RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 C2CD4AQ8NCU7 369 aaPredicted RBP13.95□□□□□ -0.18
RTN3-210ENST00000540798 FAM13CQ8NE31 585 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 AGAP11Q8TF27 550 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 UBE2OQ9C0C9 1292 aaKnown RBP13.95□□□□□ -0.18
RTN3-210ENST00000540798 DNAJC16Q9Y2G8 782 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 GOLGA8TH3BQL2 631 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 PMPCBO75439 489 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 SERPINA6P08185 405 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 CCNHP51946 323 aaPredicted RBP13.95□□□□□ -0.18
RTN3-210ENST00000540798 HTRA3P83110 453 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 SLC10A7Q0GE19 358 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 MGAT5BQ3V5L5 792 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 PARP15Q460N3 678 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 C10orf120Q5SQS8 335 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 SNX30Q5VWJ9 437 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 RAP1GAP2Q684P5 730 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 MFSD6LQ8IWD5 586 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.95□□□□□ -0.18
RTN3-210ENST00000540798 PPP1R14CQ8TAE6 165 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 RDH11Q8TC12 318 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 SEPT5Q99719 369 aaPredicted RBP13.95□□□□□ -0.18
RTN3-210ENST00000540798 TTPALQ9BTX7 342 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 FSD1LQ9BXM9 530 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 CADM1Q9BY67 442 aaKnown RBP13.95□□□□□ -0.18
RTN3-210ENST00000540798 DNAJC28Q9NX36 388 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 MARCOQ9UEW3 520 aaPredicted RBP13.95□□□□□ -0.18
RTN3-210ENST00000540798 SLC2A6Q9UGQ3 507 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 LRFN2Q9ULH4 789 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 PCDHB12Q9Y5F1 795 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 SLC38A8A6NNN8 435 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 TMEM114B3SHH9 223 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 APOA4P06727 396 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 SBK3P0C264 359 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 KITP10721 976 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 COL6A2P12110 1019 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 CCND1P24385 295 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 CHRNA4P43681 627 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 MAPKAPK2P49137 400 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 KPNA1P52294 538 aaPredicted RBP13.95□□□□□ -0.18
RTN3-210ENST00000540798 IL10RBQ08334 325 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 SERINC3Q13530 473 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 TBCCQ15814 346 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 C11orf91Q3C1V1 193 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 RABGAP1LQ5R372 815 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 SLC8B1Q6J4K2 584 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 TREML1Q86YW5 311 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 WDR75Q8IWA0 830 aaKnown RBP13.95□□□□□ -0.18
RTN3-210ENST00000540798 ARRDC2Q8TBH0 407 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 MYEOVQ96EZ4 313 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 NMRAL1Q9HBL8 299 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 SORCS3Q9UPU3 1222 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 SLC12A8A0AV02 714 aa13.94□□□□□ -0.18
RTN3-210ENST00000540798 H2AFYO75367 372 aaKnown RBP13.94□□□□□ -0.18
RTN3-210ENST00000540798 VAPBO95292 243 aa13.94□□□□□ -0.18
RTN3-210ENST00000540798 PAPSS2O95340 614 aaPredicted RBP13.94□□□□□ -0.18
RTN3-210ENST00000540798 SLC35E2BP0CK96 405 aa13.94□□□□□ -0.18
RTN3-210ENST00000540798 ARPP19P56211 112 aa13.94□□□□□ -0.18
RTN3-210ENST00000540798 DUSP4Q13115 394 aa13.94□□□□□ -0.18
RTN3-210ENST00000540798 MARC1Q5VT66 337 aa13.94□□□□□ -0.18
RTN3-210ENST00000540798 MIB1Q86YT6 1006 aa13.94□□□□□ -0.18
RTN3-210ENST00000540798 SH3TC2Q8TF17 1288 aa13.94□□□□□ -0.18
RTN3-210ENST00000540798 PSMG2Q969U7 264 aa13.94□□□□□ -0.18
RTN3-210ENST00000540798 EBF4Q9BQW3 602 aa13.94□□□□□ -0.18
RTN3-210ENST00000540798 FAM96AQ9H5X1 160 aa13.94□□□□□ -0.18
RTN3-210ENST00000540798 RETREG1Q9H6L5 497 aa13.94□□□□□ -0.18
RTN3-210ENST00000540798 CCSER2Q9H7U1 834 aa13.94□□□□□ -0.18
RTN3-210ENST00000540798 TARM1B6A8C7 271 aa13.94□□□□□ -0.18
RTN3-210ENST00000540798 FKTNO75072 461 aa13.94□□□□□ -0.18
RTN3-210ENST00000540798 ELF1P32519 619 aa13.94□□□□□ -0.18
RTN3-210ENST00000540798 YBEYP58557 167 aaPredicted RBP13.94□□□□□ -0.18
RTN3-210ENST00000540798 PREPLQ4J6C6 727 aaPredicted RBP13.94□□□□□ -0.18
RTN3-210ENST00000540798 WASHC2DQ5SRD0 308 aa13.94□□□□□ -0.18
RTN3-210ENST00000540798 RINLQ6ZS11 566 aa13.94□□□□□ -0.18
RTN3-210ENST00000540798 DENND6AQ8IWF6 608 aa13.94□□□□□ -0.18
RTN3-210ENST00000540798 TNS4Q8IZW8 715 aa13.94□□□□□ -0.18
RTN3-210ENST00000540798 PGBD5Q8N414 524 aa13.94□□□□□ -0.18
RTN3-210ENST00000540798 NT5MQ9NPB1 228 aa13.94□□□□□ -0.18
RTN3-210ENST00000540798 MTRRQ9UBK8 725 aa13.94□□□□□ -0.18
RTN3-210ENST00000540798 SLC39A10Q9ULF5 831 aa13.94□□□□□ -0.18
RTN3-210ENST00000540798 E2F8A0AVK6 867 aa13.93□□□□□ -0.18
RTN3-210ENST00000540798 KLHL33A6NCF5 533 aa13.93□□□□□ -0.18
RTN3-210ENST00000540798 NT5C1B-RDH14C9J2C7 533 aa13.93□□□□□ -0.18
RTN3-210ENST00000540798 PAMP19021 973 aa13.93□□□□□ -0.18
RTN3-210ENST00000540798 SLC1A2P43004 574 aa13.93□□□□□ -0.18
RTN3-210ENST00000540798 ITGA9Q13797 1035 aa13.93□□□□□ -0.18
RTN3-210ENST00000540798 NAPRTQ6XQN6 538 aa13.93□□□□□ -0.18
RTN3-210ENST00000540798 GALNT7Q86SF2 657 aa13.93□□□□□ -0.18
RTN3-210ENST00000540798 CENPLQ8N0S6 344 aaPredicted RBP13.93□□□□□ -0.18
RTN3-210ENST00000540798 LRRC43Q8N309 656 aa13.93□□□□□ -0.18
RTN3-210ENST00000540798 FAM167BQ9BTA0 163 aa13.93□□□□□ -0.18
RTN3-210ENST00000540798 PDFQ9HBH1 243 aa13.93□□□□□ -0.18
RTN3-210ENST00000540798 OXSMQ9NWU1 459 aa13.93□□□□□ -0.18
RTN3-210ENST00000540798 ARMCX1Q9P291 453 aa13.93□□□□□ -0.18
RTN3-210ENST00000540798 MID2Q9UJV3 735 aa13.93□□□□□ -0.18
RTN3-210ENST00000540798 LOC285095A0A1B0GVY8 99 aa13.93□□□□□ -0.18
RTN3-210ENST00000540798 CCDC78A2IDD5 438 aa13.93□□□□□ -0.18
RTN3-210ENST00000540798 HEATR9A2RTY3 570 aa13.93□□□□□ -0.18
RTN3-210ENST00000540798 TBKBP1A7MCY6 615 aa13.93□□□□□ -0.18
RTN3-210ENST00000540798 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.93□□□□□ -0.18
RTN3-210ENST00000540798 GSC2O15499 205 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms