RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 PIGHQ14442 188 aaPredicted RBP15.03■□□□□ -0
USP28-204ENST00000537642 CYTH1Q15438 398 aa15.03■□□□□ -0
USP28-204ENST00000537642 SMTNL2Q2TAL5 461 aa15.03■□□□□ -0
USP28-204ENST00000537642 ASTE1Q2TB18 679 aaPredicted RBP15.03■□□□□ -0
USP28-204ENST00000537642 MYLK3Q32MK0 819 aa15.03■□□□□ -0
USP28-204ENST00000537642 SETMARQ53H47 684 aaPredicted RBP15.03■□□□□ -0
USP28-204ENST00000537642 INO80DQ53TQ3 878 aaPredicted RBP15.03■□□□□ -0
USP28-204ENST00000537642 AFMIDQ63HM1 303 aa15.03■□□□□ -0
USP28-204ENST00000537642 NEK5Q6P3R8 708 aa15.03■□□□□ -0
USP28-204ENST00000537642 DBX2Q6ZNG2 339 aa15.03■□□□□ -0
USP28-204ENST00000537642 PARS2Q7L3T8 475 aaKnown RBP15.03■□□□□ -0
USP28-204ENST00000537642 ARHGAP12Q8IWW6 846 aa15.03■□□□□ -0
USP28-204ENST00000537642 NIPA2Q8N8Q9 360 aa15.03■□□□□ -0
USP28-204ENST00000537642 CASKIN2Q8WXE0 1202 aa15.03■□□□□ -0
USP28-204ENST00000537642 KLK6Q92876 244 aa15.03■□□□□ -0
USP28-204ENST00000537642 LRIG1Q96JA1 1093 aa15.03■□□□□ -0
USP28-204ENST00000537642 ZWILCHQ9H900 591 aa15.03■□□□□ -0
USP28-204ENST00000537642 PDFQ9HBH1 243 aa15.03■□□□□ -0
USP28-204ENST00000537642 DONSONQ9NYP3 566 aa15.03■□□□□ -0
USP28-204ENST00000537642 CWC15Q9P013 229 aaKnown RBP15.03■□□□□ -0
USP28-204ENST00000537642 IP6K2Q9UHH9 426 aa15.03■□□□□ -0
USP28-204ENST00000537642 ZFR2Q9UPR6 939 aaKnown RBP15.03■□□□□ -0
USP28-204ENST00000537642 DMTF1Q9Y222 760 aa15.03■□□□□ -0
USP28-204ENST00000537642 PCDHGB2Q9Y5G2 931 aa15.03■□□□□ -0
USP28-204ENST00000537642 J3KR12 359 aa15.02■□□□□ -0
USP28-204ENST00000537642 KRIT1O00522 736 aa15.02■□□□□ -0
USP28-204ENST00000537642 DAPK3O43293 454 aa15.02■□□□□ -0
USP28-204ENST00000537642 CBFA2T3O75081 653 aa15.02■□□□□ -0
USP28-204ENST00000537642 POP4O95707 220 aaKnown RBP15.02■□□□□ -0
USP28-204ENST00000537642 HCAR3P49019 387 aa15.02■□□□□ -0
USP28-204ENST00000537642 PAPOLAP51003 745 aaKnown RBP15.02■□□□□ -0
USP28-204ENST00000537642 ZNF135P52742 658 aaPredicted RBP15.02■□□□□ -0
USP28-204ENST00000537642 SIM1P81133 766 aaPredicted RBP15.02■□□□□ -0
USP28-204ENST00000537642 MAPK8IP2Q13387 824 aaPredicted RBP15.02■□□□□ -0
USP28-204ENST00000537642 DPYSL2Q16555 572 aa15.02■□□□□ -0
USP28-204ENST00000537642 SLC18A3Q16572 532 aa15.02■□□□□ -0
USP28-204ENST00000537642 ZNF284Q2VY69 593 aa15.02■□□□□ -0
USP28-204ENST00000537642 BOLA3Q53S33 107 aa15.02■□□□□ -0
USP28-204ENST00000537642 ZNF805Q5CZA5 627 aa15.02■□□□□ -0
USP28-204ENST00000537642 TXNRD3NBQ6F5E7 133 aa15.02■□□□□ -0
USP28-204ENST00000537642 FBXL19Q6PCT2 694 aa15.02■□□□□ -0
USP28-204ENST00000537642 HORMAD1Q86X24 394 aa15.02■□□□□ -0
USP28-204ENST00000537642 NPWQ8N729 165 aa15.02■□□□□ -0
USP28-204ENST00000537642 SKA1Q96BD8 255 aa15.02■□□□□ -0
USP28-204ENST00000537642 GDAP1L1Q96MZ0 367 aa15.02■□□□□ -0
USP28-204ENST00000537642 LHX3Q9UBR4 397 aa15.02■□□□□ -0
USP28-204ENST00000537642 UBA2Q9UBT2 640 aaPredicted RBP15.02■□□□□ -0
USP28-204ENST00000537642 PCOLCE2Q9UKZ9 415 aa15.02■□□□□ -0
USP28-204ENST00000537642 CA5BQ9Y2D0 317 aa15.02■□□□□ -0
USP28-204ENST00000537642 FADS3Q9Y5Q0 445 aa15.02■□□□□ -0
USP28-204ENST00000537642 SSU72P8A0A1W2PR75 194 aa15.01□□□□□ -0.01
USP28-204ENST00000537642 ARHGAP42A6NI28 874 aa15.01□□□□□ -0.01
USP28-204ENST00000537642 C16orf96A6NNT2 1141 aa15.01□□□□□ -0.01
USP28-204ENST00000537642 PRAMEF26H0Y7S4 382 aa15.01□□□□□ -0.01
USP28-204ENST00000537642 TLR4O00206 839 aa15.01□□□□□ -0.01
USP28-204ENST00000537642 SLC31A1O15431 190 aa15.01□□□□□ -0.01
USP28-204ENST00000537642 INSIG1O15503 277 aa15.01□□□□□ -0.01
USP28-204ENST00000537642 PRAMEF11O60813 436 aa15.01□□□□□ -0.01
USP28-204ENST00000537642 MFAP3LO75121 409 aa15.01□□□□□ -0.01
USP28-204ENST00000537642 PCDH8O95206 1070 aa15.01□□□□□ -0.01
USP28-204ENST00000537642 IGSF6O95976 241 aa15.01□□□□□ -0.01
USP28-204ENST00000537642 UGT2B4P06133 528 aa15.01□□□□□ -0.01
USP28-204ENST00000537642 RARAP10276 462 aa15.01□□□□□ -0.01
USP28-204ENST00000537642 PRLRP16471 622 aa15.01□□□□□ -0.01
USP28-204ENST00000537642 ABL2P42684 1182 aa15.01□□□□□ -0.01
USP28-204ENST00000537642 CCT8P50990 548 aa15.01□□□□□ -0.01
USP28-204ENST00000537642 NXPH1P58417 271 aa15.01□□□□□ -0.01
USP28-204ENST00000537642 RHOAP61586 193 aa15.01□□□□□ -0.01
USP28-204ENST00000537642 SHC2P98077 582 aa15.01□□□□□ -0.01
USP28-204ENST00000537642 IL9RQ01113 521 aa15.01□□□□□ -0.01
USP28-204ENST00000537642 SLC25A11Q02978 314 aaKnown RBP15.01□□□□□ -0.01
USP28-204ENST00000537642 HNRNPDQ14103 355 aaKnown RBP15.01□□□□□ -0.01
USP28-204ENST00000537642 TMEM259Q4ZIN3 620 aa15.01□□□□□ -0.01
USP28-204ENST00000537642 SLC45A4Q5BKX6 768 aa15.01□□□□□ -0.01
USP28-204ENST00000537642 PRAMEF14Q5SWL7 426 aa15.01□□□□□ -0.01
USP28-204ENST00000537642 SEL1L3Q68CR1 1132 aa15.01□□□□□ -0.01
USP28-204ENST00000537642 POLNQ7Z5Q5 900 aa15.01□□□□□ -0.01
USP28-204ENST00000537642 MFSD2AQ8NA29 543 aa15.01□□□□□ -0.01
USP28-204ENST00000537642 ZNF564Q8TBZ8 553 aaPredicted RBP15.01□□□□□ -0.01
USP28-204ENST00000537642 SETD7Q8WTS6 366 aaKnown RBP15.01□□□□□ -0.01
USP28-204ENST00000537642 TEKT4Q8WW24 435 aa15.01□□□□□ -0.01
USP28-204ENST00000537642 HSPH1Q92598 858 aa15.01□□□□□ -0.01
USP28-204ENST00000537642 KLHL32Q96NJ5 620 aa15.01□□□□□ -0.01
USP28-204ENST00000537642 PACSIN1Q9BY11 444 aa15.01□□□□□ -0.01
USP28-204ENST00000537642 ABHD10Q9NUJ1 306 aa15.01□□□□□ -0.01
USP28-204ENST00000537642 STAU2Q9NUL3 570 aaKnown RBP eCLIP15.01□□□□□ -0.01
USP28-204ENST00000537642 WASF3Q9UPY6 502 aa15.01□□□□□ -0.01
USP28-204ENST00000537642 BTBD3Q9Y2F9 522 aa15.01□□□□□ -0.01
USP28-204ENST00000537642 MFHAS1Q9Y4C4 1052 aa15.01□□□□□ -0.01
USP28-204ENST00000537642 SPEGQ15772 3267 aa15□□□□□ -0.01
USP28-204ENST00000537642 A0A1B0GTQ1 180 aa15□□□□□ -0.01
USP28-204ENST00000537642 H3BRJ5 948 aa15□□□□□ -0.01
USP28-204ENST00000537642 MYO1FO00160 1098 aa15□□□□□ -0.01
USP28-204ENST00000537642 FLRT2O43155 660 aa15□□□□□ -0.01
USP28-204ENST00000537642 SPINT1O43278 529 aa15□□□□□ -0.01
USP28-204ENST00000537642 AP1G1O43747 822 aa15□□□□□ -0.01
USP28-204ENST00000537642 PCDHGA12O60330 932 aa15□□□□□ -0.01
USP28-204ENST00000537642 DFNA5O60443 496 aa15□□□□□ -0.01
USP28-204ENST00000537642 AMPD1P23109 780 aa15□□□□□ -0.01
USP28-204ENST00000537642 ADKP55263 362 aaKnown RBP15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms