RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 KYAT3Q6YP21 454 aaKnown RBP10.73□□□□□ -0.69
VPS29-208ENST00000550267 USP53Q70EK8 1073 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 DCP2Q8IU60 420 aaKnown RBP10.73□□□□□ -0.69
VPS29-208ENST00000550267 CHST14Q8NCH0 376 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 GALNT6Q8NCL4 622 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 OR2A12Q8NGT7 310 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 TPCN2Q8NHX9 752 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 LMX1AQ8TE12 382 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 KAT5Q92993 513 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 RNF34Q969K3 372 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 FEM1AQ9BSK4 669 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 SYNDIG1Q9H7V2 258 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 DYRK4Q9NR20 520 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 ST7Q9NRC1 585 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 USP25Q9UHP3 1055 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 SALL4Q9UJQ4 1053 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 VPS28Q9UK41 221 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 OR51B4Q9Y5P0 310 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 CSNK1G3Q9Y6M4 447 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 NAV2Q8IVL1 2488 aa10.72□□□□□ -0.69
VPS29-208ENST00000550267 SPTY2D1-AS1A0A0U1RR47 76 aa10.72□□□□□ -0.69
VPS29-208ENST00000550267 K7ERQ8 282 aa10.72□□□□□ -0.69
VPS29-208ENST00000550267 SART1O43290 800 aaKnown RBP10.72□□□□□ -0.69
VPS29-208ENST00000550267 NOBOXO60393 691 aa10.72□□□□□ -0.69
VPS29-208ENST00000550267 TCEA3O75764 348 aa10.72□□□□□ -0.69
VPS29-208ENST00000550267 GJB6O95452 261 aa10.72□□□□□ -0.69
VPS29-208ENST00000550267 PAK4O96013 591 aaPredicted RBP10.72□□□□□ -0.69
VPS29-208ENST00000550267 MT-CO1P00395 513 aa10.72□□□□□ -0.69
VPS29-208ENST00000550267 F13A1P00488 732 aa10.72□□□□□ -0.69
VPS29-208ENST00000550267 ITGA2BP08514 1039 aa10.72□□□□□ -0.69
VPS29-208ENST00000550267 FAM87AP0C7U9 286 aa10.72□□□□□ -0.69
VPS29-208ENST00000550267 ZSCAN22P10073 491 aaPredicted RBP10.72□□□□□ -0.69
VPS29-208ENST00000550267 RPL34P49207 117 aaKnown RBP10.72□□□□□ -0.69
VPS29-208ENST00000550267 SNRPNP63162 240 aaKnown RBP10.72□□□□□ -0.69
VPS29-208ENST00000550267 DNM1Q05193 864 aaKnown RBP10.72□□□□□ -0.69
VPS29-208ENST00000550267 CCDC15Q0P6D6 951 aa10.72□□□□□ -0.69
VPS29-208ENST00000550267 DPYDQ12882 1025 aa10.72□□□□□ -0.69
VPS29-208ENST00000550267 STILQ15468 1287 aa10.72□□□□□ -0.69
VPS29-208ENST00000550267 TPRG1LQ5T0D9 272 aa10.72□□□□□ -0.69
VPS29-208ENST00000550267 ZNF574Q6ZN55 896 aaPredicted RBP10.72□□□□□ -0.69
VPS29-208ENST00000550267 ERN2Q76MJ5 926 aaKnown RBP10.72□□□□□ -0.69
VPS29-208ENST00000550267 BEND5Q7L4P6 421 aa10.72□□□□□ -0.69
VPS29-208ENST00000550267 PARGQ86W56 976 aa10.72□□□□□ -0.69
VPS29-208ENST00000550267 SMYD4Q8IYR2 804 aaPredicted RBP10.72□□□□□ -0.69
VPS29-208ENST00000550267 ATP11CQ8NB49 1132 aa10.72□□□□□ -0.69
VPS29-208ENST00000550267 SGF29Q96ES7 293 aa10.72□□□□□ -0.69
VPS29-208ENST00000550267 RPRD1AQ96P16 312 aaPredicted RBP10.72□□□□□ -0.69
VPS29-208ENST00000550267 PPP1R9BQ96SB3 815 aa10.72□□□□□ -0.69
VPS29-208ENST00000550267 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.72□□□□□ -0.69
VPS29-208ENST00000550267 NCKIPSDQ9NZQ3 722 aa10.72□□□□□ -0.69
VPS29-208ENST00000550267 SLC12A6Q9UHW9 1150 aa10.72□□□□□ -0.69
VPS29-208ENST00000550267 IPO11Q9UI26 975 aaKnown RBP10.72□□□□□ -0.69
VPS29-208ENST00000550267 RCOR1Q9UKL0 485 aa10.72□□□□□ -0.69
VPS29-208ENST00000550267 VANGL2Q9ULK5 521 aa10.72□□□□□ -0.69
VPS29-208ENST00000550267 HPSEQ9Y251 543 aa10.72□□□□□ -0.69
VPS29-208ENST00000550267 HS3ST3A1Q9Y663 406 aa10.72□□□□□ -0.69
VPS29-208ENST00000550267 SYNJ2BP-COX16A0A087WUM0 186 aa10.71□□□□□ -0.69
VPS29-208ENST00000550267 K7ELQ4 463 aaPredicted RBP10.71□□□□□ -0.69
VPS29-208ENST00000550267 SMAD6O43541 496 aaKnown RBP10.71□□□□□ -0.69
VPS29-208ENST00000550267 SNAP91O60641 907 aa10.71□□□□□ -0.69
VPS29-208ENST00000550267 RRM1P23921 792 aa10.71□□□□□ -0.69
VPS29-208ENST00000550267 SLC5A2P31639 672 aa10.71□□□□□ -0.69
VPS29-208ENST00000550267 GPD2P43304 727 aa10.71□□□□□ -0.69
VPS29-208ENST00000550267 RABIFP47224 123 aa10.71□□□□□ -0.69
VPS29-208ENST00000550267 EIF2B5Q13144 721 aaKnown RBP10.71□□□□□ -0.69
VPS29-208ENST00000550267 C1orf61Q13536 156 aa10.71□□□□□ -0.69
VPS29-208ENST00000550267 EIF4EBP2Q13542 120 aaPredicted RBP10.71□□□□□ -0.69
VPS29-208ENST00000550267 PDE1CQ14123 709 aaPredicted RBP10.71□□□□□ -0.69
VPS29-208ENST00000550267 SPIDRQ14159 915 aa10.71□□□□□ -0.69
VPS29-208ENST00000550267 XP32Q5T750 250 aa10.71□□□□□ -0.69
VPS29-208ENST00000550267 DENND1BQ6P3S1 775 aa10.71□□□□□ -0.69
VPS29-208ENST00000550267 XKR5Q6UX68 686 aa10.71□□□□□ -0.69
VPS29-208ENST00000550267 JAMLQ86YT9 394 aa10.71□□□□□ -0.69
VPS29-208ENST00000550267 SLC35F3Q8IY50 421 aa10.71□□□□□ -0.69
VPS29-208ENST00000550267 RBFAQ8N0V3 343 aa10.71□□□□□ -0.69
VPS29-208ENST00000550267 PPM1KQ8N3J5 372 aa10.71□□□□□ -0.69
VPS29-208ENST00000550267 TMIEQ8NEW7 156 aa10.71□□□□□ -0.69
VPS29-208ENST00000550267 GRIN3AQ8TCU5 1115 aa10.71□□□□□ -0.69
VPS29-208ENST00000550267 CCDC114Q96M63 670 aa10.71□□□□□ -0.69
VPS29-208ENST00000550267 PSMB7Q99436 277 aa10.71□□□□□ -0.69
VPS29-208ENST00000550267 IL12RB2Q99665 862 aa10.71□□□□□ -0.69
VPS29-208ENST00000550267 CCDC3Q9BQI4 270 aa10.71□□□□□ -0.69
VPS29-208ENST00000550267 TRIM62Q9BVG3 475 aa10.71□□□□□ -0.69
VPS29-208ENST00000550267 SLC17A9Q9BYT1 436 aa10.71□□□□□ -0.69
VPS29-208ENST00000550267 DOCK9Q9BZ29 2069 aa10.71□□□□□ -0.69
VPS29-208ENST00000550267 MUC3BQ9H195 1237 aa10.71□□□□□ -0.69
VPS29-208ENST00000550267 TNKS2Q9H2K2 1166 aa10.71□□□□□ -0.69
VPS29-208ENST00000550267 TCEAL2Q9H3H9 227 aaPredicted RBP10.71□□□□□ -0.69
VPS29-208ENST00000550267 FAM204AQ9H8W3 233 aa10.71□□□□□ -0.69
VPS29-208ENST00000550267 POPDC2Q9HBU9 364 aa10.71□□□□□ -0.69
VPS29-208ENST00000550267 COX16Q9P0S2 106 aa10.71□□□□□ -0.69
VPS29-208ENST00000550267 ANKMY1Q9P2S6 941 aa10.71□□□□□ -0.69
VPS29-208ENST00000550267 HS3ST2Q9Y278 367 aa10.71□□□□□ -0.69
VPS29-208ENST00000550267 A0A1B0GTH6 734 aa10.7□□□□□ -0.7
VPS29-208ENST00000550267 E5RJQ4 531 aa10.7□□□□□ -0.7
VPS29-208ENST00000550267 NTN3O00634 580 aaPredicted RBP10.7□□□□□ -0.7
VPS29-208ENST00000550267 TPP1O14773 563 aa10.7□□□□□ -0.7
VPS29-208ENST00000550267 PLD2O14939 933 aa10.7□□□□□ -0.7
VPS29-208ENST00000550267 AFPP02771 609 aaKnown RBP10.7□□□□□ -0.7
VPS29-208ENST00000550267 PRNPP04156 253 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms