RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 TARDBPQ13148 414 aaKnown RBP eCLIP17.11■□□□□ 0.33
CPSF1-207ENST00000531727 FGL2Q14314 439 aa17.11■□□□□ 0.33
CPSF1-207ENST00000531727 POLD3Q15054 466 aaPredicted RBP17.11■□□□□ 0.33
CPSF1-207ENST00000531727 HS1BP3Q53T59 392 aa17.11■□□□□ 0.33
CPSF1-207ENST00000531727 WDR59Q6PJI9 974 aa17.11■□□□□ 0.33
CPSF1-207ENST00000531727 KYAT3Q6YP21 454 aaKnown RBP17.11■□□□□ 0.33
CPSF1-207ENST00000531727 Q6ZSR6 202 aa17.11■□□□□ 0.33
CPSF1-207ENST00000531727 MON1BQ7L1V2 547 aa17.11■□□□□ 0.33
CPSF1-207ENST00000531727 PTAR1Q7Z6K3 402 aaPredicted RBP17.11■□□□□ 0.33
CPSF1-207ENST00000531727 SLFN11Q7Z7L1 901 aa17.11■□□□□ 0.33
CPSF1-207ENST00000531727 PDZD3Q86UT5 571 aa17.11■□□□□ 0.33
CPSF1-207ENST00000531727 RYBPQ8N488 228 aaPredicted RBP17.11■□□□□ 0.33
CPSF1-207ENST00000531727 OR2AP1Q8NGE2 309 aa17.11■□□□□ 0.33
CPSF1-207ENST00000531727 OR6K2Q8NGY2 324 aa17.11■□□□□ 0.33
CPSF1-207ENST00000531727 RFFLQ8WZ73 363 aa17.11■□□□□ 0.33
CPSF1-207ENST00000531727 RAB7BQ96AH8 199 aa17.11■□□□□ 0.33
CPSF1-207ENST00000531727 BMFQ96LC9 184 aa17.11■□□□□ 0.33
CPSF1-207ENST00000531727 GBP4Q96PP9 640 aa17.11■□□□□ 0.33
CPSF1-207ENST00000531727 ERGIC2Q96RQ1 377 aa17.11■□□□□ 0.33
CPSF1-207ENST00000531727 GPR27Q9NS67 375 aa17.11■□□□□ 0.33
CPSF1-207ENST00000531727 MYLKQ15746 1914 aa17.11■□□□□ 0.33
CPSF1-207ENST00000531727 TRPM6Q9BX84 2022 aa17.1■□□□□ 0.33
CPSF1-207ENST00000531727 A0A087WV48 116 aa17.1■□□□□ 0.33
CPSF1-207ENST00000531727 ZSCAN5CA6NGD5 496 aaPredicted RBP17.1■□□□□ 0.33
CPSF1-207ENST00000531727 SIGLEC16A6NMB1 481 aa17.1■□□□□ 0.33
CPSF1-207ENST00000531727 C16orf96A6NNT2 1141 aa17.1■□□□□ 0.33
CPSF1-207ENST00000531727 TSPAN6O43657 245 aa17.1■□□□□ 0.33
CPSF1-207ENST00000531727 PAK4O96013 591 aaPredicted RBP17.1■□□□□ 0.33
CPSF1-207ENST00000531727 GIMD1P0DJR0 217 aa17.1■□□□□ 0.33
CPSF1-207ENST00000531727 GKP32189 559 aa17.1■□□□□ 0.33
CPSF1-207ENST00000531727 ABL2P42684 1182 aa17.1■□□□□ 0.33
CPSF1-207ENST00000531727 SNRPD1P62314 119 aaKnown RBP17.1■□□□□ 0.33
CPSF1-207ENST00000531727 C1QBPQ07021 282 aaKnown RBP17.1■□□□□ 0.33
CPSF1-207ENST00000531727 STX1AQ16623 288 aa17.1■□□□□ 0.33
CPSF1-207ENST00000531727 ZNF805Q5CZA5 627 aa17.1■□□□□ 0.33
CPSF1-207ENST00000531727 LEKR1Q6ZMV7 388 aa17.1■□□□□ 0.33
CPSF1-207ENST00000531727 CACTIN-AS1Q8N1I8 211 aa17.1■□□□□ 0.33
CPSF1-207ENST00000531727 LENG8Q96PV6 779 aaPredicted RBP17.1■□□□□ 0.33
CPSF1-207ENST00000531727 OSBPL1AQ9BXW6 950 aa17.1■□□□□ 0.33
CPSF1-207ENST00000531727 SEPT11Q9NVA2 429 aaKnown RBP17.1■□□□□ 0.33
CPSF1-207ENST00000531727 ARID1BQ8NFD5 2236 aaPredicted RBP17.09■□□□□ 0.33
CPSF1-207ENST00000531727 TCRBV5S1A1TA0A578 114 aa17.09■□□□□ 0.33
CPSF1-207ENST00000531727 POM121BA6NF01 834 aa17.09■□□□□ 0.33
CPSF1-207ENST00000531727 LRRC10BA6NIK2 292 aa17.09■□□□□ 0.33
CPSF1-207ENST00000531727 KRIT1O00522 736 aa17.09■□□□□ 0.33
CPSF1-207ENST00000531727 RAD51BO15315 384 aa17.09■□□□□ 0.33
CPSF1-207ENST00000531727 FFAR2O15552 330 aa17.09■□□□□ 0.33
CPSF1-207ENST00000531727 CCP110O43303 1012 aa17.09■□□□□ 0.33
CPSF1-207ENST00000531727 KDELR3O43731 214 aa17.09■□□□□ 0.33
CPSF1-207ENST00000531727 POP4O95707 220 aaKnown RBP17.09■□□□□ 0.33
CPSF1-207ENST00000531727 ALPPL2P10696 532 aa17.09■□□□□ 0.33
CPSF1-207ENST00000531727 CDK11BP21127 795 aaKnown RBP17.09■□□□□ 0.33
CPSF1-207ENST00000531727 RABIFP47224 123 aa17.09■□□□□ 0.33
CPSF1-207ENST00000531727 ZNF143P52747 638 aaPredicted RBP17.09■□□□□ 0.33
CPSF1-207ENST00000531727 DAB2P98082 770 aa17.09■□□□□ 0.33
CPSF1-207ENST00000531727 INSM1Q01101 510 aaPredicted RBP17.09■□□□□ 0.33
CPSF1-207ENST00000531727 SGCGQ13326 291 aa17.09■□□□□ 0.33
CPSF1-207ENST00000531727 RTP5Q14D33 572 aa17.09■□□□□ 0.33
CPSF1-207ENST00000531727 MYLK3Q32MK0 819 aa17.09■□□□□ 0.33
CPSF1-207ENST00000531727 EFHC2Q5JST6 749 aa17.09■□□□□ 0.33
CPSF1-207ENST00000531727 DNAJC24Q6P3W2 148 aa17.09■□□□□ 0.33
CPSF1-207ENST00000531727 PYROXD2Q8N2H3 581 aa17.09■□□□□ 0.33
CPSF1-207ENST00000531727 RTL3Q8N8U3 475 aaKnown RBP17.09■□□□□ 0.33
CPSF1-207ENST00000531727 VOPP1Q96AW1 172 aa17.09■□□□□ 0.33
CPSF1-207ENST00000531727 KLF6Q99612 283 aaPredicted RBP17.09■□□□□ 0.33
CPSF1-207ENST00000531727 AGPAT1Q99943 283 aa17.09■□□□□ 0.33
CPSF1-207ENST00000531727 C1QTNF2Q9BXJ5 285 aa17.09■□□□□ 0.33
CPSF1-207ENST00000531727 NRSN2Q9GZP1 204 aa17.09■□□□□ 0.33
CPSF1-207ENST00000531727 CAAP1Q9H8G2 361 aa17.09■□□□□ 0.33
CPSF1-207ENST00000531727 DNAJC28Q9NX36 388 aa17.09■□□□□ 0.33
CPSF1-207ENST00000531727 NLGN3Q9NZ94 848 aa17.09■□□□□ 0.33
CPSF1-207ENST00000531727 GOLGA4Q13439 2230 aaKnown RBP17.08■□□□□ 0.33
CPSF1-207ENST00000531727 SPTY2D1-AS1A0A0U1RR47 76 aa17.08■□□□□ 0.32
CPSF1-207ENST00000531727 ANKRD62A6NC57 917 aa17.08■□□□□ 0.32
CPSF1-207ENST00000531727 IGLON5A6NGN9 336 aa17.08■□□□□ 0.32
CPSF1-207ENST00000531727 NEMP1O14524 444 aa17.08■□□□□ 0.32
CPSF1-207ENST00000531727 BUB1O43683 1085 aa17.08■□□□□ 0.32
CPSF1-207ENST00000531727 UGT2B4P06133 528 aa17.08■□□□□ 0.32
CPSF1-207ENST00000531727 EPHB2P29323 1055 aa17.08■□□□□ 0.32
CPSF1-207ENST00000531727 HNRNPKP61978 463 aaKnown RBP eCLIP17.08■□□□□ 0.32
CPSF1-207ENST00000531727 E2F1Q01094 437 aa17.08■□□□□ 0.32
CPSF1-207ENST00000531727 FZD2Q14332 565 aa17.08■□□□□ 0.32
CPSF1-207ENST00000531727 NCAPHQ15003 741 aa17.08■□□□□ 0.32
CPSF1-207ENST00000531727 ZNF542PQ5EBM4 170 aa17.08■□□□□ 0.32
CPSF1-207ENST00000531727 ATXN7L2Q5T6C5 722 aaPredicted RBP17.08■□□□□ 0.32
CPSF1-207ENST00000531727 SCYL2Q6P3W7 929 aa17.08■□□□□ 0.32
CPSF1-207ENST00000531727 APTXQ7Z2E3 356 aaKnown RBP17.08■□□□□ 0.32
CPSF1-207ENST00000531727 CASKIN2Q8WXE0 1202 aa17.08■□□□□ 0.32
CPSF1-207ENST00000531727 ASB12Q8WXK4 309 aa17.08■□□□□ 0.32
CPSF1-207ENST00000531727 MCEEQ96PE7 176 aa17.08■□□□□ 0.32
CPSF1-207ENST00000531727 HSD3B7Q9H2F3 369 aa17.08■□□□□ 0.32
CPSF1-207ENST00000531727 NOL6Q9H6R4 1146 aaKnown RBP17.08■□□□□ 0.32
CPSF1-207ENST00000531727 CLCA2Q9UQC9 943 aa17.08■□□□□ 0.32
CPSF1-207ENST00000531727 ITM2BQ9Y287 266 aa17.08■□□□□ 0.32
CPSF1-207ENST00000531727 AK5Q9Y6K8 562 aa17.08■□□□□ 0.32
CPSF1-207ENST00000531727 CELSR3Q9NYQ7 3312 aa17.08■□□□□ 0.32
CPSF1-207ENST00000531727 NEMP2A6NFY4 417 aa17.07■□□□□ 0.32
CPSF1-207ENST00000531727 FPGTO14772 594 aa17.07■□□□□ 0.32
CPSF1-207ENST00000531727 SCAMP1O15126 338 aa17.07■□□□□ 0.32
CPSF1-207ENST00000531727 SPINT1O43278 529 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms