RNA–Protein interactions for RNA: ENST00000541005.1

LTBR-208, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 583 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-208ENST00000541005 SNX19Q92543 992 aa13.32□□□□□ -0.28
LTBR-208ENST00000541005 CELF6Q96J87 481 aaKnown RBP13.32□□□□□ -0.28
LTBR-208ENST00000541005 ZNF670Q9BS34 389 aa13.32□□□□□ -0.28
LTBR-208ENST00000541005 ANP32EQ9BTT0 268 aa13.32□□□□□ -0.28
LTBR-208ENST00000541005 OSBPL1AQ9BXW6 950 aa13.32□□□□□ -0.28
LTBR-208ENST00000541005 MIR1-1HGQ9H1L0 117 aa13.32□□□□□ -0.28
LTBR-208ENST00000541005 DYRK4Q9NR20 520 aa13.32□□□□□ -0.28
LTBR-208ENST00000541005 FAM47DPA6NHR8 397 aa13.31□□□□□ -0.28
LTBR-208ENST00000541005 C4orf47A7E2U8 309 aa13.31□□□□□ -0.28
LTBR-208ENST00000541005 ZNF487B1APH4 448 aa13.31□□□□□ -0.28
LTBR-208ENST00000541005 J3KR12 359 aa13.31□□□□□ -0.28
LTBR-208ENST00000541005 IGSF6O95976 241 aa13.31□□□□□ -0.28
LTBR-208ENST00000541005 AMPD1P23109 780 aa13.31□□□□□ -0.28
LTBR-208ENST00000541005 SERPINB6P35237 376 aa13.31□□□□□ -0.28
LTBR-208ENST00000541005 DNA2P51530 1060 aa13.31□□□□□ -0.28
LTBR-208ENST00000541005 NEK3P51956 506 aa13.31□□□□□ -0.28
LTBR-208ENST00000541005 CDH6P55285 790 aa13.31□□□□□ -0.28
LTBR-208ENST00000541005 RHOAP61586 193 aa13.31□□□□□ -0.28
LTBR-208ENST00000541005 PPP2CBP62714 309 aa13.31□□□□□ -0.28
LTBR-208ENST00000541005 RACK1P63244 317 aaKnown RBP13.31□□□□□ -0.28
LTBR-208ENST00000541005 PPP2CAP67775 309 aa13.31□□□□□ -0.28
LTBR-208ENST00000541005 IL10RBQ08334 325 aa13.31□□□□□ -0.28
LTBR-208ENST00000541005 GRIK2Q13002 908 aa13.31□□□□□ -0.28
LTBR-208ENST00000541005 DPYSL3Q14195 570 aa13.31□□□□□ -0.28
LTBR-208ENST00000541005 KRT81Q14533 505 aa13.31□□□□□ -0.28
LTBR-208ENST00000541005 RFTN1Q14699 578 aaPredicted RBP13.31□□□□□ -0.28
LTBR-208ENST00000541005 PDK2Q15119 407 aa13.31□□□□□ -0.28
LTBR-208ENST00000541005 MYLK3Q32MK0 819 aa13.31□□□□□ -0.28
LTBR-208ENST00000541005 POM121L1PQ3SYA9 428 aa13.31□□□□□ -0.28
LTBR-208ENST00000541005 LEKR1Q6ZMV7 388 aa13.31□□□□□ -0.28
LTBR-208ENST00000541005 VSIG1Q86XK7 387 aa13.31□□□□□ -0.28
LTBR-208ENST00000541005 FAF2Q96CS3 445 aa13.31□□□□□ -0.28
LTBR-208ENST00000541005 CPEB1Q9BZB8 566 aaKnown RBP13.31□□□□□ -0.28
LTBR-208ENST00000541005 ZDHHC6Q9H6R6 413 aa13.31□□□□□ -0.28
LTBR-208ENST00000541005 EBF2Q9HAK2 575 aa13.31□□□□□ -0.28
LTBR-208ENST00000541005 TM9SF3Q9HD45 589 aa13.31□□□□□ -0.28
LTBR-208ENST00000541005 ETNK2Q9NVF9 386 aa13.31□□□□□ -0.28
LTBR-208ENST00000541005 DNAAF2Q9NVR5 837 aaKnown RBP13.31□□□□□ -0.28
LTBR-208ENST00000541005 GOLGA4Q13439 2230 aaKnown RBP13.31□□□□□ -0.28
LTBR-208ENST00000541005 UPK3BL1B0FP48 263 aa13.3□□□□□ -0.28
LTBR-208ENST00000541005 UPK3BL2E5RIL1 263 aa13.3□□□□□ -0.28
LTBR-208ENST00000541005 DFFAO00273 331 aa13.3□□□□□ -0.28
LTBR-208ENST00000541005 AP1G1O43747 822 aa13.3□□□□□ -0.28
LTBR-208ENST00000541005 GJB3O75712 270 aa13.3□□□□□ -0.28
LTBR-208ENST00000541005 CD48P09326 243 aa13.3□□□□□ -0.28
LTBR-208ENST00000541005 ADRB3P13945 408 aa13.3□□□□□ -0.28
LTBR-208ENST00000541005 CYLC1P35663 651 aaPredicted RBP13.3□□□□□ -0.28
LTBR-208ENST00000541005 CSNK1DP48730 415 aa13.3□□□□□ -0.28
LTBR-208ENST00000541005 BNC1Q01954 994 aa13.3□□□□□ -0.28
LTBR-208ENST00000541005 MESDQ14696 234 aa13.3□□□□□ -0.28
LTBR-208ENST00000541005 CYTH1Q15438 398 aa13.3□□□□□ -0.28
LTBR-208ENST00000541005 TEAD4Q15561 434 aa13.3□□□□□ -0.28
LTBR-208ENST00000541005 ZNF805Q5CZA5 627 aa13.3□□□□□ -0.28
LTBR-208ENST00000541005 ATXN7L2Q5T6C5 722 aaPredicted RBP13.3□□□□□ -0.28
LTBR-208ENST00000541005 LRRC38Q5VT99 294 aa13.3□□□□□ -0.28
LTBR-208ENST00000541005 IL27RAQ6UWB1 636 aa13.3□□□□□ -0.28
LTBR-208ENST00000541005 PARS2Q7L3T8 475 aaKnown RBP13.3□□□□□ -0.28
LTBR-208ENST00000541005 DGLUCYQ7Z3D6 616 aa13.3□□□□□ -0.28
LTBR-208ENST00000541005 ZSCAN30Q86W11 494 aa13.3□□□□□ -0.28
LTBR-208ENST00000541005 TMTC1Q8IUR5 882 aa13.3□□□□□ -0.28
LTBR-208ENST00000541005 MINDY1Q8N5J2 469 aa13.3□□□□□ -0.28
LTBR-208ENST00000541005 OR6K2Q8NGY2 324 aa13.3□□□□□ -0.28
LTBR-208ENST00000541005 RAB7BQ96AH8 199 aa13.3□□□□□ -0.28
LTBR-208ENST00000541005 ZNF599Q96NL3 588 aa13.3□□□□□ -0.28
LTBR-208ENST00000541005 SP110Q9HB58 689 aa13.3□□□□□ -0.28
LTBR-208ENST00000541005 FSCN3Q9NQT6 498 aa13.3□□□□□ -0.28
LTBR-208ENST00000541005 DKK3Q9UBP4 350 aa13.3□□□□□ -0.28
LTBR-208ENST00000541005 IPO11Q9UI26 975 aaKnown RBP13.3□□□□□ -0.28
LTBR-208ENST00000541005 DMTF1Q9Y222 760 aa13.3□□□□□ -0.28
LTBR-208ENST00000541005 TBC1D3DA0A087WVF3 549 aa13.29□□□□□ -0.28
LTBR-208ENST00000541005 TBC1D3IA0A087WXS9 549 aa13.29□□□□□ -0.28
LTBR-208ENST00000541005 TBC1D3EA0A087X179 549 aa13.29□□□□□ -0.28
LTBR-208ENST00000541005 TBC1D3KA0A087X1G2 549 aa13.29□□□□□ -0.28
LTBR-208ENST00000541005 A0A0A6YYK5 440 aaPredicted RBP13.29□□□□□ -0.28
LTBR-208ENST00000541005 TSPAN11A1L157 253 aa13.29□□□□□ -0.28
LTBR-208ENST00000541005 TBC1D3FA6NER0 549 aaPredicted RBP13.29□□□□□ -0.28
LTBR-208ENST00000541005 C16orf96A6NNT2 1141 aa13.29□□□□□ -0.28
LTBR-208ENST00000541005 TBC1D3LB9A6J9 549 aa13.29□□□□□ -0.28
LTBR-208ENST00000541005 KRIT1O00522 736 aa13.29□□□□□ -0.28
LTBR-208ENST00000541005 VILLO15195 856 aa13.29□□□□□ -0.28
LTBR-208ENST00000541005 TBC1D3HP0C7X1 549 aa13.29□□□□□ -0.28
LTBR-208ENST00000541005 SLC1A1P43005 524 aa13.29□□□□□ -0.28
LTBR-208ENST00000541005 SSR1P43307 286 aaKnown RBP13.29□□□□□ -0.28
LTBR-208ENST00000541005 MAPK8P45983 427 aa13.29□□□□□ -0.28
LTBR-208ENST00000541005 RAD51Q06609 339 aa13.29□□□□□ -0.28
LTBR-208ENST00000541005 MMRN1Q13201 1228 aa13.29□□□□□ -0.28
LTBR-208ENST00000541005 GRM3Q14832 879 aa13.29□□□□□ -0.28
LTBR-208ENST00000541005 ATP13A4Q4VNC1 1196 aa13.29□□□□□ -0.28
LTBR-208ENST00000541005 SETMARQ53H47 684 aaPredicted RBP13.29□□□□□ -0.28
LTBR-208ENST00000541005 TMCO4Q5TGY1 634 aa13.29□□□□□ -0.28
LTBR-208ENST00000541005 TBC1D3GQ6DHY5 549 aa13.29□□□□□ -0.28
LTBR-208ENST00000541005 TBC1D3CQ6IPX1 549 aa13.29□□□□□ -0.28
LTBR-208ENST00000541005 NAPEPLDQ6IQ20 393 aa13.29□□□□□ -0.28
LTBR-208ENST00000541005 ARHGAP36Q6ZRI8 547 aa13.29□□□□□ -0.28
LTBR-208ENST00000541005 LRRC49Q8IUZ0 686 aa13.29□□□□□ -0.28
LTBR-208ENST00000541005 MAP7D3Q8IWC1 876 aa13.29□□□□□ -0.28
LTBR-208ENST00000541005 TP53INP2Q8IXH6 220 aa13.29□□□□□ -0.28
LTBR-208ENST00000541005 TBC1D3Q8IZP1 549 aaPredicted RBP13.29□□□□□ -0.28
LTBR-208ENST00000541005 RYBPQ8N488 228 aaPredicted RBP13.29□□□□□ -0.28
LTBR-208ENST00000541005 PCDH19Q8TAB3 1148 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms