RNA–Protein interactions for RNA: ENST00000536107.5

YBX3-205, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-205	ENST00000536107	SIMC1	Q8NDZ2	872 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	IPO4	Q8TEX9	1081 aa	Known RBP	4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	RFFL	Q8WZ73	363 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	GCDH	Q92947	438 aa	Predicted RBP	4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	SKA1	Q96BD8	255 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	DRC1	Q96MC2	740 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	UROC1	Q96N76	676 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	SLC46A1	Q96NT5	459 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	SEPT5	Q99719	369 aa	Predicted RBP	4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	C1QTNF7	Q9BXJ2	289 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	UNK	Q9C0B0	810 aa	Known RBP	4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	LINC00597	Q9H2U6	94 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	GDA	Q9Y2T3	454 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	RAD54B	Q9Y620	910 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	PDCD11	Q14690	1871 aa	Known RBP	4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	NBAS	A2RRP1	2371 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	PI4KA	P42356	2102 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	NIPBL	Q6KC79	2804 aa	eCLIP	4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	BSN	Q9UPA5	3926 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107		A0A1B0GTQ1	180 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107		A0A1W2PQF6	199 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	ERICH2	A1L162	156 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	GOLGA8B	A8MQT2	603 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	FAM86B1	E9PN63	330 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	TMEM189-UBE2V1	I3L0A0	370 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	PODXL	O00592	558 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	WNT9A	O14904	365 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	FAM155B	O75949	473 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	SCAF4	O95104	1147 aa	Known RBP	4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	ZFPL1	O95159	310 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	FOS	P01100	380 aa	Predicted RBP	4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	FAM86B2	P0C5J1	330 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	THEGL	P0DJG4	465 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	ACADM	P11310	421 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	ARF4	P18085	180 aa	Predicted RBP	4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	ATP2B1	P20020	1258 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	NMT1	P30419	496 aa	Known RBP	4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	NT5C2	P49902	561 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	TFDP1	Q14186	410 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	ZNF268	Q14587	947 aa	Predicted RBP	4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	TGIF1	Q15583	401 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	NTRK3	Q16288	839 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	SLC10A6	Q3KNW5	377 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	C10orf76	Q5T2E6	689 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	PLA2G4F	Q68DD2	849 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	ARMCX5	Q6P1M9	558 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	NIPA1	Q7RTP0	329 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	TIPARP	Q7Z3E1	657 aa	Known RBP	4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	C14orf80	Q86SX3	495 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	USP37	Q86T82	979 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	MON1A	Q86VX9	555 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	ATAD1	Q8NBU5	361 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	C9orf43	Q8TAL5	461 aa	Predicted RBP	4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	TCP11	Q8WWU5	503 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	LINC00476	Q8WZB0	136 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	PRR11	Q96HE9	360 aa	Predicted RBP	4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	MRGPRX1	Q96LB2	322 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	ELF4	Q99607	663 aa	Predicted RBP	4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	NUP58	Q9BVL2	599 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	ACE2	Q9BYF1	805 aa	Predicted RBP	4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	ANO3	Q9BYT9	981 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	KRT23	Q9C075	422 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	TM9SF3	Q9HD45	589 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	WSB2	Q9NYS7	404 aa	Predicted RBP	4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	SEPT10	Q9P0V9	454 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	MAGED2	Q9UNF1	606 aa	Predicted RBP	4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	RBM8A	Q9Y5S9	174 aa	Known RBP	4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	NBEAL1	Q6ZS30	2694 aa		4.2	□□□□□ -1.74
YBX3-205	ENST00000536107	MYH7	P12883	1935 aa		4.19	□□□□□ -1.74
YBX3-205	ENST00000536107	ANKHD1	Q8IWZ3	2542 aa	Known RBP	4.19	□□□□□ -1.74
YBX3-205	ENST00000536107	AKAP9	Q99996	3911 aa		4.19	□□□□□ -1.74
YBX3-205	ENST00000536107	TRAV19	A0A0A6YYK7	116 aa		4.19	□□□□□ -1.74
YBX3-205	ENST00000536107	hCG_1642624	A0A1W2PR95	340 aa		4.19	□□□□□ -1.74
YBX3-205	ENST00000536107	TMEM200C	A6NKL6	621 aa		4.19	□□□□□ -1.74
YBX3-205	ENST00000536107	ASAP2	O43150	1006 aa		4.19	□□□□□ -1.74
YBX3-205	ENST00000536107	B4GALT5	O43286	388 aa		4.19	□□□□□ -1.74
YBX3-205	ENST00000536107	OPA1	O60313	960 aa		4.19	□□□□□ -1.74
YBX3-205	ENST00000536107	GAS7	O60861	476 aa		4.19	□□□□□ -1.74
YBX3-205	ENST00000536107	DDAH1	O94760	285 aa		4.19	□□□□□ -1.74
YBX3-205	ENST00000536107	FSBP	O95073	299 aa		4.19	□□□□□ -1.74
YBX3-205	ENST00000536107	CENPB	P07199	599 aa	Predicted RBP	4.19	□□□□□ -1.74
YBX3-205	ENST00000536107	GYPE	P15421	78 aa		4.19	□□□□□ -1.74
YBX3-205	ENST00000536107	ACP1	P24666	158 aa		4.19	□□□□□ -1.74
YBX3-205	ENST00000536107	APEX1	P27695	318 aa	Known RBP	4.19	□□□□□ -1.74
YBX3-205	ENST00000536107	SFN	P31947	248 aa		4.19	□□□□□ -1.74
YBX3-205	ENST00000536107	ARRB1	P49407	418 aa	Predicted RBP	4.19	□□□□□ -1.74
YBX3-205	ENST00000536107	TUFM	P49411	452 aa	Known RBP	4.19	□□□□□ -1.74
YBX3-205	ENST00000536107	JAK3	P52333	1124 aa		4.19	□□□□□ -1.74
YBX3-205	ENST00000536107	SEC24C	P53992	1094 aa		4.19	□□□□□ -1.74
YBX3-205	ENST00000536107	SET	Q01105	290 aa	Predicted RBP	4.19	□□□□□ -1.74
YBX3-205	ENST00000536107	YWHAH	Q04917	246 aa	Predicted RBP	4.19	□□□□□ -1.74
YBX3-205	ENST00000536107	KLRB1	Q12918	225 aa		4.19	□□□□□ -1.74
YBX3-205	ENST00000536107	SRSF6	Q13247	344 aa	Known RBP	4.19	□□□□□ -1.74
YBX3-205	ENST00000536107	STARD3	Q14849	445 aa		4.19	□□□□□ -1.74
YBX3-205	ENST00000536107	ZNF77	Q15935	545 aa		4.19	□□□□□ -1.74
YBX3-205	ENST00000536107	EIF2S3L	Q2VIR3	472 aa	Known RBP	4.19	□□□□□ -1.74
YBX3-205	ENST00000536107	KCNT1	Q5JUK3	1230 aa		4.19	□□□□□ -1.74
YBX3-205	ENST00000536107	JAKMIP3	Q5VZ66	844 aa		4.19	□□□□□ -1.74
YBX3-205	ENST00000536107	CENPP	Q6IPU0	288 aa		4.19	□□□□□ -1.74
YBX3-205	ENST00000536107	CD300LG	Q6UXG3	332 aa		4.19	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms