RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 HPCAL4Q9UM19 191 aa13.19□□□□□ -0.3
CCDC42-202ENST00000539522 ATP8A1Q9Y2Q0 1164 aa13.19□□□□□ -0.3
CCDC42-202ENST00000539522 NUMA1Q14980 2115 aa13.18□□□□□ -0.3
CCDC42-202ENST00000539522 CEP192Q8TEP8 1941 aa13.18□□□□□ -0.3
CCDC42-202ENST00000539522 SPINT1O43278 529 aa13.18□□□□□ -0.3
CCDC42-202ENST00000539522 CTIFO43310 598 aaKnown RBP13.18□□□□□ -0.3
CCDC42-202ENST00000539522 LAMTOR5O43504 91 aa13.18□□□□□ -0.3
CCDC42-202ENST00000539522 TJP3O95049 919 aa13.18□□□□□ -0.3
CCDC42-202ENST00000539522 APBB3O95704 486 aa13.18□□□□□ -0.3
CCDC42-202ENST00000539522 GSRP00390 522 aa13.18□□□□□ -0.3
CCDC42-202ENST00000539522 FGGP02679 453 aa13.18□□□□□ -0.3
CCDC42-202ENST00000539522 PTPN3P26045 913 aa13.18□□□□□ -0.3
CCDC42-202ENST00000539522 RBL1P28749 1068 aa13.18□□□□□ -0.3
CCDC42-202ENST00000539522 CD68P34810 354 aaPredicted RBP13.18□□□□□ -0.3
CCDC42-202ENST00000539522 GDF10P55107 478 aa13.18□□□□□ -0.3
CCDC42-202ENST00000539522 SRSF5Q13243 272 aaKnown RBP13.18□□□□□ -0.3
CCDC42-202ENST00000539522 HNRNPDQ14103 355 aaKnown RBP13.18□□□□□ -0.3
CCDC42-202ENST00000539522 ELAVL3Q14576 367 aaKnown RBP13.18□□□□□ -0.3
CCDC42-202ENST00000539522 RFTN1Q14699 578 aaPredicted RBP13.18□□□□□ -0.3
CCDC42-202ENST00000539522 PDK1Q15118 436 aa13.18□□□□□ -0.3
CCDC42-202ENST00000539522 OASLQ15646 514 aaKnown RBP13.18□□□□□ -0.3
CCDC42-202ENST00000539522 LONRF2Q1L5Z9 754 aa13.18□□□□□ -0.3
CCDC42-202ENST00000539522 MAP7D1Q3KQU3 841 aa13.18□□□□□ -0.3
CCDC42-202ENST00000539522 TMPRSS6Q8IU80 811 aa13.18□□□□□ -0.3
CCDC42-202ENST00000539522 LRRC49Q8IUZ0 686 aa13.18□□□□□ -0.3
CCDC42-202ENST00000539522 MMAAQ8IVH4 418 aaKnown RBP13.18□□□□□ -0.3
CCDC42-202ENST00000539522 CAMKK1Q8N5S9 505 aa13.18□□□□□ -0.3
CCDC42-202ENST00000539522 FAM160A2Q8N612 972 aaPredicted RBP13.18□□□□□ -0.3
CCDC42-202ENST00000539522 PRELID2Q8N945 189 aa13.18□□□□□ -0.3
CCDC42-202ENST00000539522 SPATA4Q8NEY3 305 aa13.18□□□□□ -0.3
CCDC42-202ENST00000539522 TSTD1Q8NFU3 115 aa13.18□□□□□ -0.3
CCDC42-202ENST00000539522 HMGB4Q8WW32 186 aa13.18□□□□□ -0.3
CCDC42-202ENST00000539522 MAIP1Q8WWC4 291 aa13.18□□□□□ -0.3
CCDC42-202ENST00000539522 CASKIN2Q8WXE0 1202 aa13.18□□□□□ -0.3
CCDC42-202ENST00000539522 UBXN4Q92575 508 aa13.18□□□□□ -0.3
CCDC42-202ENST00000539522 P3H4Q92791 437 aa13.18□□□□□ -0.3
CCDC42-202ENST00000539522 ARRDC3Q96B67 414 aa13.18□□□□□ -0.3
CCDC42-202ENST00000539522 USP36Q9P275 1121 aaKnown RBP13.18□□□□□ -0.3
CCDC42-202ENST00000539522 SUN2Q9UH99 717 aa13.18□□□□□ -0.3
CCDC42-202ENST00000539522 EVLQ9UI08 416 aaPredicted RBP13.18□□□□□ -0.3
CCDC42-202ENST00000539522 MBD1Q9UIS9 605 aaPredicted RBP13.18□□□□□ -0.3
CCDC42-202ENST00000539522 FBXO4Q9UKT5 387 aa13.18□□□□□ -0.3
CCDC42-202ENST00000539522 DNPEPQ9ULA0 475 aa13.18□□□□□ -0.3
CCDC42-202ENST00000539522 SLC8A2Q9UPR5 921 aa13.18□□□□□ -0.3
CCDC42-202ENST00000539522 BPTFQ12830 3046 aa13.18□□□□□ -0.3
CCDC42-202ENST00000539522 LRRK1Q38SD2 2015 aa13.17□□□□□ -0.3
CCDC42-202ENST00000539522 MID1O15344 667 aa13.17□□□□□ -0.3
CCDC42-202ENST00000539522 LIASO43766 372 aa13.17□□□□□ -0.3
CCDC42-202ENST00000539522 BNIP3LO60238 219 aa13.17□□□□□ -0.3
CCDC42-202ENST00000539522 LEFTY1O75610 366 aa13.17□□□□□ -0.3
CCDC42-202ENST00000539522 JCHAINP01591 159 aa13.17□□□□□ -0.3
CCDC42-202ENST00000539522 CCNB1P14635 433 aa13.17□□□□□ -0.3
CCDC42-202ENST00000539522 MX2P20592 715 aa13.17□□□□□ -0.3
CCDC42-202ENST00000539522 CHRNA3P32297 505 aa13.17□□□□□ -0.3
CCDC42-202ENST00000539522 MMP13P45452 471 aa13.17□□□□□ -0.3
CCDC42-202ENST00000539522 GEMIN4P57678 1058 aaKnown RBP13.17□□□□□ -0.3
CCDC42-202ENST00000539522 EIF3EP60228 445 aaKnown RBP13.17□□□□□ -0.3
CCDC42-202ENST00000539522 RHOAP61586 193 aa13.17□□□□□ -0.3
CCDC42-202ENST00000539522 ZNF33AQ06730 810 aa13.17□□□□□ -0.3
CCDC42-202ENST00000539522 AP1B1Q10567 949 aa13.17□□□□□ -0.3
CCDC42-202ENST00000539522 XRCC4Q13426 336 aa13.17□□□□□ -0.3
CCDC42-202ENST00000539522 CST6Q15828 149 aa13.17□□□□□ -0.3
CCDC42-202ENST00000539522 MYLK3Q32MK0 819 aa13.17□□□□□ -0.3
CCDC42-202ENST00000539522 POM121L1PQ3SYA9 428 aa13.17□□□□□ -0.3
CCDC42-202ENST00000539522 SLC45A4Q5BKX6 768 aa13.17□□□□□ -0.3
CCDC42-202ENST00000539522 ARSIQ5FYB1 569 aa13.17□□□□□ -0.3
CCDC42-202ENST00000539522 HEATR6Q6AI08 1181 aaKnown RBP13.17□□□□□ -0.3
CCDC42-202ENST00000539522 SDE2Q6IQ49 451 aa13.17□□□□□ -0.3
CCDC42-202ENST00000539522 TTC27Q6P3X3 843 aa13.17□□□□□ -0.3
CCDC42-202ENST00000539522 PRUNE1Q86TP1 453 aa13.17□□□□□ -0.3
CCDC42-202ENST00000539522 MMGT1Q8N4V1 131 aa13.17□□□□□ -0.3
CCDC42-202ENST00000539522 GLIS1Q8NBF1 620 aa13.17□□□□□ -0.3
CCDC42-202ENST00000539522 ZBTB44Q8NCP5 570 aa13.17□□□□□ -0.3
CCDC42-202ENST00000539522 CCNYQ8ND76 341 aa13.17□□□□□ -0.3
CCDC42-202ENST00000539522 C1orf54Q8WWF1 131 aa13.17□□□□□ -0.3
CCDC42-202ENST00000539522 RLN3Q8WXF3 142 aa13.17□□□□□ -0.3
CCDC42-202ENST00000539522 TADA1Q96BN2 335 aa13.17□□□□□ -0.3
CCDC42-202ENST00000539522 NOD2Q9HC29 1040 aa13.17□□□□□ -0.3
CCDC42-202ENST00000539522 NT5MQ9NPB1 228 aa13.17□□□□□ -0.3
CCDC42-202ENST00000539522 RAPGEFL1Q9UHV5 662 aa13.17□□□□□ -0.3
CCDC42-202ENST00000539522 DOCK9Q9BZ29 2069 aa13.16□□□□□ -0.3
CCDC42-202ENST00000539522 BCLAF3A2AJT9 711 aaKnown RBP13.16□□□□□ -0.3
CCDC42-202ENST00000539522 CCDC188H7C350 402 aa13.16□□□□□ -0.3
CCDC42-202ENST00000539522 KRIT1O00522 736 aa13.16□□□□□ -0.3
CCDC42-202ENST00000539522 TRAFD1O14545 582 aaPredicted RBP13.16□□□□□ -0.3
CCDC42-202ENST00000539522 ALOX15BO15296 676 aa13.16□□□□□ -0.3
CCDC42-202ENST00000539522 ZBTB24O43167 697 aaPredicted RBP13.16□□□□□ -0.3
CCDC42-202ENST00000539522 HRO43593 1189 aa13.16□□□□□ -0.3
CCDC42-202ENST00000539522 SYNCRIPO60506 623 aaKnown RBP13.16□□□□□ -0.3
CCDC42-202ENST00000539522 LILRB5O75023 590 aa13.16□□□□□ -0.3
CCDC42-202ENST00000539522 PIGNO95427 931 aa13.16□□□□□ -0.3
CCDC42-202ENST00000539522 IGLV3-19P01714 112 aa13.16□□□□□ -0.3
CCDC42-202ENST00000539522 RBP3P10745 1247 aa13.16□□□□□ -0.3
CCDC42-202ENST00000539522 BCKDHBP21953 392 aa13.16□□□□□ -0.3
CCDC42-202ENST00000539522 NNMTP40261 264 aa13.16□□□□□ -0.3
CCDC42-202ENST00000539522 PSMD8P48556 350 aa13.16□□□□□ -0.3
CCDC42-202ENST00000539522 CSNK1DP48730 415 aa13.16□□□□□ -0.3
CCDC42-202ENST00000539522 TPMTP51580 245 aa13.16□□□□□ -0.3
CCDC42-202ENST00000539522 TAS2R38P59533 333 aa13.16□□□□□ -0.3
CCDC42-202ENST00000539522 DSC2Q02487 901 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms