RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 CFAP54Q96N23 3096 aa15.28■□□□□ 0.04
CPSF1-208ENST00000532560 GON4LQ3T8J9 2241 aa15.27■□□□□ 0.04
CPSF1-208ENST00000532560 LNP1A1A4G5 178 aa15.27■□□□□ 0.04
CPSF1-208ENST00000532560 RCCD1A6NED2 376 aa15.27■□□□□ 0.04
CPSF1-208ENST00000532560 BTNL10A8MVZ5 291 aa15.27■□□□□ 0.04
CPSF1-208ENST00000532560 RNF103O00237 685 aa15.27■□□□□ 0.04
CPSF1-208ENST00000532560 PSTPIP1O43586 416 aa15.27■□□□□ 0.04
CPSF1-208ENST00000532560 SPOPO43791 374 aa15.27■□□□□ 0.04
CPSF1-208ENST00000532560 IGHV4-34P06331 123 aa15.27■□□□□ 0.04
CPSF1-208ENST00000532560 SERPINF2P08697 491 aa15.27■□□□□ 0.04
CPSF1-208ENST00000532560 GNSP15586 552 aa15.27■□□□□ 0.04
CPSF1-208ENST00000532560 CCR5P51681 352 aa15.27■□□□□ 0.04
CPSF1-208ENST00000532560 VAV2P52735 878 aa15.27■□□□□ 0.04
CPSF1-208ENST00000532560 RFTN1Q14699 578 aaPredicted RBP15.27■□□□□ 0.04
CPSF1-208ENST00000532560 PAFAH1B3Q15102 231 aaKnown RBP15.27■□□□□ 0.04
CPSF1-208ENST00000532560 CYTH1Q15438 398 aa15.27■□□□□ 0.04
CPSF1-208ENST00000532560 ZFYVE27Q5T4F4 411 aa15.27■□□□□ 0.04
CPSF1-208ENST00000532560 ATXN7L2Q5T6C5 722 aaPredicted RBP15.27■□□□□ 0.04
CPSF1-208ENST00000532560 NCBP2-AS2Q69YL0 99 aa15.27■□□□□ 0.04
CPSF1-208ENST00000532560 ARHGAP36Q6ZRI8 547 aa15.27■□□□□ 0.04
CPSF1-208ENST00000532560 LRRC49Q8IUZ0 686 aa15.27■□□□□ 0.04
CPSF1-208ENST00000532560 RHOT1Q8IXI2 618 aa15.27■□□□□ 0.04
CPSF1-208ENST00000532560 RYBPQ8N488 228 aaPredicted RBP15.27■□□□□ 0.04
CPSF1-208ENST00000532560 ATPAF2Q8N5M1 289 aa15.27■□□□□ 0.04
CPSF1-208ENST00000532560 NETO2Q8NC67 525 aa15.27■□□□□ 0.04
CPSF1-208ENST00000532560 ACRBPQ8NEB7 543 aa15.27■□□□□ 0.04
CPSF1-208ENST00000532560 OR6K2Q8NGY2 324 aa15.27■□□□□ 0.04
CPSF1-208ENST00000532560 PCDH19Q8TAB3 1148 aa15.27■□□□□ 0.04
CPSF1-208ENST00000532560 C1orf216Q8TAB5 229 aa15.27■□□□□ 0.04
CPSF1-208ENST00000532560 NETO1Q8TDF5 533 aa15.27■□□□□ 0.04
CPSF1-208ENST00000532560 SNX19Q92543 992 aa15.27■□□□□ 0.04
CPSF1-208ENST00000532560 RAPGEF5Q92565 580 aa15.27■□□□□ 0.04
CPSF1-208ENST00000532560 BIRC7Q96CA5 298 aa15.27■□□□□ 0.04
CPSF1-208ENST00000532560 NUSAP1Q9BXS6 441 aaKnown RBP15.27■□□□□ 0.04
CPSF1-208ENST00000532560 CAPN10Q9HC96 672 aa15.27■□□□□ 0.04
CPSF1-208ENST00000532560 PREBQ9HCU5 417 aa15.27■□□□□ 0.04
CPSF1-208ENST00000532560 PCDH15Q96QU1 1955 aa15.26■□□□□ 0.03
CPSF1-208ENST00000532560 A0A1B0GTW7 788 aa15.26■□□□□ 0.03
CPSF1-208ENST00000532560 LRRD1A4D1F6 860 aa15.26■□□□□ 0.03
CPSF1-208ENST00000532560 FAM47DPA6NHR8 397 aa15.26■□□□□ 0.03
CPSF1-208ENST00000532560 C3orf70A6NLC5 250 aaPredicted RBP15.26■□□□□ 0.03
CPSF1-208ENST00000532560 KRIT1O00522 736 aa15.26■□□□□ 0.03
CPSF1-208ENST00000532560 PJA2O43164 708 aa15.26■□□□□ 0.03
CPSF1-208ENST00000532560 MFSD11O43934 449 aa15.26■□□□□ 0.03
CPSF1-208ENST00000532560 PALMO75781 387 aa15.26■□□□□ 0.03
CPSF1-208ENST00000532560 FSBPO95073 299 aa15.26■□□□□ 0.03
CPSF1-208ENST00000532560 KDELR1P24390 212 aa15.26■□□□□ 0.03
CPSF1-208ENST00000532560 CD27P26842 260 aa15.26■□□□□ 0.03
CPSF1-208ENST00000532560 MAOBP27338 520 aa15.26■□□□□ 0.03
CPSF1-208ENST00000532560 NEK3P51956 506 aa15.26■□□□□ 0.03
CPSF1-208ENST00000532560 RAD51Q06609 339 aa15.26■□□□□ 0.03
CPSF1-208ENST00000532560 MYLK3Q32MK0 819 aa15.26■□□□□ 0.03
CPSF1-208ENST00000532560 TMCO4Q5TGY1 634 aa15.26■□□□□ 0.03
CPSF1-208ENST00000532560 ERN2Q76MJ5 926 aaKnown RBP15.26■□□□□ 0.03
CPSF1-208ENST00000532560 TRIM69Q86WT6 500 aa15.26■□□□□ 0.03
CPSF1-208ENST00000532560 ZCCHC9Q8N567 271 aaKnown RBP15.26■□□□□ 0.03
CPSF1-208ENST00000532560 PQLC3Q8N755 202 aa15.26■□□□□ 0.03
CPSF1-208ENST00000532560 TPCN2Q8NHX9 752 aa15.26■□□□□ 0.03
CPSF1-208ENST00000532560 ORAI3Q9BRQ5 295 aa15.26■□□□□ 0.03
CPSF1-208ENST00000532560 EDEM2Q9BV94 578 aa15.26■□□□□ 0.03
CPSF1-208ENST00000532560 DDX56Q9NY93 547 aaKnown RBP15.26■□□□□ 0.03
CPSF1-208ENST00000532560 EIF2B4Q9UI10 523 aaKnown RBP15.26■□□□□ 0.03
CPSF1-208ENST00000532560 SALL4Q9UJQ4 1053 aa15.26■□□□□ 0.03
CPSF1-208ENST00000532560 ALG6Q9Y672 507 aa15.26■□□□□ 0.03
CPSF1-208ENST00000532560 PI4KAP42356 2102 aa15.25■□□□□ 0.03
CPSF1-208ENST00000532560 BCAT2O15382 392 aaPredicted RBP15.25■□□□□ 0.03
CPSF1-208ENST00000532560 LATO43561 262 aa15.25■□□□□ 0.03
CPSF1-208ENST00000532560 MAFKO60675 156 aa15.25■□□□□ 0.03
CPSF1-208ENST00000532560 KRT1P04264 644 aa15.25■□□□□ 0.03
CPSF1-208ENST00000532560 CFIP05156 583 aa15.25■□□□□ 0.03
CPSF1-208ENST00000532560 SDHBP21912 280 aa15.25■□□□□ 0.03
CPSF1-208ENST00000532560 GKP32189 559 aa15.25■□□□□ 0.03
CPSF1-208ENST00000532560 LIMK1P53667 647 aa15.25■□□□□ 0.03
CPSF1-208ENST00000532560 TAS2R38P59533 333 aa15.25■□□□□ 0.03
CPSF1-208ENST00000532560 PPP2CBP62714 309 aa15.25■□□□□ 0.03
CPSF1-208ENST00000532560 PPP2CAP67775 309 aa15.25■□□□□ 0.03
CPSF1-208ENST00000532560 IRX4P78413 519 aa15.25■□□□□ 0.03
CPSF1-208ENST00000532560 GALNT2Q10471 571 aa15.25■□□□□ 0.03
CPSF1-208ENST00000532560 GRM3Q14832 879 aa15.25■□□□□ 0.03
CPSF1-208ENST00000532560 ZNF805Q5CZA5 627 aa15.25■□□□□ 0.03
CPSF1-208ENST00000532560 PARS2Q7L3T8 475 aaKnown RBP15.25■□□□□ 0.03
CPSF1-208ENST00000532560 TXLNBQ8N3L3 684 aa15.25■□□□□ 0.03
CPSF1-208ENST00000532560 EXOC2Q96KP1 924 aa15.25■□□□□ 0.03
CPSF1-208ENST00000532560 CINPQ9BW66 212 aaPredicted RBP15.25■□□□□ 0.03
CPSF1-208ENST00000532560 CPEB1Q9BZB8 566 aaKnown RBP15.25■□□□□ 0.03
CPSF1-208ENST00000532560 LACRTQ9GZZ8 138 aa15.25■□□□□ 0.03
CPSF1-208ENST00000532560 MIR1-1HGQ9H1L0 117 aa15.25■□□□□ 0.03
CPSF1-208ENST00000532560 GOLPH3Q9H4A6 298 aa15.25■□□□□ 0.03
CPSF1-208ENST00000532560 RXFP3Q9NSD7 469 aa15.25■□□□□ 0.03
CPSF1-208ENST00000532560 SEPT3Q9UH03 358 aa15.25■□□□□ 0.03
CPSF1-208ENST00000532560 CDV3Q9UKY7 258 aaKnown RBP15.25■□□□□ 0.03
CPSF1-208ENST00000532560 SLC6A14Q9UN76 642 aa15.25■□□□□ 0.03
CPSF1-208ENST00000532560 HYOU1Q9Y4L1 999 aa15.25■□□□□ 0.03
CPSF1-208ENST00000532560 TBC1D3DA0A087WVF3 549 aa15.24■□□□□ 0.03
CPSF1-208ENST00000532560 TBC1D3IA0A087WXS9 549 aa15.24■□□□□ 0.03
CPSF1-208ENST00000532560 TBC1D3EA0A087X179 549 aa15.24■□□□□ 0.03
CPSF1-208ENST00000532560 TBC1D3KA0A087X1G2 549 aa15.24■□□□□ 0.03
CPSF1-208ENST00000532560 LOC105378220A0A1B0GUY1 285 aaPredicted RBP15.24■□□□□ 0.03
CPSF1-208ENST00000532560 A0A1W2PPC4 97 aa15.24■□□□□ 0.03
CPSF1-208ENST00000532560 TBC1D3FA6NER0 549 aaPredicted RBP15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms