RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 ALG6Q9Y672 507 aa13.18□□□□□ -0.3
VPS28-216ENST00000533806 DUSP10Q9Y6W6 482 aa13.18□□□□□ -0.3
VPS28-216ENST00000533806 CACNA1AO00555 2505 aa13.18□□□□□ -0.3
VPS28-216ENST00000533806 A0A1B0GTW7 788 aa13.17□□□□□ -0.3
VPS28-216ENST00000533806 MEI4A8MW99 385 aa13.17□□□□□ -0.3
VPS28-216ENST00000533806 DFFAO00273 331 aa13.17□□□□□ -0.3
VPS28-216ENST00000533806 MUSKO15146 869 aa13.17□□□□□ -0.3
VPS28-216ENST00000533806 COMTP21964 271 aa13.17□□□□□ -0.3
VPS28-216ENST00000533806 RGRP47804 291 aa13.17□□□□□ -0.3
VPS28-216ENST00000533806 CSNK1DP48730 415 aa13.17□□□□□ -0.3
VPS28-216ENST00000533806 RHOAP61586 193 aa13.17□□□□□ -0.3
VPS28-216ENST00000533806 BNC1Q01954 994 aa13.17□□□□□ -0.3
VPS28-216ENST00000533806 NSUN2Q08J23 767 aaKnown RBP eCLIP13.17□□□□□ -0.3
VPS28-216ENST00000533806 RFTN1Q14699 578 aaPredicted RBP13.17□□□□□ -0.3
VPS28-216ENST00000533806 TAZQ16635 292 aa13.17□□□□□ -0.3
VPS28-216ENST00000533806 NEK5Q6P3R8 708 aa13.17□□□□□ -0.3
VPS28-216ENST00000533806 ZNF354CQ86Y25 554 aa13.17□□□□□ -0.3
VPS28-216ENST00000533806 LRRC49Q8IUZ0 686 aa13.17□□□□□ -0.3
VPS28-216ENST00000533806 MAP7D3Q8IWC1 876 aa13.17□□□□□ -0.3
VPS28-216ENST00000533806 C12orf50Q8NA57 414 aaPredicted RBP13.17□□□□□ -0.3
VPS28-216ENST00000533806 SPC24Q8NBT2 197 aa13.17□□□□□ -0.3
VPS28-216ENST00000533806 OR6K2Q8NGY2 324 aa13.17□□□□□ -0.3
VPS28-216ENST00000533806 NETO1Q8TDF5 533 aa13.17□□□□□ -0.3
VPS28-216ENST00000533806 NSMCE3Q96MG7 304 aa13.17□□□□□ -0.3
VPS28-216ENST00000533806 GDAP1L1Q96MZ0 367 aa13.17□□□□□ -0.3
VPS28-216ENST00000533806 ZNF599Q96NL3 588 aa13.17□□□□□ -0.3
VPS28-216ENST00000533806 RNF157Q96PX1 679 aa13.17□□□□□ -0.3
VPS28-216ENST00000533806 PSKH2Q96QS6 385 aa13.17□□□□□ -0.3
VPS28-216ENST00000533806 CALN1Q9BXU9 219 aa13.17□□□□□ -0.3
VPS28-216ENST00000533806 CPEB1Q9BZB8 566 aaKnown RBP13.17□□□□□ -0.3
VPS28-216ENST00000533806 PREBQ9HCU5 417 aa13.17□□□□□ -0.3
VPS28-216ENST00000533806 KLHL11Q9NVR0 708 aa13.17□□□□□ -0.3
VPS28-216ENST00000533806 SUSD2Q9UGT4 822 aa13.17□□□□□ -0.3
VPS28-216ENST00000533806 HYOU1Q9Y4L1 999 aa13.17□□□□□ -0.3
VPS28-216ENST00000533806 TBC1D3DA0A087WVF3 549 aa13.16□□□□□ -0.3
VPS28-216ENST00000533806 TBC1D3IA0A087WXS9 549 aa13.16□□□□□ -0.3
VPS28-216ENST00000533806 TBC1D3EA0A087X179 549 aa13.16□□□□□ -0.3
VPS28-216ENST00000533806 TBC1D3KA0A087X1G2 549 aa13.16□□□□□ -0.3
VPS28-216ENST00000533806 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.16□□□□□ -0.3
VPS28-216ENST00000533806 A0A1W2PPC4 97 aa13.16□□□□□ -0.3
VPS28-216ENST00000533806 TBC1D3FA6NER0 549 aaPredicted RBP13.16□□□□□ -0.3
VPS28-216ENST00000533806 TBC1D3LB9A6J9 549 aa13.16□□□□□ -0.3
VPS28-216ENST00000533806 KRIT1O00522 736 aa13.16□□□□□ -0.3
VPS28-216ENST00000533806 SLC30A4O14863 429 aa13.16□□□□□ -0.3
VPS28-216ENST00000533806 BCAT2O15382 392 aaPredicted RBP13.16□□□□□ -0.3
VPS28-216ENST00000533806 INSIG1O15503 277 aa13.16□□□□□ -0.3
VPS28-216ENST00000533806 SPINT1O43278 529 aa13.16□□□□□ -0.3
VPS28-216ENST00000533806 FSBPO95073 299 aa13.16□□□□□ -0.3
VPS28-216ENST00000533806 TBC1D3HP0C7X1 549 aa13.16□□□□□ -0.3
VPS28-216ENST00000533806 ENGP17813 658 aa13.16□□□□□ -0.3
VPS28-216ENST00000533806 GJC1P36383 396 aa13.16□□□□□ -0.3
VPS28-216ENST00000533806 PPP2CBP62714 309 aa13.16□□□□□ -0.3
VPS28-216ENST00000533806 PPP2CAP67775 309 aa13.16□□□□□ -0.3
VPS28-216ENST00000533806 SLC10A7Q0GE19 358 aa13.16□□□□□ -0.3
VPS28-216ENST00000533806 GALNT2Q10471 571 aa13.16□□□□□ -0.3
VPS28-216ENST00000533806 SLC10A2Q12908 348 aaPredicted RBP13.16□□□□□ -0.3
VPS28-216ENST00000533806 RSPO4Q2I0M5 234 aaPredicted RBP13.16□□□□□ -0.3
VPS28-216ENST00000533806 AASDHQ4L235 1098 aaPredicted RBP13.16□□□□□ -0.3
VPS28-216ENST00000533806 ZNF805Q5CZA5 627 aa13.16□□□□□ -0.3
VPS28-216ENST00000533806 SLC9A4Q6AI14 798 aa13.16□□□□□ -0.3
VPS28-216ENST00000533806 TBC1D3GQ6DHY5 549 aa13.16□□□□□ -0.3
VPS28-216ENST00000533806 TBC1D3CQ6IPX1 549 aa13.16□□□□□ -0.3
VPS28-216ENST00000533806 C11orf63Q6NUN7 778 aa13.16□□□□□ -0.3
VPS28-216ENST00000533806 PARS2Q7L3T8 475 aaKnown RBP13.16□□□□□ -0.3
VPS28-216ENST00000533806 TRIM69Q86WT6 500 aa13.16□□□□□ -0.3
VPS28-216ENST00000533806 RHOT1Q8IXI2 618 aa13.16□□□□□ -0.3
VPS28-216ENST00000533806 RGL4Q8IZJ4 473 aa13.16□□□□□ -0.3
VPS28-216ENST00000533806 TBC1D3Q8IZP1 549 aaPredicted RBP13.16□□□□□ -0.3
VPS28-216ENST00000533806 TSEN2Q8NCE0 465 aaKnown RBP13.16□□□□□ -0.3
VPS28-216ENST00000533806 ACRBPQ8NEB7 543 aa13.16□□□□□ -0.3
VPS28-216ENST00000533806 TPCN2Q8NHX9 752 aa13.16□□□□□ -0.3
VPS28-216ENST00000533806 FATE1Q969F0 183 aa13.16□□□□□ -0.3
VPS28-216ENST00000533806 OSBPL1AQ9BXW6 950 aa13.16□□□□□ -0.3
VPS28-216ENST00000533806 GOLPH3Q9H4A6 298 aa13.16□□□□□ -0.3
VPS28-216ENST00000533806 ZDHHC6Q9H6R6 413 aa13.16□□□□□ -0.3
VPS28-216ENST00000533806 TM9SF3Q9HD45 589 aa13.16□□□□□ -0.3
VPS28-216ENST00000533806 LUC7LQ9NQ29 371 aaKnown RBP13.16□□□□□ -0.3
VPS28-216ENST00000533806 FSCN3Q9NQT6 498 aa13.16□□□□□ -0.3
VPS28-216ENST00000533806 FADS3Q9Y5Q0 445 aa13.16□□□□□ -0.3
VPS28-216ENST00000533806 NUP205Q92621 2012 aa13.16□□□□□ -0.3
VPS28-216ENST00000533806 NYNRINQ9P2P1 1898 aaKnown RBP13.16□□□□□ -0.3
VPS28-216ENST00000533806 TSPAN11A1L157 253 aa13.15□□□□□ -0.3
VPS28-216ENST00000533806 FAM47DPA6NHR8 397 aa13.15□□□□□ -0.3
VPS28-216ENST00000533806 C16orf96A6NNT2 1141 aa13.15□□□□□ -0.3
VPS28-216ENST00000533806 ARHGAP33O14559 1287 aa13.15□□□□□ -0.3
VPS28-216ENST00000533806 WNT9AO14904 365 aa13.15□□□□□ -0.3
VPS28-216ENST00000533806 AREL1O15033 823 aa13.15□□□□□ -0.3
VPS28-216ENST00000533806 AP1G1O43747 822 aa13.15□□□□□ -0.3
VPS28-216ENST00000533806 MFSD11O43934 449 aa13.15□□□□□ -0.3
VPS28-216ENST00000533806 PALMO75781 387 aa13.15□□□□□ -0.3
VPS28-216ENST00000533806 IGSF6O95976 241 aa13.15□□□□□ -0.3
VPS28-216ENST00000533806 CFIP05156 583 aa13.15□□□□□ -0.3
VPS28-216ENST00000533806 ADRB3P13945 408 aa13.15□□□□□ -0.3
VPS28-216ENST00000533806 GNSP15586 552 aa13.15□□□□□ -0.3
VPS28-216ENST00000533806 CR2P20023 1033 aa13.15□□□□□ -0.3
VPS28-216ENST00000533806 SDHBP21912 280 aa13.15□□□□□ -0.3
VPS28-216ENST00000533806 SERPINB6P35237 376 aa13.15□□□□□ -0.3
VPS28-216ENST00000533806 GARSP41250 739 aaKnown RBP13.15□□□□□ -0.3
VPS28-216ENST00000533806 NOP2P46087 812 aaKnown RBP13.15□□□□□ -0.3
VPS28-216ENST00000533806 NEK3P51956 506 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms