH3Q9UHC1 1453 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 A0A0A0MQY5 61 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 TRBV5-7A0A0A0MS05 114 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 KIR2DS5A0A0G2JLQ3 304 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 ARHGAP10A1A4S6 786 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 PI4KAP2A4QPH2 592 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 NPIPB15A6NHN6 443 aaPredicted RBP5.21□□□□□ -1.58
LIMA1-205ENST00000550592 KIR2DS3K7RE56 304 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 UGDHO60701 494 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 RBMXL2O75526 392 aaKnown RBP5.21□□□□□ -1.58
LIMA1-205ENST00000550592 RNASEH2AO75792 299 aaKnown RBP5.21□□□□□ -1.58
LIMA1-205ENST00000550592 BCAR3O75815 825 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 IL1AP01583 271 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 CTSAP10619 480 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 CPA2P48052 419 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 HARS2P49590 506 aaKnown RBP5.21□□□□□ -1.58
LIMA1-205ENST00000550592 GHRHRQ02643 423 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 PMPCAQ10713 525 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 PKP1Q13835 747 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 ERV3-1Q14264 604 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 TBCEQ15813 527 aaPredicted RBP5.21□□□□□ -1.58
LIMA1-205ENST00000550592 MIDNQ504T8 468 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 SLC45A4Q5BKX6 768 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 TTC39AQ5SRH9 613 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 CFAP161Q6P656 301 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 DEF8Q6ZN54 512 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 CPLX4Q7Z7G2 160 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 WDR5BQ86VZ2 330 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 NGEFQ8N5V2 710 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 ZMIZ2Q8NF64 920 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 KCNG4Q8TDN1 519 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 TMEM170AQ8WVE7 144 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 SIGLEC11Q96RL6 698 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 SH2D3AQ9BRG2 576 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 TUBB6Q9BUF5 446 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 SCNM1Q9BWG6 230 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 SPAG4Q9NPE6 437 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 KLHL13Q9P2N7 655 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 HSPB7Q9UBY9 170 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 FBXO2Q9UK22 296 aaPredicted RBP5.21□□□□□ -1.58
LIMA1-205ENST00000550592 AGO2Q9UKV8 859 aaKnown RBP5.21□□□□□ -1.58
LIMA1-205ENST00000550592 SCINQ9Y6U3 715 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 DEPDC5O75140 1603 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 NHSL1Q5SYE7 1610 aa5.21□□□□□ -1.58
LIMA1-205ENST00000550592 TNRQ92752 1358 aa5.2□□□□□ -1.58
LIMA1-205ENST00000550592 ABCC1P33527 1531 aa5.2□□□□□ -1.58
LIMA1-205ENST00000550592 FAM135AQ9P2D6 1515 aa5.2□□□□□ -1.58
LIMA1-205ENST00000550592 TRBV5-3A0A0A0MS03 114 aa5.2□□□□□ -1.58
LIMA1-205ENST00000550592 TEX13CA0A0J9YWL9 993 aa5.2□□□□□ -1.58
LIMA1-205ENST00000550592 SMIM35A0A1B0GVV1 85 aa5.2□□□□□ -1.58
LIMA1-205ENST00000550592 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-205ENST00000550592 FAM157AC9JC47 383 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms