RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 RAP1GDS1P52306 607 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 IRX4P78413 519 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 MXRA7P84157 204 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 PRKAA1Q13131 559 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 ITGA9Q13797 1035 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 SEPT6Q14141 434 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 RCN2Q14257 317 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 ZNF235Q14590 738 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 RFTN1Q14699 578 aaPredicted RBP6.71□□□□□ -1.34
USP28-206ENST00000538224 GRM3Q14832 879 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 POU6F1Q14863 301 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 POLD3Q15054 466 aaPredicted RBP6.71□□□□□ -1.34
USP28-206ENST00000538224 DDR2Q16832 855 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 FAM83EQ2M2I3 478 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 DEFB115Q30KQ5 88 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 TRMT5Q32P41 509 aaKnown RBP6.71□□□□□ -1.34
USP28-206ENST00000538224 MGAT5BQ3V5L5 792 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 C5orf22Q49AR2 442 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 C10orf120Q5SQS8 335 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 TSTD2Q5T7W7 516 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 LHX8Q68G74 356 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 DENND5AQ6IQ26 1287 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 LRRC8EQ6NSJ5 796 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 C16orf46Q6P387 395 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 KLC3Q6P597 504 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 KLHDC10Q6PID8 442 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 ARHGAP36Q6ZRI8 547 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 ZCCHC23Q6ZST2 131 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 PIWIL4Q7Z3Z4 852 aaKnown RBP6.71□□□□□ -1.34
USP28-206ENST00000538224 NET1Q7Z628 596 aaPredicted RBP6.71□□□□□ -1.34
USP28-206ENST00000538224 ALYREFQ86V81 257 aaKnown RBP6.71□□□□□ -1.34
USP28-206ENST00000538224 ZNF354CQ86Y25 554 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 ZNF683Q8IZ20 524 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 SPATA22Q8NHS9 363 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 GIMAP7Q8NHV1 300 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 TTC8Q8TAM2 541 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 STYXQ8WUJ0 223 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 UTP4Q969X6 686 aaKnown RBP6.71□□□□□ -1.34
USP28-206ENST00000538224 AZIN2Q96A70 460 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 PLD4Q96BZ4 506 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 IFT43Q96FT9 208 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 HMCESQ96FZ2 354 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 FEM1CQ96JP0 617 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 FAR2Q96K12 515 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 SCYL1Q96KG9 808 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 MRGPRX2Q96LB1 330 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 RPRD1AQ96P16 312 aaPredicted RBP6.71□□□□□ -1.34
USP28-206ENST00000538224 CASD1Q96PB1 797 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 NUDCD1Q96RS6 583 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 ZIC5Q96T25 663 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 MYCBPQ99417 103 aaPredicted RBP6.71□□□□□ -1.34
USP28-206ENST00000538224 AGAP2Q99490 1192 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 SEPT5Q99719 369 aaPredicted RBP6.71□□□□□ -1.34
USP28-206ENST00000538224 DDX50Q9BQ39 737 aaKnown RBP6.71□□□□□ -1.34
USP28-206ENST00000538224 APOL2Q9BQE5 337 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 TTPALQ9BTX7 342 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 CCDC106Q9BWC9 280 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 CADM1Q9BY67 442 aaKnown RBP6.71□□□□□ -1.34
USP28-206ENST00000538224 PPP1R12CQ9BZL4 782 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 DRC3Q9H069 523 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 ILKAPQ9H0C8 392 aaPredicted RBP6.71□□□□□ -1.34
USP28-206ENST00000538224 CDH19Q9H159 772 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 MAGEH1Q9H213 219 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 MRPL46Q9H2W6 279 aaKnown RBP6.71□□□□□ -1.34
USP28-206ENST00000538224 GPBP1L1Q9HC44 474 aaPredicted RBP6.71□□□□□ -1.34
USP28-206ENST00000538224 NT5MQ9NPB1 228 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 TREX1Q9NSU2 369 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 OXSMQ9NWU1 459 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 MARCH5Q9NX47 278 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 UBP1Q9NZI7 540 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 STOML1Q9UBI4 398 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 DNAJB4Q9UDY4 337 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 MARCOQ9UEW3 520 aaPredicted RBP6.71□□□□□ -1.34
USP28-206ENST00000538224 DNMT3LQ9UJW3 386 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 RIMKLBQ9ULI2 386 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.71□□□□□ -1.34
USP28-206ENST00000538224 C15orf41Q9Y2V0 281 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 RAP2CQ9Y3L5 183 aa6.71□□□□□ -1.34
USP28-206ENST00000538224 SLC12A8A0AV02 714 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 SLC38A8A6NNN8 435 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 G3V2L1 256 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 ENPP3O14638 875 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 HDAC3O15379 428 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 TBC1D4O60343 1298 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 NPHS1O60500 1241 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 TLR5O60602 858 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 PRAMEF11O60813 436 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 PEX11AO75192 247 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 LATS1O95835 1130 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 PEX11BO96011 259 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 ENO1P06733 434 aaKnown RBP6.7□□□□□ -1.34
USP28-206ENST00000538224 RBP1P09455 135 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 SLC35E2BP0CK96 405 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 TPH1P17752 444 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 TACR2P21452 398 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 GRK4P32298 578 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 PGM1P36871 562 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 ARCN1P48444 511 aaKnown RBP6.7□□□□□ -1.34
USP28-206ENST00000538224 PPP3CCP48454 512 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 SLC11A1P49279 550 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms