RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 UFL1O94874 794 aa4.32□□□□□ -1.72
CD44-235ENST00000532339 PLAUP00749 431 aa4.32□□□□□ -1.72
CD44-235ENST00000532339 CRYABP02511 175 aaKnown RBP4.32□□□□□ -1.72
CD44-235ENST00000532339 CCND3P30281 292 aaPredicted RBP4.32□□□□□ -1.72
CD44-235ENST00000532339 TLE2Q04725 743 aa4.32□□□□□ -1.72
CD44-235ENST00000532339 MTAPQ13126 283 aa4.32□□□□□ -1.72
CD44-235ENST00000532339 TNFAIP1Q13829 316 aa4.32□□□□□ -1.72
CD44-235ENST00000532339 BLMHQ13867 455 aa4.32□□□□□ -1.72
CD44-235ENST00000532339 ACOX1Q15067 660 aa4.32□□□□□ -1.72
CD44-235ENST00000532339 KLHL22Q53GT1 634 aa4.32□□□□□ -1.72
CD44-235ENST00000532339 EARS2Q5JPH6 523 aaKnown RBP4.32□□□□□ -1.72
CD44-235ENST00000532339 RUSC1-AS1Q66K80 236 aa4.32□□□□□ -1.72
CD44-235ENST00000532339 PSRC1Q6PGN9 363 aaPredicted RBP4.32□□□□□ -1.72
CD44-235ENST00000532339 ZNF793Q6ZN11 406 aa4.32□□□□□ -1.72
CD44-235ENST00000532339 COLCA1Q6ZS62 124 aa4.32□□□□□ -1.72
CD44-235ENST00000532339 CACNA2D3Q8IZS8 1091 aa4.32□□□□□ -1.72
CD44-235ENST00000532339 TXLNBQ8N3L3 684 aa4.32□□□□□ -1.72
CD44-235ENST00000532339 MYCT1Q8N699 235 aa4.32□□□□□ -1.72
CD44-235ENST00000532339 ZNF527Q8NB42 609 aa4.32□□□□□ -1.72
CD44-235ENST00000532339 SPATA5Q8NB90 893 aa4.32□□□□□ -1.72
CD44-235ENST00000532339 ZNF566Q969W8 418 aa4.32□□□□□ -1.72
CD44-235ENST00000532339 MARK4Q96L34 752 aa4.32□□□□□ -1.72
CD44-235ENST00000532339 SCLT1Q96NL6 688 aa4.32□□□□□ -1.72
CD44-235ENST00000532339 FCRL5Q96RD9 977 aa4.32□□□□□ -1.72
CD44-235ENST00000532339 ISCA1Q9BUE6 129 aa4.32□□□□□ -1.72
CD44-235ENST00000532339 UTP14AQ9BVJ6 771 aaKnown RBP4.32□□□□□ -1.72
CD44-235ENST00000532339 MXD3Q9BW11 206 aa4.32□□□□□ -1.72
CD44-235ENST00000532339 MTIF3Q9H2K0 278 aaKnown RBP4.32□□□□□ -1.72
CD44-235ENST00000532339 VEZTQ9HBM0 779 aa4.32□□□□□ -1.72
CD44-235ENST00000532339 POLKQ9UBT6 870 aa4.32□□□□□ -1.72
CD44-235ENST00000532339 MAGED2Q9UNF1 606 aaPredicted RBP4.32□□□□□ -1.72
CD44-235ENST00000532339 MYO18BQ8IUG5 2567 aa4.32□□□□□ -1.72
CD44-235ENST00000532339 CNOT1A5YKK6 2376 aaKnown RBP4.32□□□□□ -1.72
CD44-235ENST00000532339 A0A087WZ62 844 aa4.31□□□□□ -1.72
CD44-235ENST00000532339 hCG_1642624A0A1W2PR95 340 aa4.31□□□□□ -1.72
CD44-235ENST00000532339 CLRN2A0PK11 232 aa4.31□□□□□ -1.72
CD44-235ENST00000532339 GOLGA6L3A6NEY3 463 aa4.31□□□□□ -1.72
CD44-235ENST00000532339 C2CD4BA6NLJ0 364 aa4.31□□□□□ -1.72
CD44-235ENST00000532339 B4DGG1 531 aa4.31□□□□□ -1.72
CD44-235ENST00000532339 RRHO14718 337 aa4.31□□□□□ -1.72
CD44-235ENST00000532339 THAP12O43422 761 aa4.31□□□□□ -1.72
CD44-235ENST00000532339 TOMM40O96008 361 aa4.31□□□□□ -1.72
CD44-235ENST00000532339 MBPP02686 304 aaPredicted RBP4.31□□□□□ -1.72
CD44-235ENST00000532339 CSTBP04080 98 aaKnown RBP4.31□□□□□ -1.72
CD44-235ENST00000532339 SLC12A2P55011 1212 aa4.31□□□□□ -1.72
CD44-235ENST00000532339 RAE1P78406 368 aaKnown RBP4.31□□□□□ -1.72
CD44-235ENST00000532339 B4GALNT1Q00973 533 aa4.31□□□□□ -1.72
CD44-235ENST00000532339 PPIGQ13427 754 aaKnown RBP eCLIP4.31□□□□□ -1.72
CD44-235ENST00000532339 CNGA3Q16281 694 aa4.31□□□□□ -1.72
CD44-235ENST00000532339 AASDHQ4L235 1098 aaPredicted RBP4.31□□□□□ -1.72
CD44-235ENST00000532339 CCDC38Q502W7 563 aa4.31□□□□□ -1.72
CD44-235ENST00000532339 MIDNQ504T8 468 aa4.31□□□□□ -1.72
CD44-235ENST00000532339 PGBD2Q6P3X8 592 aa4.31□□□□□ -1.72
CD44-235ENST00000532339 KIF6Q6ZMV9 814 aa4.31□□□□□ -1.72
CD44-235ENST00000532339 C9orf47Q6ZRZ4 202 aa4.31□□□□□ -1.72
CD44-235ENST00000532339 FAM57BQ71RH2 274 aa4.31□□□□□ -1.72
CD44-235ENST00000532339 BEND5Q7L4P6 421 aa4.31□□□□□ -1.72
CD44-235ENST00000532339 SMAP1Q8IYB5 467 aaPredicted RBP4.31□□□□□ -1.72
CD44-235ENST00000532339 MMP21Q8N119 569 aa4.31□□□□□ -1.72
CD44-235ENST00000532339 SUN3Q8TAQ9 357 aa4.31□□□□□ -1.72
CD44-235ENST00000532339 IGFBPL1Q8WX77 278 aa4.31□□□□□ -1.72
CD44-235ENST00000532339 CCT6BQ92526 530 aa4.31□□□□□ -1.72
CD44-235ENST00000532339 PIGKQ92643 395 aa4.31□□□□□ -1.72
CD44-235ENST00000532339 CELF1Q92879 486 aaKnown RBP4.31□□□□□ -1.72
CD44-235ENST00000532339 TRMT61AQ96FX7 289 aaKnown RBP4.31□□□□□ -1.72
CD44-235ENST00000532339 TM2D2Q9BX73 214 aa4.31□□□□□ -1.72
CD44-235ENST00000532339 RNF26Q9BY78 433 aaPredicted RBP4.31□□□□□ -1.72
CD44-235ENST00000532339 FAM234AQ9H0X4 552 aa4.31□□□□□ -1.72
CD44-235ENST00000532339 SAP30LQ9HAJ7 183 aa4.31□□□□□ -1.72
CD44-235ENST00000532339 TMEM45AQ9NWC5 275 aa4.31□□□□□ -1.72
CD44-235ENST00000532339 MAN2B2Q9Y2E5 1009 aa4.31□□□□□ -1.72
CD44-235ENST00000532339 GPR52Q9Y2T5 361 aa4.31□□□□□ -1.72
CD44-235ENST00000532339 SLC45A1Q9Y2W3 748 aa4.31□□□□□ -1.72
CD44-235ENST00000532339 CEP83Q9Y592 693 aa4.31□□□□□ -1.72
CD44-235ENST00000532339 ANKRD36CQ5JPF3 1778 aa4.31□□□□□ -1.72
CD44-235ENST00000532339 COL4A1P02462 1669 aa4.31□□□□□ -1.72
CD44-235ENST00000532339 FRYQ5TBA9 3013 aa4.3□□□□□ -1.72
CD44-235ENST00000532339 FAM90A8PA6NJQ4 464 aa4.3□□□□□ -1.72
CD44-235ENST00000532339 TAF4O00268 1085 aa4.3□□□□□ -1.72
CD44-235ENST00000532339 AREL1O15033 823 aa4.3□□□□□ -1.72
CD44-235ENST00000532339 SKAP2O75563 359 aaPredicted RBP4.3□□□□□ -1.72
CD44-235ENST00000532339 TIMP1P01033 207 aa4.3□□□□□ -1.72
CD44-235ENST00000532339 ALPLP05186 524 aa4.3□□□□□ -1.72
CD44-235ENST00000532339 PROS1P07225 676 aa4.3□□□□□ -1.72
CD44-235ENST00000532339 FAM90A13PP0C7W8 464 aa4.3□□□□□ -1.72
CD44-235ENST00000532339 FAM90A24PP0C7X0 464 aa4.3□□□□□ -1.72
CD44-235ENST00000532339 MYL4P12829 197 aa4.3□□□□□ -1.72
CD44-235ENST00000532339 CYP2B6P20813 491 aa4.3□□□□□ -1.72
CD44-235ENST00000532339 RPS6KB1P23443 525 aa4.3□□□□□ -1.72
CD44-235ENST00000532339 PPM1FP49593 454 aaPredicted RBP4.3□□□□□ -1.72
CD44-235ENST00000532339 POU5F1BQ06416 359 aa4.3□□□□□ -1.72
CD44-235ENST00000532339 TEFQ10587 303 aa4.3□□□□□ -1.72
CD44-235ENST00000532339 KCNJ12Q14500 433 aa4.3□□□□□ -1.72
CD44-235ENST00000532339 ZACNQ401N2 412 aa4.3□□□□□ -1.72
CD44-235ENST00000532339 DAB2IPQ5VWQ8 1189 aa4.3□□□□□ -1.72
CD44-235ENST00000532339 SULT6B1Q6IMI4 303 aa4.3□□□□□ -1.72
CD44-235ENST00000532339 LVRNQ6Q4G3 990 aa4.3□□□□□ -1.72
CD44-235ENST00000532339 SLC44A5Q8NCS7 719 aa4.3□□□□□ -1.72
CD44-235ENST00000532339 NEK9Q8TD19 979 aa4.3□□□□□ -1.72
CD44-235ENST00000532339 WIPF2Q8TF74 440 aaPredicted RBP4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms