RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 HCAR3P49019 387 aa11.75□□□□□ -0.53
RTN3-209ENST00000538995 ARRB1P49407 418 aaPredicted RBP11.75□□□□□ -0.53
RTN3-209ENST00000538995 FAM193AP78312 1265 aa11.75□□□□□ -0.53
RTN3-209ENST00000538995 TRIM14Q14142 442 aa11.75□□□□□ -0.53
RTN3-209ENST00000538995 PIGHQ14442 188 aaPredicted RBP11.75□□□□□ -0.53
RTN3-209ENST00000538995 STAT4Q14765 748 aa11.75□□□□□ -0.53
RTN3-209ENST00000538995 ZNF284Q2VY69 593 aa11.75□□□□□ -0.53
RTN3-209ENST00000538995 TMEM259Q4ZIN3 620 aa11.75□□□□□ -0.53
RTN3-209ENST00000538995 ZNF805Q5CZA5 627 aa11.75□□□□□ -0.53
RTN3-209ENST00000538995 KIAA1161Q6NSJ0 714 aa11.75□□□□□ -0.53
RTN3-209ENST00000538995 FBXL19Q6PCT2 694 aa11.75□□□□□ -0.53
RTN3-209ENST00000538995 RFX8Q6ZV50 586 aa11.75□□□□□ -0.53
RTN3-209ENST00000538995 CYP4V2Q6ZWL3 525 aaPredicted RBP11.75□□□□□ -0.53
RTN3-209ENST00000538995 ZNF354CQ86Y25 554 aa11.75□□□□□ -0.53
RTN3-209ENST00000538995 NIPA2Q8N8Q9 360 aa11.75□□□□□ -0.53
RTN3-209ENST00000538995 FAM174AQ8TBP5 190 aa11.75□□□□□ -0.53
RTN3-209ENST00000538995 SETD7Q8WTS6 366 aaKnown RBP11.75□□□□□ -0.53
RTN3-209ENST00000538995 ARHGEF26Q96DR7 871 aa11.75□□□□□ -0.53
RTN3-209ENST00000538995 PEBP4Q96S96 227 aa11.75□□□□□ -0.53
RTN3-209ENST00000538995 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.75□□□□□ -0.53
RTN3-209ENST00000538995 TRIM7Q9C029 511 aa11.75□□□□□ -0.53
RTN3-209ENST00000538995 DHX35Q9H5Z1 703 aaKnown RBP11.75□□□□□ -0.53
RTN3-209ENST00000538995 LRRC19Q9H756 370 aa11.75□□□□□ -0.53
RTN3-209ENST00000538995 APOBEC2Q9Y235 224 aaKnown RBP11.75□□□□□ -0.53
RTN3-209ENST00000538995 MFHAS1Q9Y4C4 1052 aa11.75□□□□□ -0.53
RTN3-209ENST00000538995 NEUROG3Q9Y4Z2 214 aa11.75□□□□□ -0.53
RTN3-209ENST00000538995 ACTL7AQ9Y615 435 aa11.75□□□□□ -0.53
RTN3-209ENST00000538995 CABIN1Q9Y6J0 2220 aa11.74□□□□□ -0.53
RTN3-209ENST00000538995 ARHGAP42A6NI28 874 aa11.74□□□□□ -0.53
RTN3-209ENST00000538995 RNF103O00237 685 aa11.74□□□□□ -0.53
RTN3-209ENST00000538995 WNT9AO14904 365 aa11.74□□□□□ -0.53
RTN3-209ENST00000538995 IGSF6O95976 241 aa11.74□□□□□ -0.53
RTN3-209ENST00000538995 FTH1P19P0C7X4 201 aa11.74□□□□□ -0.53
RTN3-209ENST00000538995 HNRNPA2B1P22626 353 aaKnown RBP11.74□□□□□ -0.53
RTN3-209ENST00000538995 EPHA8P29322 1005 aaPredicted RBP11.74□□□□□ -0.53
RTN3-209ENST00000538995 AKT2P31751 481 aa11.74□□□□□ -0.53
RTN3-209ENST00000538995 RXRGP48443 463 aa11.74□□□□□ -0.53
RTN3-209ENST00000538995 RHOAP61586 193 aa11.74□□□□□ -0.53
RTN3-209ENST00000538995 RPS21P63220 83 aaKnown RBP11.74□□□□□ -0.53
RTN3-209ENST00000538995 RAD51Q06609 339 aa11.74□□□□□ -0.53
RTN3-209ENST00000538995 GRM3Q14832 879 aa11.74□□□□□ -0.53
RTN3-209ENST00000538995 DPYSL2Q16555 572 aa11.74□□□□□ -0.53
RTN3-209ENST00000538995 CA9Q16790 459 aa11.74□□□□□ -0.53
RTN3-209ENST00000538995 MYLK3Q32MK0 819 aa11.74□□□□□ -0.53
RTN3-209ENST00000538995 PARS2Q7L3T8 475 aaKnown RBP11.74□□□□□ -0.53
RTN3-209ENST00000538995 RAB44Q7Z6P3 723 aaPredicted RBP11.74□□□□□ -0.53
RTN3-209ENST00000538995 DNAAF5Q86Y56 855 aa11.74□□□□□ -0.53
RTN3-209ENST00000538995 RYBPQ8N488 228 aaPredicted RBP11.74□□□□□ -0.53
RTN3-209ENST00000538995 RHBDD1Q8TEB9 315 aa11.74□□□□□ -0.53
RTN3-209ENST00000538995 ADAMTS14Q8WXS8 1223 aa11.74□□□□□ -0.53
RTN3-209ENST00000538995 KCTD15Q96SI1 283 aaPredicted RBP11.74□□□□□ -0.53
RTN3-209ENST00000538995 XPO4Q9C0E2 1151 aaKnown RBP11.74□□□□□ -0.53
RTN3-209ENST00000538995 ZWILCHQ9H900 591 aa11.74□□□□□ -0.53
RTN3-209ENST00000538995 PDFQ9HBH1 243 aa11.74□□□□□ -0.53
RTN3-209ENST00000538995 GPATCH2LQ9NWQ4 482 aa11.74□□□□□ -0.53
RTN3-209ENST00000538995 MYO1AQ9UBC5 1043 aa11.74□□□□□ -0.53
RTN3-209ENST00000538995 UBA2Q9UBT2 640 aaPredicted RBP11.74□□□□□ -0.53
RTN3-209ENST00000538995 PCSK1NQ9UHG2 260 aa11.74□□□□□ -0.53
RTN3-209ENST00000538995 FADS3Q9Y5Q0 445 aa11.74□□□□□ -0.53
RTN3-209ENST00000538995 ZFHX4Q86UP3 3567 aa11.74□□□□□ -0.53
RTN3-209ENST00000538995 A0A087X0T9 212 aa11.73□□□□□ -0.53
RTN3-209ENST00000538995 C16orf96A6NNT2 1141 aa11.73□□□□□ -0.53
RTN3-209ENST00000538995 KRIT1O00522 736 aa11.73□□□□□ -0.53
RTN3-209ENST00000538995 DAPK3O43293 454 aa11.73□□□□□ -0.53
RTN3-209ENST00000538995 TNFSF14O43557 240 aa11.73□□□□□ -0.53
RTN3-209ENST00000538995 TSPAN6O43657 245 aa11.73□□□□□ -0.53
RTN3-209ENST00000538995 PRAMEF11O60813 436 aa11.73□□□□□ -0.53
RTN3-209ENST00000538995 PLXNA2O75051 1894 aa11.73□□□□□ -0.53
RTN3-209ENST00000538995 DKK1O94907 266 aa11.73□□□□□ -0.53
RTN3-209ENST00000538995 PCDH8O95206 1070 aa11.73□□□□□ -0.53
RTN3-209ENST00000538995 CYP1A2P05177 515 aa11.73□□□□□ -0.53
RTN3-209ENST00000538995 FAM228BP0C875 321 aa11.73□□□□□ -0.53
RTN3-209ENST00000538995 CASP14P31944 242 aa11.73□□□□□ -0.53
RTN3-209ENST00000538995 MAP1BP46821 2468 aaKnown RBP11.73□□□□□ -0.53
RTN3-209ENST00000538995 SUOXP51687 545 aa11.73□□□□□ -0.53
RTN3-209ENST00000538995 BOLA3Q53S33 107 aa11.73□□□□□ -0.53
RTN3-209ENST00000538995 AFMIDQ63HM1 303 aa11.73□□□□□ -0.53
RTN3-209ENST00000538995 SPECC1LQ69YQ0 1117 aa11.73□□□□□ -0.53
RTN3-209ENST00000538995 ALKBH5Q6P6C2 394 aaKnown RBP11.73□□□□□ -0.53
RTN3-209ENST00000538995 LZTR1Q8N653 840 aa11.73□□□□□ -0.53
RTN3-209ENST00000538995 OR6K2Q8NGY2 324 aa11.73□□□□□ -0.53
RTN3-209ENST00000538995 SAP25Q8TEE9 199 aa11.73□□□□□ -0.53
RTN3-209ENST00000538995 CPLX3Q8WVH0 158 aa11.73□□□□□ -0.53
RTN3-209ENST00000538995 TEKT4Q8WW24 435 aa11.73□□□□□ -0.53
RTN3-209ENST00000538995 ASB12Q8WXK4 309 aa11.73□□□□□ -0.53
RTN3-209ENST00000538995 VOPP1Q96AW1 172 aa11.73□□□□□ -0.53
RTN3-209ENST00000538995 FEM1CQ96JP0 617 aa11.73□□□□□ -0.53
RTN3-209ENST00000538995 SCNM1Q9BWG6 230 aa11.73□□□□□ -0.53
RTN3-209ENST00000538995 CPEB1Q9BZB8 566 aaKnown RBP11.73□□□□□ -0.53
RTN3-209ENST00000538995 KLC2Q9H0B6 622 aa11.73□□□□□ -0.53
RTN3-209ENST00000538995 THAP2Q9H0W7 228 aa11.73□□□□□ -0.53
RTN3-209ENST00000538995 TSPY26PQ9H489 355 aa11.73□□□□□ -0.53
RTN3-209ENST00000538995 DKK3Q9UBP4 350 aa11.73□□□□□ -0.53
RTN3-209ENST00000538995 IP6K2Q9UHH9 426 aa11.73□□□□□ -0.53
RTN3-209ENST00000538995 NENFQ9UMX5 172 aa11.73□□□□□ -0.53
RTN3-209ENST00000538995 ZFR2Q9UPR6 939 aaKnown RBP11.73□□□□□ -0.53
RTN3-209ENST00000538995 USP24Q9UPU5 2620 aa11.72□□□□□ -0.53
RTN3-209ENST00000538995 FAM221BA6H8Z2 402 aa11.72□□□□□ -0.53
RTN3-209ENST00000538995 H3BRJ5 948 aa11.72□□□□□ -0.53
RTN3-209ENST00000538995 KCNK3O14649 394 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms