RNA–Protein interactions for RNA: ENST00000539941.6

COPS3-212, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2 BASIC

Gene COPS3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-212ENST00000539941 MOCS1Q9NZB8 636 aa17.13■□□□□ 0.33
COPS3-212ENST00000539941 UBP1Q9NZI7 540 aa17.13■□□□□ 0.33
COPS3-212ENST00000539941 UBA2Q9UBT2 640 aaPredicted RBP17.13■□□□□ 0.33
COPS3-212ENST00000539941 SEPT3Q9UH03 358 aa17.13■□□□□ 0.33
COPS3-212ENST00000539941 TBK1Q9UHD2 729 aa17.13■□□□□ 0.33
COPS3-212ENST00000539941 ZNF180Q9UJW8 692 aa17.13■□□□□ 0.33
COPS3-212ENST00000539941 FAM237BA0A1B0GVD1 139 aa17.12■□□□□ 0.33
COPS3-212ENST00000539941 FAM159BA6NKW6 160 aa17.12■□□□□ 0.33
COPS3-212ENST00000539941 H0Y626 953 aa17.12■□□□□ 0.33
COPS3-212ENST00000539941 INHBAP08476 426 aa17.12■□□□□ 0.33
COPS3-212ENST00000539941 TCF3P15923 654 aa17.12■□□□□ 0.33
COPS3-212ENST00000539941 ATP1A2P50993 1020 aa17.12■□□□□ 0.33
COPS3-212ENST00000539941 GRIN2CQ14957 1233 aa17.12■□□□□ 0.33
COPS3-212ENST00000539941 EFTUD2Q15029 972 aaKnown RBP eCLIP17.12■□□□□ 0.337e-10■■■■■ 51.8
COPS3-212ENST00000539941 RNF219Q5W0B1 726 aaPredicted RBP17.12■□□□□ 0.33
COPS3-212ENST00000539941 RNF43Q68DV7 783 aa17.12■□□□□ 0.33
COPS3-212ENST00000539941 PRPF39Q86UA1 669 aaKnown RBP17.12■□□□□ 0.33
COPS3-212ENST00000539941 TMEM135Q86UB9 458 aa17.12■□□□□ 0.33
COPS3-212ENST00000539941 BBS7Q8IWZ6 715 aa17.12■□□□□ 0.33
COPS3-212ENST00000539941 CYP4X1Q8N118 509 aa17.12■□□□□ 0.33
COPS3-212ENST00000539941 ARMC2Q8NEN0 867 aa17.12■□□□□ 0.33
COPS3-212ENST00000539941 SH3RF2Q8TEC5 729 aa17.12■□□□□ 0.33
COPS3-212ENST00000539941 PTCD2Q8WV60 388 aaKnown RBP17.12■□□□□ 0.33
COPS3-212ENST00000539941 DCAKDQ8WVC6 231 aa17.12■□□□□ 0.33
COPS3-212ENST00000539941 ZNF707Q96C28 371 aaPredicted RBP17.12■□□□□ 0.33
COPS3-212ENST00000539941 TIFAQ96CG3 184 aa17.12■□□□□ 0.33
COPS3-212ENST00000539941 MRGPRX2Q96LB1 330 aa17.12■□□□□ 0.33
COPS3-212ENST00000539941 SH3GL3Q99963 347 aa17.12■□□□□ 0.33
COPS3-212ENST00000539941 SPON2Q9BUD6 331 aa17.12■□□□□ 0.33
COPS3-212ENST00000539941 MUC3BQ9H195 1237 aa17.12■□□□□ 0.33
COPS3-212ENST00000539941 PER2O15055 1255 aa17.11■□□□□ 0.33
COPS3-212ENST00000539941 USP1O94782 785 aa17.11■□□□□ 0.33
COPS3-212ENST00000539941 CRADDP78560 199 aa17.11■□□□□ 0.33
COPS3-212ENST00000539941 ITKQ08881 620 aa17.11■□□□□ 0.33
COPS3-212ENST00000539941 OLIG2Q13516 323 aa17.11■□□□□ 0.33
COPS3-212ENST00000539941 DUSP6Q16828 381 aa17.11■□□□□ 0.33
COPS3-212ENST00000539941 POTEHQ6S545 545 aa17.11■□□□□ 0.33
COPS3-212ENST00000539941 RANBP10Q6VN20 620 aa17.11■□□□□ 0.33
COPS3-212ENST00000539941 TRABD2AQ86V40 505 aa17.11■□□□□ 0.33
COPS3-212ENST00000539941 SLC26A11Q86WA9 606 aa17.11■□□□□ 0.33
COPS3-212ENST00000539941 CARNMT1Q8N4J0 409 aa17.11■□□□□ 0.33
COPS3-212ENST00000539941 ARRDC2Q8TBH0 407 aa17.11■□□□□ 0.33
COPS3-212ENST00000539941 SGSM3Q96HU1 749 aa17.11■□□□□ 0.33
COPS3-212ENST00000539941 PSKH2Q96QS6 385 aa17.11■□□□□ 0.33
COPS3-212ENST00000539941 FICDQ9BVA6 458 aa17.11■□□□□ 0.33
COPS3-212ENST00000539941 ZNF576Q9H609 170 aa17.11■□□□□ 0.33
COPS3-212ENST00000539941 TLE6Q9H808 572 aa17.11■□□□□ 0.33
COPS3-212ENST00000539941 ARNT2Q9HBZ2 717 aa17.11■□□□□ 0.33
COPS3-212ENST00000539941 SOX13Q9UN79 622 aa17.11■□□□□ 0.33
COPS3-212ENST00000539941 NOTCH4Q99466 2003 aa17.11■□□□□ 0.33
COPS3-212ENST00000539941 IQANK1A0A1B0GTG1 560 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 CCDC195A0A1B0GUA6 201 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 ANKRD33BA6NCL7 494 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 PMPCBO75439 489 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 CES1P23141 567 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 MDH1P40925 334 aaKnown RBP17.1■□□□□ 0.33
COPS3-212ENST00000539941 WNT3AP56704 352 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 NIPAL4Q0D2K0 466 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 CDH18Q13634 790 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 SLC5A9Q2M3M2 681 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 PPP2R2DQ66LE6 453 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 DENND5AQ6IQ26 1287 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 ADGRD2Q7Z7M1 963 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 PGBD5Q8N414 524 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 MYLIPQ8WY64 445 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 CDKL2Q92772 493 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 CDCA3Q99618 268 aaPredicted RBP17.1■□□□□ 0.33
COPS3-212ENST00000539941 MGME1Q9BQP7 344 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 NKX2-4Q9H2Z4 354 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 MRM3Q9HC36 420 aaKnown RBP17.1■□□□□ 0.33
COPS3-212ENST00000539941 SPATS2LQ9NUQ6 558 aaKnown RBP17.1■□□□□ 0.33
COPS3-212ENST00000539941 TDP1Q9NUW8 608 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 PIH1D1Q9NWS0 290 aaKnown RBP17.1■□□□□ 0.33
COPS3-212ENST00000539941 RPS6KL1Q9Y6S9 549 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 MYO7AQ13402 2215 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 DOCK6Q96HP0 2047 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 CYBBP04839 570 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 MMP2P08253 660 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 KRT15P19012 456 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 CD86P42081 329 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 CLNS1AP54105 237 aaKnown RBP17.1■□□□□ 0.33
COPS3-212ENST00000539941 DSC2Q02487 901 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 PCID2Q5JVF3 399 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 CERCAMQ5T4B2 595 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 LGSNQ5TDP6 509 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 GRASPQ7Z6J2 395 aaPredicted RBP17.1■□□□□ 0.33
COPS3-212ENST00000539941 MFN1Q8IWA4 741 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 CTAGE3PQ8IX95 158 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.1■□□□□ 0.33
COPS3-212ENST00000539941 PPM1NQ8N819 430 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 DCAF4L2Q8NA75 395 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 DDI1Q8WTU0 396 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 USP13Q92995 863 aaPredicted RBP17.1■□□□□ 0.33
COPS3-212ENST00000539941 RSRC1Q96IZ7 334 aaKnown RBP17.1■□□□□ 0.33
COPS3-212ENST00000539941 APOL2Q9BQE5 337 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 FEM1AQ9BSK4 669 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 KIFC1Q9BW19 673 aa17.1■□□□□ 0.33
COPS3-212ENST00000539941 CINPQ9BW66 212 aaPredicted RBP17.1■□□□□ 0.33
COPS3-212ENST00000539941 PRUNE2Q8WUY3 3088 aa17.09■□□□□ 0.33
COPS3-212ENST00000539941 ATG2AQ2TAZ0 1938 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms